WORKDIR=/workarea/igilab/data/qayyum/tcga_ov


all: job40-13-1405 job41-13-1408 job42-13-1411 job43-13-1412 job44-13-1488 job45-13-1495 job46-13-1499 job47-13-1504 job48-13-1505 job49-13-1506 job5-09-1667 job50-13-1507 job51-13-1509 job52-13-1511 job53-13-2057 job54-13-2059 job55-13-2060 job56-13-2066 job57-13-2071 job6-09-1669 job7-09-1672 job8-09-1673 job9-09-1674 

#job1-09-0364 job10-09-1675 job11-09-2043 job12-09-2044 job13-09-2045 job14-09-2050 job15-09-2051 job16-09-2053 job17-09-2054 job18-09-2055 job19-13-0720 job2-09-0367 job20-13-0724 job21-13-0761 job22-13-0762 job23-13-0768 job24-13-0793 job25-13-0794 job26-13-0795 job27-13-0797 job28-13-0799 job29-13-0800 job3-09-0369 job30-13-0802 job31-13-0807 job32-13-0883 job33-13-0904 job34-13-0910 job35-13-0911 job36-13-0916 job37-13-0920 job38-13-0921 job39-13-0924 job4-09-1659  

#job1-09-0364:
	#cd $(WORKDIR)/1-09-0364;c3d 1-09-0364_grey.nii.gz 1-09-0364_labels.nii.gz -copy-transform -o 1-09-0364_labels.nii.gz
	#cd $(WORKDIR)/1-09-0364;c3d 1-09-0364_grey.nii.gz -orient RAI -o 1-09-0364_grey.nii.gz
	#cd $(WORKDIR)/1-09-0364;c3d 1-09-0364_labels.nii.gz -orient RAI -o 1-09-0364_labels.nii.gz
	#cd $(WORKDIR)/1-09-0364;c3d 1-09-0364_labels.nii.gz  -binarize -o  1-09-0364_mask.nii.gz
	#cd $(WORKDIR)/1-09-0364;../createFeatureImagesOvary.sh -d 3 -x 1-09-0364_mask.nii.gz -l3 -n pre -a 1-09-0364_grey.nii.gz -f 0x2 -o ./1-09-0364-texture_ -r 1 -r 3 -s 2 -b 4
#job10-09-1675:
	cd $(WORKDIR)/10-09-1675;c3d 10-09-1675_grey.nii.gz 10-09-1675_labels.nii.gz -copy-transform -o 10-09-1675_labels.nii.gz
	cd $(WORKDIR)/10-09-1675;c3d 10-09-1675_grey.nii.gz -orient RAI -o 10-09-1675_grey.nii.gz
	cd $(WORKDIR)/10-09-1675;c3d 10-09-1675_labels.nii.gz -orient RAI -o 10-09-1675_labels.nii.gz
	cd $(WORKDIR)/10-09-1675;c3d 10-09-1675_labels.nii.gz  -binarize -o  10-09-1675_mask.nii.gz
	cd $(WORKDIR)/10-09-1675;../createFeatureImagesOvary.sh -d 3 -x 10-09-1675_mask.nii.gz -l3 -n pre -a 10-09-1675_grey.nii.gz -f 0x2 -o ./10-09-1675-texture_ -r 1 -r 3 -s 2 -b 4
#job11-09-2043:
	cd $(WORKDIR)/11-09-2043;c3d 11-09-2043_grey.nii.gz 11-09-2043_labels.nii.gz -copy-transform -o 11-09-2043_labels.nii.gz
	cd $(WORKDIR)/11-09-2043;c3d 11-09-2043_grey.nii.gz -orient RAI -o 11-09-2043_grey.nii.gz
	cd $(WORKDIR)/11-09-2043;c3d 11-09-2043_labels.nii.gz -orient RAI -o 11-09-2043_labels.nii.gz
	cd $(WORKDIR)/11-09-2043;c3d 11-09-2043_labels.nii.gz  -binarize -o  11-09-2043_mask.nii.gz
