WORKDIR=/workarea/igilab/data/qayyum/tcga_ov all: job02-09-0367 job05-09-1667 job06-09-1669 job07-09-1672 job08-09-1673 job09-09-1674 job10-09-1675 job11-09-2043 job12-09-2044 job13-09-2045 job14-09-2050 job15-09-2051 job16-09-2053 job17-09-2054 job18-09-2055 job19-13-0720 job20-13-0724 job21-13-0761 job22-13-0762 job23-13-0768 job24-13-0793 job25-13-0794 job26-13-0795 job27-13-0797 job28-13-0799 job29-13-0800 job30-13-0802 job31-13-0807 job32-13-0883 job33-13-0904 job34-13-0910 job35-13-0911 job36-13-0916 job37-13-0920 job38-13-0921 job39-13-0924 job40-13-1405 job41-13-1408 job42-13-1411 job43-13-1412 job44-13-1488 job45-13-1495 job46-13-1499 job47-13-1504 job48-13-1505 job49-13-1506 job50-13-1507 job51-13-1509 job52-13-1511 job53-13-2057 job54-13-2059 job55-13-2060 job56-13-2066 job57-13-2071 #job01-09-0364 job03-09-0369 job04-09-1659 #job01-09-0364: #cd $(WORKDIR)/01-09-0364;c3d 01-09-0364_grey.nii.gz 01-09-0364_labels.nii.gz -copy-transform -o 01-09-0364_labels.nii.gz #cd $(WORKDIR)/01-09-0364;c3d 01-09-0364_grey.nii.gz -orient RAI -o 01-09-0364_grey.nii.gz #cd $(WORKDIR)/01-09-0364;c3d 01-09-0364_labels.nii.gz -orient RAI -o 01-09-0364_labels.nii.gz #cd $(WORKDIR)/01-09-0364;c3d 01-09-0364_labels.nii.gz -binarize -o 01-09-0364_mask.nii.gz #cd $(WORKDIR)/01-09-0364;../createFeatureImagesOvary.sh -d 3 -x 01-09-0364_mask.nii.gz -l3 -n pre -a 01-09-0364_grey.nii.gz -f 0x2 -o ./01-09-0364_ -r 1 -r 3 -s 2 -b 4 job02-09-0367: cd $(WORKDIR)/02-09-0367;c3d 02-09-0367_grey.nii.gz 02-09-0367_labels.nii.gz -copy-transform -o 02-09-0367_labels.nii.gz cd $(WORKDIR)/02-09-0367;c3d 02-09-0367_grey.nii.gz -orient RAI -o 02-09-0367_grey.nii.gz cd $(WORKDIR)/02-09-0367;c3d 02-09-0367_labels.nii.gz -orient RAI -o 02-09-0367_labels.nii.gz cd $(WORKDIR)/02-09-0367;c3d 02-09-0367_labels.nii.gz -binarize -o 02-09-0367_mask.nii.gz cd $(WORKDIR)/02-09-0367;../createFeatureImagesOvary.sh -d 3 -x 02-09-0367_mask.nii.gz -l3 -n pre -a 02-09-0367_grey.nii.gz -f 0x2 -o ./02-09-0367_ -r 1 -r 3 -s 2 -b 4 #job03-09-0369: #cd $(WORKDIR)/03-09-0369;c3d 03-09-0369_grey.nii.gz 03-09-0369_labels.nii.gz -copy-transform -o 03-09-0369_labels.nii.gz #cd $(WORKDIR)/03-09-0369;c3d 03-09-0369_grey.nii.gz -orient RAI -o 03-09-0369_grey.nii.gz #cd $(WORKDIR)/03-09-0369;c3d 03-09-0369_labels.nii.gz -orient RAI -o 03-09-0369_labels.nii.gz #cd $(WORKDIR)/03-09-0369;c3d 03-09-0369_labels.nii.gz -binarize -o 03-09-0369_mask.nii.gz #cd $(WORKDIR)/03-09-0369;../createFeatureImagesOvary.sh -d 3 -x 03-09-0369_mask.nii.gz -l3 -n pre -a 03-09-0369_grey.nii.gz -f 0x2 -o ./03-09-0369_ -r 1 -r 3 -s 2 -b 4 job04-09-1659: cd $(WORKDIR)/04-09-1659;c3d 04-09-1659_grey.nii.gz 04-09-1659_labels.nii.gz -copy-transform -o 04-09-1659_labels.nii.gz cd $(WORKDIR)/04-09-1659;c3d 04-09-1659_grey.nii.gz -orient RAI -o 04-09-1659_grey.nii.gz cd $(WORKDIR)/04-09-1659;c3d 04-09-1659_labels.nii.gz -orient RAI -o 04-09-1659_labels.nii.gz cd $(WORKDIR)/04-09-1659;c3d 04-09-1659_labels.nii.gz -binarize -o 04-09-1659_mask.nii.gz cd $(WORKDIR)/04-09-1659;../createFeatureImagesOvary.sh -d 3 -x 04-09-1659_mask.nii.gz -l3 -n pre -a 04-09-1659_grey.nii.gz -f 0x2 -o ./04-09-1659_ -r 1 -r 3 -s 2 -b 4 job05-09-1667: cd $(WORKDIR)/05-09-1667;c3d 05-09-1667_grey.nii.gz 05-09-1667_labels.nii.gz -copy-transform -o 05-09-1667_labels.nii.gz cd $(WORKDIR)/05-09-1667;c3d 05-09-1667_grey.nii.gz -orient RAI -o 05-09-1667_grey.nii.gz cd $(WORKDIR)/05-09-1667;c3d 05-09-1667_labels.nii.gz -orient RAI -o 05-09-1667_labels.nii.gz cd $(WORKDIR)/05-09-1667;c3d 05-09-1667_labels.nii.gz -binarize -o 05-09-1667_mask.nii.gz cd $(WORKDIR)/05-09-1667;../createFeatureImagesOvary.sh -d 3 -x 05-09-1667_mask.nii.gz -l3 -n pre -a 05-09-1667_grey.nii.gz -f 0x2 -o ./05-09-1667_ -r 1 -r 3 -s 2 -b 4 job06-09-1669: cd $(WORKDIR)/06-09-1669;c3d 06-09-1669_grey.nii.gz 06-09-1669_labels.nii.gz -copy-transform -o 06-09-1669_labels.nii.gz cd $(WORKDIR)/06-09-1669;c3d 06-09-1669_grey.nii.gz -orient RAI -o 06-09-1669_grey.nii.gz cd $(WORKDIR)/06-09-1669;c3d 06-09-1669_labels.nii.gz -orient RAI -o 06-09-1669_labels.nii.gz cd $(WORKDIR)/06-09-1669;c3d 06-09-1669_labels.nii.gz -binarize -o 06-09-1669_mask.nii.gz cd $(WORKDIR)/06-09-1669;../createFeatureImagesOvary.sh -d 3 -x 