{ "directed": true, "multigraph": false, "graph": {}, "nodes": [ { "name": "drp.project", "uuid": null, "label": "Micro-CT dataset of Mount Gambier Limestone with Segmentation Classifier, Dual Pore Network Model and Finite Volume Meshes", "order": 0, "value": { "title": "Micro-CT dataset of Mount Gambier Limestone with Segmentation Classifier, Dual Pore Network Model and Finite Volume Meshes", "authors": [ { "email": "shaheryar.hussain@curtin.edu.au", "isOwner": true, "username": "shaheryar94", "last_name": "Hussain", "first_name": "Shaheryar" }, { "email": "klaus@curtin.edu.au", "last_name": "Regenauer-Lieb", "first_name": "Klaus" }, { "email": "sheik.rahman@unsw.edu.au", "last_name": "Rahman", "first_name": "Sheikh" } ], "fileObjs": [], "keywords": [ "Carbonates", "Multiscale", "Pore networks", "Sub-resolution", "REV" ], "projectId": "drp.project.published.DRP-1149", "coverImage": "media/DRP-1149/cover_image/Cover.png", "guestUsers": [ { "email": "klaus@curtin.edu.au", "lastName": "Regenauer-Lieb", "firstName": "Klaus" }, { "email": "sheik.rahman@unsw.edu.au", "lastName": "Rahman", "firstName": "Sheikh" } ], "description": "This dataset provides a curated, high-resolution micro-CT characterisation of Mount Gambier limestone, a high-porosity Oligocene bioclastic carbonate from South Australia widely used in digital rock physics and pore-scale modelling. The dataset includes raw micro-CT imagery together with segmentation classifier, pore-network models, and simulation-ready meshes, providing a complete workflow from image data to computational models.\n\nA cylindrical plug (6 mm × 12 mm) was scanned at 2.675 µm voxel resolution using a Thermo Scientific HeliScan micro-CT system at the Tyree X-ray Micro-CT Facility, UNSW Sydney. The sample had undergone crude-oil ageing and sequential brine–oil flooding prior to imaging. The complete reconstructed 8-bit greyscale image stack is provided without filtering. A three-phase segmentation generated using the Trainable Weka 3D Segmentation plugin in Fiji/ImageJ2 classifies voxels as macro-porosity, micro-porosity, or solid matrix. The trained classifier is included as a reusable model.\n\nA 1280³ voxel (~3.42 mm) benchmark subvolume was extracted based on representative elementary volume analysis. A dual-porosity pore-network model was generated using the PoreSpy/OpenPNM SNOW2 algorithm, with macro-pore and micro-porosity domains coupled through interface-detected throats. STL surface models and a simulation-ready OpenFOAM polyMesh containing approximately 5 million hexahedral-dominant cells are also provided.\n\nThe dataset was validated through porosity, representative elementary volume, permeability, and numerical flow analyses. The image-derived porosity (~57%) agrees with an independent laboratory measurement, while the DPNM predicts a single-phase permeability of 1.51 D, consistent with laboratory experiment on the same sample.\n\nThe dataset supports digital rock physics, segmentation benchmarking, REV analysis, dual-porosity pore-network modelling, direct numerical simulation of single- and multiphase flow, and machine-learning applications.\n\nThe source code used for data processing and model generation is available at https://github.com/shaheryar9094/MicroCT_Data_Descriptor. A detailed data manuscript will follow soon after publication of this dataset.", "relatedDatasets": [], "relatedSoftware": [ { "softwareLink": "https://doi.org/10.1186/s12859-017-1934-z", "softwareTitle": "ImageJ2", "softwareDescription": "ImageJ2 is a software for multidimensional image data, with a focus on scientific imaging. It has been used for image processing and segmentation in this dataset." }, { "softwareLink": "https://www.openfoam.com/documentation/user-guide/4-mesh-generation-and-conversion/4.4-mesh-generation-with-the-snappyhexmesh-utility", "softwareTitle": "OpenFOAM's snappyHexMesh", "softwareDescription": "SnappyHexMesh is the mesh generation utility, supplied with OpenFOAM that generates volume meshes containing hexahedra and split hexahedra automatically from triangulated surface geometries in STL format. " }, { "softwareLink": "https://doi.org/10.21105/joss.01296", "softwareTitle": "Porespy", "softwareDescription": "PoreSpy, an open-source Python library for porous media image analysis, was used to extract the dual pore network via its SNOW2 