	cd $(WORKDIR)/11-09-2043;../createFeatureImagesOvary.sh -d 3 -x 11-09-2043_mask.nii.gz -l3 -n pre -a 11-09-2043_grey.nii.gz -f 0x2 -o ./11-09-2043-texture_ -r 1 -r 3 -s 2 -b 4
#job12-09-2044:
	cd $(WORKDIR)/12-09-2044;c3d 12-09-2044_grey.nii.gz 12-09-2044_labels.nii.gz -copy-transform -o 12-09-2044_labels.nii.gz
	cd $(WORKDIR)/12-09-2044;c3d 12-09-2044_grey.nii.gz -orient RAI -o 12-09-2044_grey.nii.gz
	cd $(WORKDIR)/12-09-2044;c3d 12-09-2044_labels.nii.gz -orient RAI -o 12-09-2044_labels.nii.gz
	cd $(WORKDIR)/12-09-2044;c3d 12-09-2044_labels.nii.gz  -binarize -o  12-09-2044_mask.nii.gz
	cd $(WORKDIR)/12-09-2044;../createFeatureImagesOvary.sh -d 3 -x 12-09-2044_mask.nii.gz -l3 -n pre -a 12-09-2044_grey.nii.gz -f 0x2 -o ./12-09-2044-texture_ -r 1 -r 3 -s 2 -b 4
#job13-09-2045:
	cd $(WORKDIR)/13-09-2045;c3d 13-09-2045_grey.nii.gz 13-09-2045_labels.nii.gz -copy-transform -o 13-09-2045_labels.nii.gz
	cd $(WORKDIR)/13-09-2045;c3d 13-09-2045_grey.nii.gz -orient RAI -o 13-09-2045_grey.nii.gz
	cd $(WORKDIR)/13-09-2045;c3d 13-09-2045_labels.nii.gz -orient RAI -o 13-09-2045_labels.nii.gz
	cd $(WORKDIR)/13-09-2045;c3d 13-09-2045_labels.nii.gz  -binarize -o  13-09-2045_mask.nii.gz
	cd $(WORKDIR)/13-09-2045;../createFeatureImagesOvary.sh -d 3 -x 13-09-2045_mask.nii.gz -l3 -n pre -a 13-09-2045_grey.nii.gz -f 0x2 -o ./13-09-2045-texture_ -r 1 -r 3 -s 2 -b 4
#job14-09-2050:
	cd $(WORKDIR)/14-09-2050;c3d 14-09-2050_grey.nii.gz 14-09-2050_labels.nii.gz -copy-transform -o 14-09-2050_labels.nii.gz
	cd $(WORKDIR)/14-09-2050;c3d 14-09-2050_grey.nii.gz -orient RAI -o 14-09-2050_grey.nii.gz
	cd $(WORKDIR)/14-09-2050;c3d 14-09-2050_labels.nii.gz -orient RAI -o 14-09-2050_labels.nii.gz
	cd $(WORKDIR)/14-09-2050;c3d 14-09-2050_labels.nii.gz  -binarize -o  14-09-2050_mask.nii.gz
	cd $(WORKDIR)/14-09-2050;../createFeatureImagesOvary.sh -d 3 -x 14-09-2050_mask.nii.gz -l3 -n pre -a 14-09-2050_grey.nii.gz -f 0x2 -o ./14-09-2050-texture_ -r 1 -r 3 -s 2 -b 4
#job15-09-2051:
	cd $(WORKDIR)/15-09-2051;c3d 15-09-2051_grey.nii.gz 15-09-2051_labels.nii.gz -copy-transform -o 15-09-2051_labels.nii.gz
	cd $(WORKDIR)/15-09-2051;c3d 15-09-2051_grey.nii.gz -orient RAI -o 15-09-2051_grey.nii.gz
	cd $(WORKDIR)/15-09-2051;c3d 15-09-2051_labels.nii.gz -orient RAI -o 15-09-2051_labels.nii.gz
	cd $(WORKDIR)/15-09-2051;c3d 15-09-2051_labels.nii.gz  -binarize -o  15-09-2051_mask.nii.gz
	cd $(WORKDIR)/15-09-2051;../createFeatureImagesOvary.sh -d 3 -x 15-09-2051_mask.nii.gz -l3 -n pre -a 15-09-2051_grey.nii.gz -f 0x2 -o ./15-09-2051-texture_ -r 1 -r 3 -s 2 -b 4
#job16-09-2053:
	cd $(WORKDIR)/16-09-2053;c3d 16-09-2053_grey.nii.gz 16-09-2053_labels.nii.gz -copy-transform -o 16-09-2053_labels.nii.gz
	cd $(WORKDIR)/16-09-2053;c3d 16-09-2053_grey.nii.gz -orient RAI -o 16-09-2053_grey.nii.gz
	cd $(WORKDIR)/16-09-2053;c3d 16-09-2053_labels.nii.gz -orient RAI -o 16-09-2053_labels.nii.gz
	cd $(WORKDIR)/16-09-2053;c3d 16-09-2053_labels.nii.gz  -binarize -o  16-09-2053_mask.nii.gz
	cd $(WORKDIR)/16-09-2053;../createFeatureImagesOvary.sh -d 3 -x 16-09-2053_mask.nii.gz -l3 -n pre -a 16-09-2053_grey.nii.gz -f 0x2 -o ./16-09-2053-texture_ -r 1 -r 3 -s 2 -b 4
#job17-09-2054:
	cd $(WORKDIR)/17-09-2054;c3d 17-09-2054_grey.nii.gz 17-09-2054_labels.nii.gz -copy-transform -o 17-09-2054_labels.nii.gz
	cd $(WORKDIR)/17-09-2054;c3d 17-09-2054_grey.nii.gz -orient RAI -o 17-09-2054_grey.nii.gz
	cd $(WORKDIR)/17-09-2054;c3d 17-09-2054_labels.nii.gz -orient RAI -o 17-09-2054_labels.nii.gz
	cd $(WORKDIR)/17-09-2054;c3d 17-09-2054_labels.nii.gz  -binarize -o  17-09-2054_mask.nii.gz
	cd $(WORKDIR)/17-09-2054;../createFeatureImagesOvary.sh -d 3 -x 17-09-2054_mask.nii.gz -l3 -n pre -a 17-09-2054_grey.nii.gz -f 0x2 -o ./17-09-2054-texture_ -r 1 -r 3 -s 2 -b 4
#job18-09-2055:
	cd $(WORKDIR)/18-09-2055;c3d 18-09-2055_grey.nii.gz 18-09-2055_labels.nii.gz -copy-transform -o 18-09-2055_labels.nii.gz
	cd $(WORKDIR)/18-09-2055;c3d 18-09-2055_grey.nii.gz -orient RAI -o 18-09-2055_grey.nii.gz
	cd $(WORKDIR)/18-09-2055;c3d 18-09-2055_labels.nii.gz -orient RAI -o 18-09-2055_labels.nii.gz
	cd $(WORKDIR)/18-09-2055;c3d 18-09-2055_labels.nii.gz  -binarize -o  18-09-2055_mask.nii.gz
	cd $(WORKDIR)/18-09-2055;../createFeatureImagesOvary.sh -d 3 -x 18-09-2055_mask.nii.gz -l3 -n pre -a 18-09-2055_grey.nii.gz -f 0x2 -o ./18-09-2055-texture_ -r 1 -r 3 -s 2 -b 4
#job19-13-0720:
	cd $(WORKDIR)/19-13-0720;c3d 19-13-0720_grey.nii.gz 19-13-0720_labels.nii.gz -copy-transform -o 19-13-0720_labels.nii.gz
	cd $(WORKDIR)/19-13-0720;c3d 19-13-0720_grey.nii.gz -orient RAI -o 19-13-0720_grey.nii.gz
	cd $(WORKDIR)/19-13-0720;c3d 19-13-0720_labels.nii.gz -orient RAI -o 19-13-0720_labels.nii.gz
	cd $(WORKDIR)/19-13-0720;c3d 19-13-0720_labels.nii.gz  -binarize -o  19-13-0720_mask.nii.gz
	cd $(WORKDIR)/19-13-0720;../createFeatureImagesOvary.sh -d 3 -x 19-13-0720_mask.nii.gz -l3 -n pre -a 19-13-0720_grey.nii.gz -f 0x2 -o ./19-13-0720-texture_ -r 1 -r 3 -s 2 -b 4
#job2-09-0367:
	cd $(WORKDIR)/2-09-0367;c3d 2-09-0367_grey.nii.gz 2-09-0367_labels.nii.gz -copy-transform -o 2-09-0367_labels.nii.gz