06-09-1669_mask.nii.gz -l3 -n pre -a 06-09-1669_grey.nii.gz -f 0x2 -o ./06-09-1669_ -r 1 -r 3 -s 2 -b 4 job07-09-1672: cd $(WORKDIR)/07-09-1672;c3d 07-09-1672_grey.nii.gz 07-09-1672_labels.nii.gz -copy-transform -o 07-09-1672_labels.nii.gz cd $(WORKDIR)/07-09-1672;c3d 07-09-1672_grey.nii.gz -orient RAI -o 07-09-1672_grey.nii.gz cd $(WORKDIR)/07-09-1672;c3d 07-09-1672_labels.nii.gz -orient RAI -o 07-09-1672_labels.nii.gz cd $(WORKDIR)/07-09-1672;c3d 07-09-1672_labels.nii.gz -binarize -o 07-09-1672_mask.nii.gz cd $(WORKDIR)/07-09-1672;../createFeatureImagesOvary.sh -d 3 -x 07-09-1672_mask.nii.gz -l3 -n pre -a 07-09-1672_grey.nii.gz -f 0x2 -o ./07-09-1672_ -r 1 -r 3 -s 2 -b 4 job08-09-1673: cd $(WORKDIR)/08-09-1673;c3d 08-09-1673_grey.nii.gz 08-09-1673_labels.nii.gz -copy-transform -o 08-09-1673_labels.nii.gz cd $(WORKDIR)/08-09-1673;c3d 08-09-1673_grey.nii.gz -orient RAI -o 08-09-1673_grey.nii.gz cd $(WORKDIR)/08-09-1673;c3d 08-09-1673_labels.nii.gz -orient RAI -o 08-09-1673_labels.nii.gz cd $(WORKDIR)/08-09-1673;c3d 08-09-1673_labels.nii.gz -binarize -o 08-09-1673_mask.nii.gz cd $(WORKDIR)/08-09-1673;../createFeatureImagesOvary.sh -d 3 -x 08-09-1673_mask.nii.gz -l3 -n pre -a 08-09-1673_grey.nii.gz -f 0x2 -o ./08-09-1673_ -r 1 -r 3 -s 2 -b 4 job09-09-1674: cd $(WORKDIR)/09-09-1674;c3d 09-09-1674_grey.nii.gz 09-09-1674_labels.nii.gz -copy-transform -o 09-09-1674_labels.nii.gz cd $(WORKDIR)/09-09-1674;c3d 09-09-1674_grey.nii.gz -orient RAI -o 09-09-1674_grey.nii.gz cd $(WORKDIR)/09-09-1674;c3d 09-09-1674_labels.nii.gz -orient RAI -o 09-09-1674_labels.nii.gz cd $(WORKDIR)/09-09-1674;c3d 09-09-1674_labels.nii.gz -binarize -o 09-09-1674_mask.nii.gz cd $(WORKDIR)/09-09-1674;../createFeatureImagesOvary.sh -d 3 -x 09-09-1674_mask.nii.gz -l3 -n pre -a 09-09-1674_grey.nii.gz -f 0x2 -o ./09-09-1674_ -r 1 -r 3 -s 2 -b 4 job10-09-1675: cd $(WORKDIR)/10-09-1675;c3d 10-09-1675_grey.nii.gz 10-09-1675_labels.nii.gz -copy-transform -o 10-09-1675_labels.nii.gz cd $(WORKDIR)/10-09-1675;c3d 10-09-1675_grey.nii.gz -orient RAI -o 10-09-1675_grey.nii.gz cd $(WORKDIR)/10-09-1675;c3d 10-09-1675_labels.nii.gz -orient RAI -o 10-09-1675_labels.nii.gz cd $(WORKDIR)/10-09-1675;c3d 10-09-1675_labels.nii.gz -binarize -o 10-09-1675_mask.nii.gz cd $(WORKDIR)/10-09-1675;../createFeatureImagesOvary.sh -d 3 -x 10-09-1675_mask.nii.gz -l3 -n pre -a 10-09-1675_grey.nii.gz -f 0x2 -o ./10-09-1675_ -r 1 -r 3 -s 2 -b 4 job11-09-2043: cd $(WORKDIR)/11-09-2043;c3d 11-09-2043_grey.nii.gz 11-09-2043_labels.nii.gz -copy-transform -o 11-09-2043_labels.nii.gz cd $(WORKDIR)/11-09-2043;c3d 11-09-2043_grey.nii.gz -orient RAI -o 11-09-2043_grey.nii.gz cd $(WORKDIR)/11-09-2043;c3d 11-09-2043_labels.nii.gz -orient RAI -o 11-09-2043_labels.nii.gz cd $(WORKDIR)/11-09-2043;c3d 11-09-2043_labels.nii.gz -binarize -o 11-09-2043_mask.nii.gz cd $(WORKDIR)/11-09-2043;../createFeatureImagesOvary.sh -d 3 -x 11-09-2043_mask.nii.gz -l3 -n pre -a 11-09-2043_grey.nii.gz -f 0x2 -o ./11-09-2043_ -r 1 -r 3 -s 2 -b 4 job12-09-2044: cd $(WORKDIR)/12-09-2044;c3d 12-09-2044_grey.nii.gz 12-09-2044_labels.nii.gz -copy-transform -o 12-09-2044_labels.nii.gz cd $(WORKDIR)/12-09-2044;c3d 12-09-2044_grey.nii.gz -orient RAI -o 12-09-2044_grey.nii.gz cd $(WORKDIR)/12-09-2044;c3d 12-09-2044_labels.nii.gz -orient RAI -o 12-09-2044_labels.nii.gz cd $(WORKDIR)/12-09-2044;c3d 12-09-2044_labels.nii.gz -binarize -o 12-09-2044_mask.nii.gz cd $(WORKDIR)/12-09-2044;../createFeatureImagesOvary.sh -d 3 -x 12-09-2044_mask.nii.gz -l3 -n pre -a 12-09-2044_grey.nii.gz -f 0x2 -o ./12-09-2044_ -r 1 -r 3 -s 2 -b 4 job13-09-2045: cd $(WORKDIR)/13-09-2045;c3d 13-09-2045_grey.nii.gz 13-09-2045_labels.nii.gz -copy-transform -o 13-09-2045_labels.nii.gz cd $(WORKDIR)/13-09-2045;c3d 13-09-2045_grey.nii.gz -orient RAI -o 13-09-2045_grey.nii.gz cd $(WORKDIR)/13-09-2045;c3d 13-09-2045_labels.nii.gz -orient RAI -o 13-09-2045_labels.nii.gz cd $(WORKDIR)/13-09-2045;c3d 13-09-2045_labels.nii.gz -binarize -o 13-09-2045_mask.nii.gz cd $(WORKDIR)/13-09-2045;../createFeatureImagesOvary.sh -d 3 -x 13-09-2045_mask.nii.gz -l3 -n pre -a 13-09-2045_grey.nii.gz -f 0x2 -o ./13-09-2045_ -r 1 -r 3 -s 2 -b 4 job14-09-2050: cd $(WORKDIR)/14-09-2050;c3d 14-09-2050_grey.nii.gz 