algorithm. (https://doi.org/10.1016/j.compchemeng.2018.12.025)" }, { "softwareLink": "https://doi.org/10.1109/MCSE.2016.49", "softwareTitle": "OpenPNM", "softwareDescription": "OpenPNM is written in Python using NumPy and SciPy for most mathematical operations which assists the user with managing and interacting with all the topological, geometrical, and thermophysical data. " } ], "relatedPublications": [ { "publicationLink": "https://doi.org/10.1007/s11242-026-02295-4", "publicationType": "context", "publicationTitle": "Multiscale Representative Elementary Volume Determination in Complex Porous Media: An Integrated Hydrodynamic and Thermodynamic Modelling Approach" }, { "publicationLink": "https://doi.org/10.1021/acs.energyfuels.1c01313", "publicationType": "context", "publicationTitle": "Multiphase Fluid Flow through Fractured Porous Media Supported by Innovative Laboratory and Numerical Methods for Estimating Relative Permeability" } ], "doi": "10.17612/39ec-md08", "publicationDate": "2026-09-14T16:44:54.626Z" }, "version": 1, "projectType": null, "id": "NODE_ROOT" }, { "name": "drp.project.sample", "uuid": null, "label": "Mount Gambier Limestone", "order": 0, "value": { "name": "Mount Gambier Limestone", "source": "natural", "dataType": "sample", "fileObjs": [], "porosity": 0.57, "onshoreOffshore": "onshore", "porousMediaType": "carbonate", 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The resulting porosity–volume relationship is used to evaluate convergence towards a stable porosity value, providing a quantitative assessment of the REV and the statistical consistency of the segmented pore structure.", "imageFormat": "*.tif", "isSegmented": "yes", "imagingCenter": "Tyree X-ray CT Facility UNSW", "dimensionality": "3D", "imageByteOrder": "8-bit", "imageDimensions": "1280 x1280 x 1280", "imagingEquipmentAndModel": "HeliScan micro-CT" }, "id": "NODE_drp.project.digital_dataset_81a324e2-1760-48ed-b9ce-8d4cfac39cf0" }, { "name": "drp.project.analysis_dataset", "uuid": null, "label": "Dual Pore Network Model", "order": 2, "value": { "name": "Dual Pore Network Model", "sample": "ef991c67-b8a8-418d-aa48-0c2a749c135b", "dataType": "analysis_data", "fileObjs": [ { "name": "dpnm_link1.dat", "path": "Mount Gambier Limestone/Dual Pore Network Model/dpnm_link1.dat", "type": "file", "uuid": "094ec9a8-64e9-4e0a-81f6-dc81c3a7a90d", "value": { "dataType": "file", "isAdvancedImageFile": false }, "length": 133807808, "system": "drp.project.DRP-1149" }, { "name": "dpnm_link2.dat", "path": "Mount Gambier Limestone/Dual Pore Network Model/dpnm_link2.dat", "type": "file", "uuid": "98df3347-435b-4216-9243-9bb5103ee83b", "value": { "dataType": "file", "isAdvancedImageFile": false }, "length": 114779378, "system": "drp.project.DRP-1149" }, { "name": "dpnm_network.vtk", "path": "Mount Gambier Limestone/Dual Pore Network Model/dpnm_network.vtk", "type": "file", "uuid": "b30b0cc7-19b2-4c11-92fa-e202404f256c", "value": { "dataType": "file", "isAdvancedImageFile": false }, "length": 171103910, "system": "drp.project.DRP-1149" }, { "name": "dpnm_node1.dat", "path": "Mount Gambier Limestone/Dual Pore Network Model/dpnm_node1.dat", "type": "file", "uuid": "a5036508-91eb-4e58-92d5-edfdba082dd4", "value": { "dataType": "file", "isAdvancedImageFile": false }, "length": 71928874, "system": "drp.project.DRP-1149" }, { "name": "dpnm_node2.dat", "path": "Mount Gambier Limestone/Dual Pore Network Model/dpnm_node2.dat", "type": "file", "uuid": "903ab3a4-cba2-4edf-8708-4e5a65d60adb", "value": { "dataType": "file", "isAdvancedImageFile": false }, "length": 37262004, "system": "drp.project.DRP-1149" }, { "name": "dpnm_pores.csv", "path": "Mount Gambier Limestone/Dual Pore Network Model/dpnm_pores.csv", "type": "file", "uuid": "c4f75fb2-7be9-4da7-863b-b5e9fc9b3f51", "value": { "dataType": "file", "isAdvancedImageFile": false }, "length": 70051141, "system": "drp.project.DRP-1149" }, { "name": "dpnm_throats.csv", "path": "Mount Gambier Limestone/Dual Pore Network Model/dpnm_throats.csv", "type": "file", "uuid": "004c0a5b-ec56-44f3-8cd1-44e83c4b34c6", "value": { "dataType": "file", "isAdvancedImageFile": false }, "length": 114779416, "system": "drp.project.DRP-1149" } ], "datasetType": "geometric_analysis", "description": "This dataset includes a dual-pore-network model of the segmented REV sub-volume in various formats. 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