	cd $(WORKDIR)/2-09-0367;c3d 2-09-0367_grey.nii.gz -orient RAI -o 2-09-0367_grey.nii.gz
	cd $(WORKDIR)/2-09-0367;c3d 2-09-0367_labels.nii.gz -orient RAI -o 2-09-0367_labels.nii.gz
	cd $(WORKDIR)/2-09-0367;c3d 2-09-0367_labels.nii.gz  -binarize -o  2-09-0367_mask.nii.gz
	cd $(WORKDIR)/2-09-0367;../createFeatureImagesOvary.sh -d 3 -x 2-09-0367_mask.nii.gz -l3 -n pre -a 2-09-0367_grey.nii.gz -f 0x2 -o ./2-09-0367-texture_ -r 1 -r 3 -s 2 -b 4
#job20-13-0724:
	cd $(WORKDIR)/20-13-0724;c3d 20-13-0724_grey.nii.gz 20-13-0724_labels.nii.gz -copy-transform -o 20-13-0724_labels.nii.gz
	cd $(WORKDIR)/20-13-0724;c3d 20-13-0724_grey.nii.gz -orient RAI -o 20-13-0724_grey.nii.gz
	cd $(WORKDIR)/20-13-0724;c3d 20-13-0724_labels.nii.gz -orient RAI -o 20-13-0724_labels.nii.gz
	cd $(WORKDIR)/20-13-0724;c3d 20-13-0724_labels.nii.gz  -binarize -o  20-13-0724_mask.nii.gz
	cd $(WORKDIR)/20-13-0724;../createFeatureImagesOvary.sh -d 3 -x 20-13-0724_mask.nii.gz -l3 -n pre -a 20-13-0724_grey.nii.gz -f 0x2 -o ./20-13-0724-texture_ -r 1 -r 3 -s 2 -b 4
#job21-13-0761:
	cd $(WORKDIR)/21-13-0761;c3d 21-13-0761_grey.nii.gz 21-13-0761_labels.nii.gz -copy-transform -o 21-13-0761_labels.nii.gz
	cd $(WORKDIR)/21-13-0761;c3d 21-13-0761_grey.nii.gz -orient RAI -o 21-13-0761_grey.nii.gz
	cd $(WORKDIR)/21-13-0761;c3d 21-13-0761_labels.nii.gz -orient RAI -o 21-13-0761_labels.nii.gz
	cd $(WORKDIR)/21-13-0761;c3d 21-13-0761_labels.nii.gz  -binarize -o  21-13-0761_mask.nii.gz
	cd $(WORKDIR)/21-13-0761;../createFeatureImagesOvary.sh -d 3 -x 21-13-0761_mask.nii.gz -l3 -n pre -a 21-13-0761_grey.nii.gz -f 0x2 -o ./21-13-0761-texture_ -r 1 -r 3 -s 2 -b 4
#job22-13-0762:
	cd $(WORKDIR)/22-13-0762;c3d 22-13-0762_grey.nii.gz 22-13-0762_labels.nii.gz -copy-transform -o 22-13-0762_labels.nii.gz
	cd $(WORKDIR)/22-13-0762;c3d 22-13-0762_grey.nii.gz -orient RAI -o 22-13-0762_grey.nii.gz
	cd $(WORKDIR)/22-13-0762;c3d 22-13-0762_labels.nii.gz -orient RAI -o 22-13-0762_labels.nii.gz
	cd $(WORKDIR)/22-13-0762;c3d 22-13-0762_labels.nii.gz  -binarize -o  22-13-0762_mask.nii.gz
	cd $(WORKDIR)/22-13-0762;../createFeatureImagesOvary.sh -d 3 -x 22-13-0762_mask.nii.gz -l3 -n pre -a 22-13-0762_grey.nii.gz -f 0x2 -o ./22-13-0762-texture_ -r 1 -r 3 -s 2 -b 4
#job23-13-0768:
	cd $(WORKDIR)/23-13-0768;c3d 23-13-0768_grey.nii.gz 23-13-0768_labels.nii.gz -copy-transform -o 23-13-0768_labels.nii.gz
	cd $(WORKDIR)/23-13-0768;c3d 23-13-0768_grey.nii.gz -orient RAI -o 23-13-0768_grey.nii.gz
	cd $(WORKDIR)/23-13-0768;c3d 23-13-0768_labels.nii.gz -orient RAI -o 23-13-0768_labels.nii.gz