14-09-2050_labels.nii.gz -copy-transform -o 14-09-2050_labels.nii.gz cd $(WORKDIR)/14-09-2050;c3d 14-09-2050_grey.nii.gz -orient RAI -o 14-09-2050_grey.nii.gz cd $(WORKDIR)/14-09-2050;c3d 14-09-2050_labels.nii.gz -orient RAI -o 14-09-2050_labels.nii.gz cd $(WORKDIR)/14-09-2050;c3d 14-09-2050_labels.nii.gz -binarize -o 14-09-2050_mask.nii.gz cd $(WORKDIR)/14-09-2050;../createFeatureImagesOvary.sh -d 3 -x 14-09-2050_mask.nii.gz -l3 -n pre -a 14-09-2050_grey.nii.gz -f 0x2 -o ./14-09-2050_ -r 1 -r 3 -s 2 -b 4 job15-09-2051: cd $(WORKDIR)/15-09-2051;c3d 15-09-2051_grey.nii.gz 15-09-2051_labels.nii.gz -copy-transform -o 15-09-2051_labels.nii.gz cd $(WORKDIR)/15-09-2051;c3d 15-09-2051_grey.nii.gz -orient RAI -o 15-09-2051_grey.nii.gz cd $(WORKDIR)/15-09-2051;c3d 15-09-2051_labels.nii.gz -orient RAI -o 15-09-2051_labels.nii.gz cd $(WORKDIR)/15-09-2051;c3d 15-09-2051_labels.nii.gz -binarize -o 15-09-2051_mask.nii.gz cd $(WORKDIR)/15-09-2051;../createFeatureImagesOvary.sh -d 3 -x 15-09-2051_mask.nii.gz -l3 -n pre -a 15-09-2051_grey.nii.gz -f 0x2 -o ./15-09-2051_ -r 1 -r 3 -s 2 -b 4 job16-09-2053: cd $(WORKDIR)/16-09-2053;c3d 16-09-2053_grey.nii.gz 16-09-2053_labels.nii.gz -copy-transform -o 16-09-2053_labels.nii.gz cd $(WORKDIR)/16-09-2053;c3d 16-09-2053_grey.nii.gz -orient RAI -o 16-09-2053_grey.nii.gz cd $(WORKDIR)/16-09-2053;c3d 16-09-2053_labels.nii.gz -orient RAI -o 16-09-2053_labels.nii.gz cd $(WORKDIR)/16-09-2053;c3d 16-09-2053_labels.nii.gz -binarize -o 16-09-2053_mask.nii.gz cd $(WORKDIR)/16-09-2053;../createFeatureImagesOvary.sh -d 3 -x 16-09-2053_mask.nii.gz -l3 -n pre -a 16-09-2053_grey.nii.gz -f 0x2 -o ./16-09-2053_ -r 1 -r 3 -s 2 -b 4 job17-09-2054: cd $(WORKDIR)/17-09-2054;c3d 17-09-2054_grey.nii.gz 17-09-2054_labels.nii.gz -copy-transform -o 17-09-2054_labels.nii.gz cd $(WORKDIR)/17-09-2054;c3d 17-09-2054_grey.nii.gz -orient RAI -o 17-09-2054_grey.nii.gz cd $(WORKDIR)/17-09-2054;c3d 17-09-2054_labels.nii.gz -orient RAI -o 17-09-2054_labels.nii.gz cd $(WORKDIR)/17-09-2054;c3d 17-09-2054_labels.nii.gz -binarize -o 17-09-2054_mask.nii.gz cd $(WORKDIR)/17-09-2054;../createFeatureImagesOvary.sh -d 3 -x 17-09-2054_mask.nii.gz -l3 -n pre -a 17-09-2054_grey.nii.gz -f 0x2 -o ./17-09-2054_ -r 1 -r 3 -s 2 -b 4 job18-09-2055: cd $(WORKDIR)/18-09-2055;c3d 18-09-2055_grey.nii.gz 18-09-2055_labels.nii.gz -copy-transform -o 18-09-2055_labels.nii.gz cd $(WORKDIR)/18-09-2055;c3d 18-09-2055_grey.nii.gz -orient RAI -o 18-09-2055_grey.nii.gz cd $(WORKDIR)/18-09-2055;c3d 18-09-2055_labels.nii.gz -orient RAI -o 18-09-2055_labels.nii.gz cd $(WORKDIR)/18-09-2055;c3d 18-09-2055_labels.nii.gz -binarize -o 18-09-2055_mask.nii.gz cd $(WORKDIR)/18-09-2055;../createFeatureImagesOvary.sh -d 3 -x 18-09-2055_mask.nii.gz -l3 -n pre -a 18-09-2055_grey.nii.gz -f 0x2 -o ./18-09-2055_ -r 1 -r 3 -s 2 -b 4 job19-13-0720: cd $(WORKDIR)/19-13-0720;c3d 19-13-0720_grey.nii.gz 19-13-0720_labels.nii.gz -copy-transform -o 19-13-0720_labels.nii.gz cd $(WORKDIR)/19-13-0720;c3d 19-13-0720_grey.nii.gz -orient RAI -o 19-13-0720_grey.nii.gz cd $(WORKDIR)/19-13-0720;c3d 19-13-0720_labels.nii.gz -orient RAI -o 19-13-0720_labels.nii.gz cd $(WORKDIR)/19-13-0720;c3d 19-13-0720_labels.nii.gz -binarize -o 19-13-0720_mask.nii.gz cd $(WORKDIR)/19-13-0720;../createFeatureImagesOvary.sh -d 3 -x 19-13-0720_mask.nii.gz -l3 -n pre -a 19-13-0720_grey.nii.gz -f 0x2 -o ./19-13-0720_ -r 1 -r 3 -s 2 -b 4 job20-13-0724: cd $(WORKDIR)/20-13-0724;c3d 20-13-0724_grey.nii.gz 20-13-0724_labels.nii.gz -copy-transform -o 20-13-0724_labels.nii.gz cd $(WORKDIR)/20-13-0724;c3d 20-13-0724_grey.nii.gz -orient RAI -o 20-13-0724_grey.nii.gz cd $(WORKDIR)/20-13-0724;c3d 20-13-0724_labels.nii.gz -orient RAI -o 20-13-0724_labels.nii.gz cd $(WORKDIR)/20-13-0724;c3d 20-13-0724_labels.nii.gz -binarize -o 20-13-0724_mask.nii.gz cd $(WORKDIR)/20-13-0724;../createFeatureImagesOvary.sh -d 3 -x 20-13-0724_mask.nii.gz -l3 -n pre -a 20-13-0724_grey.nii.gz -f 0x2 -o ./20-13-0724_ -r 1 -r 3 -s 2 -b 4 job21-13-0761: cd $(WORKDIR)/21-13-0761;c3d 21-13-0761_grey.nii.gz 21-13-0761_labels.nii.gz -copy-transform -o 21-13-0761_labels.nii.gz cd $(WORKDIR)/21-13-0761;c3d 21-13-0761_grey.nii.gz -orient RAI -o 21-13-0761_grey.nii.gz cd $(WORKDIR)/21-13-0761;c3d 21-13-0761_labels.nii.gz -orient RAI -o 21-13-0761_labels.nii.gz cd $(WORKDIR)/21-13-0761;c3d 21-13-0761_labels.nii.gz -binarize -o 21-13-0761_mask.nii.gz cd $(WORKDIR)/21-13-0761;../createFeatureImagesOvary.sh -d 3 -x 21-13-0761_mask.nii.gz -l3 -n pre -a 21-13-0761_grey.nii.gz -f 0x2 -o ./21-13-0761_ -r 1 -r 3 -s 2 -b 4 job22-13-0762: cd $(WORKDIR)/22-13-0762;c3d 22-13-0762_grey.nii.gz 22-13-0762_labels.nii.gz -copy-transform -o 22-13-0762_labels.nii.gz cd $(WORKDIR)/22-13-0762;c3d 22-13-0762_grey.nii.gz -orient RAI -o 22-13-0762_grey.nii.gz cd $(WORKDIR)/22-13-0762;c3d 22-13-0762_labels.nii.gz -orient RAI -o 22-13-0762_labels.nii.gz cd $(WORKDIR)/22-13-0762;c3d 22-13-0762_labels.nii.gz -binarize -o 22-13-0762_mask.nii.gz cd $(WORKDIR)/22-13-0762;../createFeatureImagesOvary.sh -d 3 -x 22-13-0762_mask.nii.gz -l3 -n pre -a 22-13-0762_grey.nii.gz -f 0x2 -o ./22-13-0762_ -r 1 -r 3 -s 2 -b 4 job23-13-0768: cd $(WORKDIR)/23-13-0768;c3d 23-13-0768_grey.nii.gz 23-13-0768_labels.nii.gz -copy-transform -o 23-13-0768_labels.nii.gz cd $(WORKDIR)/23-13-0768;c3d 23-13-0768_grey.nii.gz -orient RAI -o 23-13-0768_grey.nii.gz cd $(WORKDIR)/23-13-0768;c3d 23-13-0768_labels.nii.gz -orient RAI -o 23-13-0768_labels.nii.gz cd $(WORKDIR)/23-13-0768;c3d 23-13-0768_labels.nii.gz -binarize -o 23-13-0768_mask.nii.gz cd $(WORKDIR)/23-13-0768;../createFeatureImagesOvary.sh -d 3 -x 23-13-0768_mask.nii.gz -l3 -n pre -a 23-13-0768_grey.nii.gz -f 0x2 -o ./23-13-0768_ -r 1 -r 3 -s 2 -b 4 job24-13-0793: cd $(WORKDIR)/24-13-0793;c3d 24-13-0793_grey.nii.gz 24-13-0793_labels.nii.gz -copy-transform -o 24-13-0793_labels.nii.gz cd $(WORKDIR)/24-13-0793;c3d 24-13-0793_grey.nii.gz -orient RAI -o 24-13-0793_grey.nii.gz cd $(WORKDIR)/24-13-0793;c3d 24-13-0793_labels.nii.gz -orient RAI -o 24-13-0793_labels.nii.gz cd $(WORKDIR)/24-13-0793;c3d 24-13-0793_labels.nii.gz -binarize -o 24-13-0793_mask.nii.gz cd $(WORKDIR)/24-13-0793;../createFeatureImagesOvary.sh -d 3 -x 24-13-0793_mask.nii.gz -l3 -n pre -a 24-13-0793_grey.nii.gz -f 0x2 -o ./24-13-0793_ -r 1 -r 3 -s 2 -b 4 job25-13-0794: cd $(WORKDIR)/25-13-0794;c3d 25-13-0794_grey.nii.gz 25-13-0794_labels.nii.gz -copy-transform -o 25-13-0794_labels.nii.gz cd $(WORKDIR)/25-13-0794;c3d 25-13-0794_grey.nii.gz -orient RAI -o 25-13-0794_grey.nii.gz cd $(WORKDIR)/25-13-0794;c3d 25-13-0794_labels.nii.gz -orient RAI -o 25-13-0794_labels.nii.gz cd $(WORKDIR)/25-13-0794;c3d 25-13-0794_labels.nii.gz -binarize -o 25-13-0794_mask.nii.gz cd $(WORKDIR)/25-13-0794;../createFeatureImagesOvary.sh -d 3 -x 25-13-0794_mask.nii.gz -l3 -n pre -a 25-13-0794_grey.nii.gz -f 0x2 -o ./25-13-0794_ -r 1 -r 3 -s 2 -b 4 job26-13-0795: cd $(WORKDIR)/26-13-0795;c3d 26-13-0795_grey.nii.gz 26-13-0795_labels.nii.gz -copy-transform -o 26-13-0795_labels.nii.gz cd $(WORKDIR)/26-13-0795;c3d 26-13-0795_grey.nii.gz -orient RAI -o 26-13-0795_grey.nii.gz cd $(WORKDIR)/26-13-0795;c3d 26-13-0795_labels.nii.gz -orient RAI -o 26-13-0795_labels.nii.gz cd $(WORKDIR)/26-13-0795;c3d 26-13-0795_labels.nii.gz -binarize -o 26-13-0795_mask.nii.gz cd $(WORKDIR)/26-13-0795;../createFeatureImagesOvary.sh -d 3 -x 26-13-0795_mask.nii.gz -l3 -n pre -a 26-13-0795_grey.nii.gz -f 0x2 -o ./26-13-0795_ -r 1 -r 3 -s 2 -b 4 job27-13-0797: cd $(WORKDIR)/27-13-0797;c3d 27-13-0797_grey.nii.gz 27-13-0797_labels.nii.gz -copy-transform -o 27-13-0797_labels.nii.gz cd $(WORKDIR)/27-13-0797;c3d 27-13-0797_grey.nii.gz -orient RAI -o 27-13-0797_grey.nii.gz cd $(WORKDIR)/27-13-0797;c3d 27-13-0797_labels.nii.gz -orient RAI -o 27-13-0797_labels.nii.gz cd $(WORKDIR)/27-13-0797;c3d 27-13-0797_labels.nii.gz -binarize -o 27-13-0797_mask.nii.gz cd $(WORKDIR)/27-13-0797;../createFeatureImagesOvary.sh -d 3 -x 27-13-0797_mask.nii.gz -l3 -n pre -a 27-13-0797_grey.nii.gz -f 0x2 -o ./27-13-0797_ -r 1 -r 3 -s 2 -b 4 job28-13-0799: cd $(WORKDIR)/28-13-0799;c3d 28-13-0799_grey.nii.gz 28-13-0799_labels.nii.gz -copy-transform -o 28-13-0799_labels.nii.gz cd $(WORKDIR)/28-13-0799;c3d 28-13-0799_grey.nii.gz -orient RAI -o 28-13-0799_grey.nii.gz cd $(WORKDIR)/28-13-0799;c3d 28-13-0799_labels.nii.gz -orient RAI -o 28-13-0799_labels.nii.gz cd $(WORKDIR)/28-13-0799;c3d 28-13-0799_labels.nii.gz -binarize -o 28-13-0799_mask.nii.gz cd $(WORKDIR)/28-13-0799;../createFeatureImagesOvary.sh -d 3 -x 28-13-0799_mask.nii.gz -l3 -n pre -a 28-13-0799_grey.nii.gz -f 0x2 -o ./28-13-0799_ -r 1 -r 3 -s 2 -b 4 job29-13-0800: cd $(WORKDIR)/29-13-0800;c3d 29-13-0800_grey.nii.gz 29-13-0800_labels.nii.gz -copy-transform -o 29-13-0800_labels.nii.gz cd $(WORKDIR)/29-13-0800;c3d 29-13-0800_grey.nii.gz -orient RAI -o 29-13-0800_grey.nii.gz cd $(WORKDIR)/29-13-0800;c3d 29-13-0800_labels.nii.gz -orient RAI -o 29-13-0800_labels.nii.gz cd $(WORKDIR)/29-13-0800;c3d 29-13-0800_labels.nii.gz -binarize -o 29-13-0800_mask.nii.gz cd $(WORKDIR)/29-13-0800;../createFeatureImagesOvary.sh -d 3 -x 29-13-0800_mask.nii.gz -l3 -n pre -a 29-13-0800_grey.nii.gz -f 0x2 -o ./29-13-0800_ -r 1 -r 3 -s 2 -b 4 job30-13-0802: cd $(WORKDIR)/30-13-0802;c3d 30-13-0802_grey.nii.gz 30-13-0802_labels.nii.gz -copy-transform -o 30-13-0802_labels.nii.gz cd $(WORKDIR)/30-13-0802;c3d 30-13-0802_grey.nii.gz -orient RAI -o 30-13-0802_grey.nii.gz cd $(WORKDIR)/30-13-0802;c3d 30-13-0802_labels.nii.gz -orient RAI -o 30-13-0802_labels.nii.gz cd $(WORKDIR)/30-13-0802;c3d 30-13-0802_labels.nii.gz -binarize -o 30-13-0802_mask.nii.gz cd $(WORKDIR)/30-13-0802;../createFeatureImagesOvary.sh -d 3 -x 30-13-0802_mask.nii.gz -l3 -n pre -a 30-13-0802_grey.nii.gz -f 0x2 -o ./30-13-0802_ -r 1 -r 3 -s 2 -b 4 job31-13-0807: cd $(WORKDIR)/31-13-0807;c3d 31-13-0807_grey.nii.gz 31-13-0807_labels.nii.gz -copy-transform -o 31-13-0807_labels.nii.gz cd $(WORKDIR)/31-13-0807;c3d 31-13-0807_grey.nii.gz -orient RAI -o 31-13-0807_grey.nii.gz cd $(WORKDIR)/31-13-0807;c3d 31-13-0807_labels.nii.gz -orient RAI -o 31-13-0807_labels.nii.gz cd $(WORKDIR)/31-13-0807;c3d 31-13-0807_labels.nii.gz -binarize -o 31-13-0807_mask.nii.gz cd $(WORKDIR)/31-13-0807;../createFeatureImagesOvary.sh -d 3 -x 31-13-0807_mask.nii.gz -l3 -n pre -a 31-13-0807_grey.nii.gz -f 0x2 -o ./31-13-0807_ -r 1 -r 3 -s 2 -b 4 job32-13-0883: cd $(WORKDIR)/32-13-0883;c3d 32-13-0883_grey.nii.gz 32-13-0883_labels.nii.gz -copy-transform -o 32-13-0883_labels.nii.gz cd $(WORKDIR)/32-13-0883;c3d 32-13-0883_grey.nii.gz -orient RAI -o 32-13-0883_grey.nii.gz cd $(WORKDIR)/32-13-0883;c3d 32-13-0883_labels.nii.gz -orient RAI -o 32-13-0883_labels.nii.gz cd $(WORKDIR)/32-13-0883;c3d 32-13-0883_labels.nii.gz -binarize -o 32-13-0883_mask.nii.gz cd $(WORKDIR)/32-13-0883;../createFeatureImagesOvary.sh -d 3 -x 32-13-0883_mask.nii.gz -l3 -n pre -a 32-13-0883_grey.nii.gz -f 0x2 -o ./32-13-0883_ -r 1 -r 3 -s 2 -b 4 job33-13-0904: cd $(WORKDIR)/33-13-0904;c3d 33-13-0904_grey.nii.gz 33-13-0904_labels.nii.gz -copy-transform -o 33-13-0904_labels.nii.gz cd $(WORKDIR)/33-13-0904;c3d 33-13-0904_grey.nii.gz -orient RAI -o 33-13-0904_grey.nii.gz cd $(WORKDIR)/33-13-0904;c3d 33-13-0904_labels.nii.gz -orient RAI -o 33-13-0904_labels.nii.gz cd $(WORKDIR)/33-13-0904;c3d 33-13-0904_labels.nii.gz -binarize -o 33-13-0904_mask.nii.gz cd $(WORKDIR)/33-13-0904;../createFeatureImagesOvary.sh -d 3 -x 33-13-0904_mask.nii.gz -l3 -n pre -a 33-13-0904_grey.nii.gz -f 0x2 -o ./33-13-0904_ -r 1 -r 3 -s 2 -b 4 job34-13-0910: cd $(WORKDIR)/34-13-0910;c3d 34-13-0910_grey.nii.gz 34-13-0910_labels.nii.gz -copy-transform -o 34-13-0910_labels.nii.gz cd $(WORKDIR)/34-13-0910;c3d 34-13-0910_grey.nii.gz -orient RAI -o 34-13-0910_grey.nii.gz cd $(WORKDIR)/34-13-0910;c3d 34-13-0910_labels.nii.gz -orient RAI -o 34-13-0910_labels.nii.gz cd $(WORKDIR)/34-13-0910;c3d 34-13-0910_labels.nii.gz -binarize -o 34-13-0910_mask.nii.gz cd $(WORKDIR)/34-13-0910;../createFeatureImagesOvary.sh -d 3 -x 34-13-0910_mask.nii.gz -l3 -n pre -a 34-13-0910_grey.nii.gz -f 0x2 -o ./34-13-0910_ -r 1 -r 3 -s 2 -b 4 job35-13-0911: cd $(WORKDIR)/35-13-0911;c3d 35-13-0911_grey.nii.gz 35-13-0911_labels.nii.gz -copy-transform -o 35-13-0911_labels.nii.gz cd $(WORKDIR)/35-13-0911;c3d 35-13-0911_grey.nii.gz -orient RAI -o 35-13-0911_grey.nii.gz cd $(WORKDIR)/35-13-0911;c3d 35-13-0911_labels.nii.gz -orient RAI -o 35-13-0911_labels.nii.gz cd $(WORKDIR)/35-13-0911;c3d 35-13-0911_labels.nii.gz -binarize -o 35-13-0911_mask.nii.gz cd $(WORKDIR)/35-13-0911;../createFeatureImagesOvary.sh -d 3 -x 35-13-0911_mask.nii.gz -l3 -n pre -a 35-13-0911_grey.nii.gz -f 0x2 -o ./35-13-0911_ -r 1 -r 3 -s 2 -b 4 job36-13-0916: cd $(WORKDIR)/36-13-0916;c3d 36-13-0916_grey.nii.gz 36-13-0916_labels.nii.gz -copy-transform -o 36-13-0916_labels.nii.gz cd $(WORKDIR)/36-13-0916;c3d 36-13-0916_grey.nii.gz -orient RAI -o 36-13-0916_grey.nii.gz cd $(WORKDIR)/36-13-0916;c3d 36-13-0916_labels.nii.gz -orient RAI -o 36-13-0916_labels.nii.gz cd $(WORKDIR)/36-13-0916;c3d 36-13-0916_labels.nii.gz -binarize -o 36-13-0916_mask.nii.gz cd $(WORKDIR)/36-13-0916;../createFeatureImagesOvary.sh -d 3 -x 36-13-0916_mask.nii.gz -l3 -n pre -a 36-13-0916_grey.nii.gz -f 0x2 -o ./36-13-0916_ -r 1 -r 3 -s 2 -b 4 job37-13-0920: cd $(WORKDIR)/37-13-0920;c3d 37-13-0920_grey.nii.gz 37-13-0920_labels.nii.gz -copy-transform -o 37-13-0920_labels.nii.gz cd $(WORKDIR)/37-13-0920;c3d 37-13-0920_grey.nii.gz -orient RAI -o 37-13-0920_grey.nii.gz cd $(WORKDIR)/37-13-0920;c3d 37-13-0920_labels.nii.gz -orient RAI -o 37-13-0920_labels.nii.gz cd $(WORKDIR)/37-13-0920;c3d 37-13-0920_labels.nii.gz -binarize -o 37-13-0920_mask.nii.gz cd $(WORKDIR)/37-13-0920;../createFeatureImagesOvary.sh -d 3 -x 37-13-0920_mask.nii.gz -l3 -n pre -a 37-13-0920_grey.nii.gz -f 0x2 -o ./37-13-0920_ -r 1 -r 3 -s 2 -b 4 job38-13-0921: cd $(WORKDIR)/38-13-0921;c3d 38-13-0921_grey.nii.gz 38-13-0921_labels.nii.gz -copy-transform -o 38-13-0921_labels.nii.gz cd $(WORKDIR)/38-13-0921;c3d 38-13-0921_grey.nii.gz -orient RAI -o 38-13-0921_grey.nii.gz cd $(WORKDIR)/38-13-0921;c3d 38-13-0921_labels.nii.gz -orient RAI -o 38-13-0921_labels.nii.gz cd $(WORKDIR)/38-13-0921;c3d 38-13-0921_labels.nii.gz -binarize -o 38-13-0921_mask.nii.gz cd $(WORKDIR)/38-13-0921;../createFeatureImagesOvary.sh -d 3 -x 38-13-0921_mask.nii.gz -l3 -n pre -a 38-13-0921_grey.nii.gz -f 0x2 -o ./38-13-0921_ -r 1 -r 3 -s 2 -b 4 job39-13-0924: cd $(WORKDIR)/39-13-0924;c3d 39-13-0924_grey.nii.gz 39-13-0924_labels.nii.gz -copy-transform -o 39-13-0924_labels.nii.gz cd $(WORKDIR)/39-13-0924;c3d 39-13-0924_grey.nii.gz -orient RAI -o 39-13-0924_grey.nii.gz cd $(WORKDIR)/39-13-0924;c3d 39-13-0924_labels.nii.gz -orient RAI -o 39-13-0924_labels.nii.gz cd $(WORKDIR)/39-13-0924;c3d 39-13-0924_labels.nii.gz -binarize -o 39-13-0924_mask.nii.gz cd $(WORKDIR)/39-13-0924;../createFeatureImagesOvary.sh -d 3 -x 39-13-0924_mask.nii.gz -l3 -n pre -a 39-13-0924_grey.nii.gz -f 0x2 -o ./39-13-0924_ -r 1 -r 3 -s 2 -b 4 job40-13-1405: cd $(WORKDIR)/40-13-1405;c3d 40-13-1405_grey.nii.gz 40-13-1405_labels.nii.gz -copy-transform -o 40-13-1405_labels.nii.gz cd $(WORKDIR)/40-13-1405;c3d 40-13-1405_grey.nii.gz -orient RAI -o 40-13-1405_grey.nii.gz cd $(WORKDIR)/40-13-1405;c3d 40-13-1405_labels.nii.gz -orient RAI -o 40-13-1405_labels.nii.gz cd $(WORKDIR)/40-13-1405;c3d 40-13-1405_labels.nii.gz -binarize -o 40-13-1405_mask.nii.gz cd $(WORKDIR)/40-13-1405;../createFeatureImagesOvary.sh -d 3 -x 40-13-1405_mask.nii.gz -l3 -n pre -a 40-13-1405_grey.nii.gz -f 0x2 -o ./40-13-1405_ -r 1 -r 3 -s 2 -b 4 job41-13-1408: cd $(WORKDIR)/41-13-1408;c3d 41-13-1408_grey.nii.gz 41-13-1408_labels.nii.gz -copy-transform -o 41-13-1408_labels.nii.gz cd $(WORKDIR)/41-13-1408;c3d 41-13-1408_grey.nii.gz -orient RAI -o 41-13-1408_grey.nii.gz cd $(WORKDIR)/41-13-1408;c3d 41-13-1408_labels.nii.gz -orient RAI -o 41-13-1408_labels.nii.gz cd $(WORKDIR)/41-13-1408;c3d 41-13-1408_labels.nii.gz -binarize -o 41-13-1408_mask.nii.gz cd $(WORKDIR)/41-13-1408;../createFeatureImagesOvary.sh -d 3 -x 41-13-1408_mask.nii.gz -l3 -n pre -a 41-13-1408_grey.nii.gz -f 0x2 -o ./41-13-1408_ -r 1 -r 3 -s 2 -b 4 job42-13-1411: cd $(WORKDIR)/42-13-1411;c3d 42-13-1411_grey.nii.gz 42-13-1411_labels.nii.gz -copy-transform -o 42-13-1411_labels.nii.gz cd $(WORKDIR)/42-13-1411;c3d 42-13-1411_grey.nii.gz -orient RAI -o 42-13-1411_grey.nii.gz cd $(WORKDIR)/42-13-1411;c3d 42-13-1411_labels.nii.gz -orient RAI -o 42-13-1411_labels.nii.gz cd $(WORKDIR)/42-13-1411;c3d 42-13-1411_labels.nii.gz -binarize -o 42-13-1411_mask.nii.gz cd $(WORKDIR)/42-13-1411;../createFeatureImagesOvary.sh -d 3 -x 42-13-1411_mask.nii.gz -l3 -n pre -a 42-13-1411_grey.nii.gz -f 0x2 -o ./42-13-1411_ -r 1 -r 3 -s 2 -b 4 job43-13-1412: cd $(WORKDIR)/43-13-1412;c3d 43-13-1412_grey.nii.gz 43-13-1412_labels.nii.gz -copy-transform -o 43-13-1412_labels.nii.gz cd $(WORKDIR)/43-13-1412;c3d 43-13-1412_grey.nii.gz -orient RAI -o 43-13-1412_grey.nii.gz cd $(WORKDIR)/43-13-1412;c3d 43-13-1412_labels.nii.gz -orient RAI -o 43-13-1412_labels.nii.gz cd $(WORKDIR)/43-13-1412;c3d 43-13-1412_labels.nii.gz -binarize -o 43-13-1412_mask.nii.gz cd $(WORKDIR)/43-13-1412;../createFeatureImagesOvary.sh -d 3 -x 43-13-1412_mask.nii.gz -l3 -n pre -a 43-13-1412_grey.nii.gz -f 0x2 -o ./43-13-1412_ -r 1 -r 3 -s 2 -b 4 job44-13-1488: cd $(WORKDIR)/44-13-1488;c3d 44-13-1488_grey.nii.gz 44-13-1488_labels.nii.gz -copy-transform -o 44-13-1488_labels.nii.gz cd $(WORKDIR)/44-13-1488;c3d 44-13-1488_grey.nii.gz -orient RAI -o 44-13-1488_grey.nii.gz cd $(WORKDIR)/44-13-1488;c3d 44-13-1488_labels.nii.gz -orient RAI -o 44-13-1488_labels.nii.gz cd $(WORKDIR)/44-13-1488;c3d 44-13-1488_labels.nii.gz -binarize -o 44-13-1488_mask.nii.gz cd $(WORKDIR)/44-13-1488;../createFeatureImagesOvary.sh -d 3 -x 44-13-1488_mask.nii.gz -l3 -n pre -a 44-13-1488_grey.nii.gz -f 0x2 -o ./44-13-1488_ -r 1 -r 3 -s 2 -b 4 job45-13-1495: cd $(WORKDIR)/45-13-1495;c3d 45-13-1495_grey.nii.gz 45-13-1495_labels.nii.gz -copy-transform -o 45-13-1495_labels.nii.gz cd $(WORKDIR)/45-13-1495;c3d 45-13-1495_grey.nii.gz -orient RAI -o 45-13-1495_grey.nii.gz cd $(WORKDIR)/45-13-1495;c3d 45-13-1495_labels.nii.gz -orient RAI -o 45-13-1495_labels.nii.gz cd $(WORKDIR)/45-13-1495;c3d 45-13-1495_labels.nii.gz -binarize -o 45-13-1495_mask.nii.gz cd $(WORKDIR)/45-13-1495;../createFeatureImagesOvary.sh -d 3 -x 45-13-1495_mask.nii.gz -l3 -n pre -a 45-13-1495_grey.nii.gz -f 0x2 -o ./45-13-1495_ -r 1 -r 3 -s 2 -b 4 job46-13-1499: cd $(WORKDIR)/46-13-1499;c3d 46-13-1499_grey.nii.gz 46-13-1499_labels.nii.gz -copy-transform -o 46-13-1499_labels.nii.gz cd $(WORKDIR)/46-13-1499;c3d 46-13-1499_grey.nii.gz -orient RAI -o 46-13-1499_grey.nii.gz cd $(WORKDIR)/46-13-1499;c3d 46-13-1499_labels.nii.gz -orient RAI -o 46-13-1499_labels.nii.gz cd $(WORKDIR)/46-13-1499;c3d 46-13-1499_labels.nii.gz -binarize -o 46-13-1499_mask.nii.gz cd $(WORKDIR)/46-13-1499;../createFeatureImagesOvary.sh -d 3 -x 46-13-1499_mask.nii.gz -l3 -n pre -a 46-13-1499_grey.nii.gz -f 0x2 -o ./46-13-1499_ -r 1 -r 3 -s 2 -b 4 job47-13-1504: cd $(WORKDIR)/47-13-1504;c3d 47-13-1504_grey.nii.gz 47-13-1504_labels.nii.gz -copy-transform -o 47-13-1504_labels.nii.gz cd $(WORKDIR)/47-13-1504;c3d 47-13-1504_grey.nii.gz -orient RAI -o 47-13-1504_grey.nii.gz cd $(WORKDIR)/47-13-1504;c3d 47-13-1504_labels.nii.gz -orient RAI -o 47-13-1504_labels.nii.gz cd $(WORKDIR)/47-13-1504;c3d 47-13-1504_labels.nii.gz -binarize -o 47-13-1504_mask.nii.gz cd $(WORKDIR)/47-13-1504;../createFeatureImagesOvary.sh -d 3 -x 47-13-1504_mask.nii.gz -l3 -n pre -a 47-13-1504_grey.nii.gz -f 0x2 -o ./47-13-1504_ -r 1 -r 3 -s 2 -b 4 job48-13-1505: cd $(WORKDIR)/48-13-1505;c3d 48-13-1505_grey.nii.gz 48-13-1505_labels.nii.gz -copy-transform -o 48-13-1505_labels.nii.gz cd $(WORKDIR)/48-13-1505;c3d 48-13-1505_grey.nii.gz -orient RAI -o 48-13-1505_grey.nii.gz cd $(WORKDIR)/48-13-1505;c3d 48-13-1505_labels.nii.gz -orient RAI -o 48-13-1505_labels.nii.gz cd $(WORKDIR)/48-13-1505;c3d 48-13-1505_labels.nii.gz -binarize -o 48-13-1505_mask.nii.gz cd $(WORKDIR)/48-13-1505;../createFeatureImagesOvary.sh -d 3 -x 48-13-1505_mask.nii.gz -l3 -n pre -a 48-13-1505_grey.nii.gz -f 0x2 -o ./48-13-1505_ -r 1 -r 3 -s 2 -b 4 job49-13-1506: cd $(WORKDIR)/49-13-1506;c3d 49-13-1506_grey.nii.gz 49-13-1506_labels.nii.gz -copy-transform -o 49-13-1506_labels.nii.gz cd $(WORKDIR)/49-13-1506;c3d 49-13-1506_grey.nii.gz -orient RAI -o 49-13-1506_grey.nii.gz cd $(WORKDIR)/49-13-1506;c3d 49-13-1506_labels.nii.gz -orient RAI -o 49-13-1506_labels.nii.gz cd $(WORKDIR)/49-13-1506;c3d 49-13-1506_labels.nii.gz -binarize -o 49-13-1506_mask.nii.gz cd $(WORKDIR)/49-13-1506;../createFeatureImagesOvary.sh -d 3 -x 49-13-1506_mask.nii.gz -l3 -n pre -a 49-13-1506_grey.nii.gz -f 0x2 -o ./49-13-1506_ -r 1 -r 3 -s 2 -b 4 job50-13-1507: cd $(WORKDIR)/50-13-1507;c3d 50-13-1507_grey.nii.gz 50-13-1507_labels.nii.gz -copy-transform -o 50-13-1507_labels.nii.gz cd $(WORKDIR)/50-13-1507;c3d 50-13-1507_grey.nii.gz -orient RAI -o 50-13-1507_grey.nii.gz cd $(WORKDIR)/50-13-1507;c3d 50-13-1507_labels.nii.gz -orient RAI -o 50-13-1507_labels.nii.gz cd $(WORKDIR)/50-13-1507;c3d 50-13-1507_labels.nii.gz -binarize -o 50-13-1507_mask.nii.gz cd $(WORKDIR)/50-13-1507;../createFeatureImagesOvary.sh -d 3 -x 50-13-1507_mask.nii.gz -l3 -n pre -a 50-13-1507_grey.nii.gz -f 0x2 -o ./50-13-1507_ -r 1 -r 3 -s 2 -b 4 job51-13-1509: cd $(WORKDIR)/51-13-1509;c3d 51-13-1509_grey.nii.gz 51-13-1509_labels.nii.gz -copy-transform -o 51-13-1509_labels.nii.gz cd $(WORKDIR)/51-13-1509;c3d 51-13-1509_grey.nii.gz -orient RAI -o 51-13-1509_grey.nii.gz cd $(WORKDIR)/51-13-1509;c3d 51-13-1509_labels.nii.gz -orient RAI -o 51-13-1509_labels.nii.gz cd $(WORKDIR)/51-13-1509;c3d 51-13-1509_labels.nii.gz -binarize -o 51-13-1509_mask.nii.gz cd $(WORKDIR)/51-13-1509;../createFeatureImagesOvary.sh -d 3 -x 51-13-1509_mask.nii.gz -l3 -n pre -a 51-13-1509_grey.nii.gz -f 0x2 -o ./51-13-1509_ -r 1 -r 3 -s 2 -b 4 job52-13-1511: cd $(WORKDIR)/52-13-1511;c3d 52-13-1511_grey.nii.gz 52-13-1511_labels.nii.gz -copy-transform -o 52-13-1511_labels.nii.gz cd $(WORKDIR)/52-13-1511;c3d 52-13-1511_grey.nii.gz -orient RAI -o 52-13-1511_grey.nii.gz cd $(WORKDIR)/52-13-1511;c3d 52-13-1511_labels.nii.gz -orient RAI -o 52-13-1511_labels.nii.gz cd $(WORKDIR)/52-13-1511;c3d 52-13-1511_labels.nii.gz -binarize -o 52-13-1511_mask.nii.gz cd $(WORKDIR)/52-13-1511;../createFeatureImagesOvary.sh -d 3 -x 52-13-1511_mask.nii.gz -l3 -n pre -a 52-13-1511_grey.nii.gz -f 0x2 -o ./52-13-1511_ -r 1 -r 3 -s 2 -b 4 job53-13-2057: cd $(WORKDIR)/53-13-2057;c3d 53-13-2057_grey.nii.gz 53-13-2057_labels.nii.gz -copy-transform -o 53-13-2057_labels.nii.gz cd $(WORKDIR)/53-13-2057;c3d 53-13-2057_grey.nii.gz -orient RAI -o 53-13-2057_grey.nii.gz cd $(WORKDIR)/53-13-2057;c3d 53-13-2057_labels.nii.gz -orient RAI -o 53-13-2057_labels.nii.gz cd $(WORKDIR)/53-13-2057;c3d 53-13-2057_labels.nii.gz -binarize -o 53-13-2057_mask.nii.gz cd $(WORKDIR)/53-13-2057;../createFeatureImagesOvary.sh -d 3 -x 53-13-2057_mask.nii.gz -l3 -n pre -a 53-13-2057_grey.nii.gz -f 0x2 -o ./53-13-2057_ -r 1 -r 3 -s 2 -b 4 job54-13-2059: cd $(WORKDIR)/54-13-2059;c3d 54-13-2059_grey.nii.gz 54-13-2059_labels.nii.gz -copy-transform -o 54-13-2059_labels.nii.gz cd $(WORKDIR)/54-13-2059;c3d 54-13-2059_grey.nii.gz -orient RAI -o 54-13-2059_grey.nii.gz cd $(WORKDIR)/54-13-2059;c3d 54-13-2059_labels.nii.gz -orient RAI -o 54-13-2059_labels.nii.gz cd $(WORKDIR)/54-13-2059;c3d 54-13-2059_labels.nii.gz -binarize -o 54-13-2059_mask.nii.gz cd $(WORKDIR)/54-13-2059;../createFeatureImagesOvary.sh -d 3 -x 54-13-2059_mask.nii.gz -l3 -n pre -a 54-13-2059_grey.nii.gz -f 0x2 -o ./54-13-2059_ -r 1 -r 3 -s 2 -b 4 job55-13-2060: cd $(WORKDIR)/55-13-2060;c3d 55-13-2060_grey.nii.gz 55-13-2060_labels.nii.gz -copy-transform -o 55-13-2060_labels.nii.gz cd $(WORKDIR)/55-13-2060;c3d 55-13-2060_grey.nii.gz -orient RAI -o 55-13-2060_grey.nii.gz cd $(WORKDIR)/55-13-2060;c3d 55-13-2060_labels.nii.gz -orient RAI -o 55-13-2060_labels.nii.gz cd $(WORKDIR)/55-13-2060;c3d 55-13-2060_labels.nii.gz -binarize -o 55-13-2060_mask.nii.gz cd $(WORKDIR)/55-13-2060;../createFeatureImagesOvary.sh -d 3 -x 55-13-2060_mask.nii.gz -l3 -n pre -a 55-13-2060_grey.nii.gz -f 0x2 -o ./55-13-2060_ -r 1 -r 3 -s 2 -b 4 job56-13-2066: cd $(WORKDIR)/56-13-2066;c3d 56-13-2066_grey.nii.gz 56-13-2066_labels.nii.gz -copy-transform -o 56-13-2066_labels.nii.gz cd $(WORKDIR)/56-13-2066;c3d 56-13-2066_grey.nii.gz -orient RAI -o 56-13-2066_grey.nii.gz cd $(WORKDIR)/56-13-2066;c3d 56-13-2066_labels.nii.gz -orient RAI -o 56-13-2066_labels.nii.gz cd $(WORKDIR)/56-13-2066;c3d 56-13-2066_labels.nii.gz -binarize -o 56-13-2066_mask.nii.gz cd $(WORKDIR)/56-13-2066;../createFeatureImagesOvary.sh -d 3 -x 56-13-2066_mask.nii.gz -l3 -n pre -a 56-13-2066_grey.nii.gz -f 0x2 -o ./56-13-2066_ -r 1 -r 3 -s 2 -b 4 job57-13-2071: cd $(WORKDIR)/57-13-2071;c3d 57-13-2071_grey.nii.gz 57-13-2071_labels.nii.gz -copy-transform -o 57-13-2071_labels.nii.gz cd $(WORKDIR)/57-13-2071;c3d 57-13-2071_grey.nii.gz -orient RAI -o 57-13-2071_grey.nii.gz cd $(WORKDIR)/57-13-2071;c3d 57-13-2071_labels.nii.gz -orient RAI -o 57-13-2071_labels.nii.gz cd $(WORKDIR)/57-13-2071;c3d 57-13-2071_labels.nii.gz -binarize -o 57-13-2071_mask.nii.gz cd $(WORKDIR)/57-13-2071;../createFeatureImagesOvary.sh -d 3 -x 57-13-2071_mask.nii.gz -l3 -n pre -a 57-13-2071_grey.nii.gz -f 0x2 -o ./57-13-2071_ -r 1 -r 3 -s 2 -b 4