	cd $(WORKDIR)/23-13-0768;c3d 23-13-0768_labels.nii.gz  -binarize -o  23-13-0768_mask.nii.gz
	cd $(WORKDIR)/23-13-0768;../createFeatureImagesOvary.sh -d 3 -x 23-13-0768_mask.nii.gz -l3 -n pre -a 23-13-0768_grey.nii.gz -f 0x2 -o ./23-13-0768-texture_ -r 1 -r 3 -s 2 -b 4
#job24-13-0793:
	cd $(WORKDIR)/24-13-0793;c3d 24-13-0793_grey.nii.gz 24-13-0793_labels.nii.gz -copy-transform -o 24-13-0793_labels.nii.gz
	cd $(WORKDIR)/24-13-0793;c3d 24-13-0793_grey.nii.gz -orient RAI -o 24-13-0793_grey.nii.gz
	cd $(WORKDIR)/24-13-0793;c3d 24-13-0793_labels.nii.gz -orient RAI -o 24-13-0793_labels.nii.gz
	cd $(WORKDIR)/24-13-0793;c3d 24-13-0793_labels.nii.gz  -binarize -o  24-13-0793_mask.nii.gz
	cd $(WORKDIR)/24-13-0793;../createFeatureImagesOvary.sh -d 3 -x 24-13-0793_mask.nii.gz -l3 -n pre -a 24-13-0793_grey.nii.gz -f 0x2 -o ./24-13-0793-texture_ -r 1 -r 3 -s 2 -b 4
#job25-13-0794:
	cd $(WORKDIR)/25-13-0794;c3d 25-13-0794_grey.nii.gz 25-13-0794_labels.nii.gz -copy-transform -o 25-13-0794_labels.nii.gz
	cd $(WORKDIR)/25-13-0794;c3d 25-13-0794_grey.nii.gz -orient RAI -o 25-13-0794_grey.nii.gz
	cd $(WORKDIR)/25-13-0794;c3d 25-13-0794_labels.nii.gz -orient RAI -o 25-13-0794_labels.nii.gz
	cd $(WORKDIR)/25-13-0794;c3d 25-13-0794_labels.nii.gz  -binarize -o  25-13-0794_mask.nii.gz
	cd $(WORKDIR)/25-13-0794;../createFeatureImagesOvary.sh -d 3 -x 25-13-0794_mask.nii.gz -l3 -n pre -a 25-13-0794_grey.nii.gz -f 0x2 -o ./25-13-0794-texture_ -r 1 -r 3 -s 2 -b 4
#job26-13-0795:
	cd $(WORKDIR)/26-13-0795;c3d 26-13-0795_grey.nii.gz 26-13-0795_labels.nii.gz -copy-transform -o 26-13-0795_labels.nii.gz
	cd $(WORKDIR)/26-13-0795;c3d 26-13-0795_grey.nii.gz -orient RAI -o 26-13-0795_grey.nii.gz
	cd $(WORKDIR)/26-13-0795;c3d 26-13-0795_labels.nii.gz -orient RAI -o 26-13-0795_labels.nii.gz
	cd $(WORKDIR)/26-13-0795;c3d 26-13-0795_labels.nii.gz  -binarize -o  26-13-0795_mask.nii.gz
	cd $(WORKDIR)/26-13-0795;../createFeatureImagesOvary.sh -d 3 -x 26-13-0795_mask.nii.gz -l3 -n pre -a 26-13-0795_grey.nii.gz -f 0x2 -o ./26-13-0795-texture_ -r 1 -r 3 -s 2 -b 4
#job27-13-0797:
	cd $(WORKDIR)/27-13-0797;c3d 27-13-0797_grey.nii.gz 27-13-0797_labels.nii.gz -copy-transform -o 27-13-0797_labels.nii.gz
	cd $(WORKDIR)/27-13-0797;c3d 27-13-0797_grey.nii.gz -orient RAI -o 27-13-0797_grey.nii.gz
	cd $(WORKDIR)/27-13-0797;c3d 27-13-0797_labels.nii.gz -orient RAI -o 27-13-0797_labels.nii.gz
	cd $(WORKDIR)/27-13-0797;c3d 27-13-0797_labels.nii.gz  -binarize -o  27-13-0797_mask.nii.gz
	cd $(WORKDIR)/27-13-0797;../createFeatureImagesOvary.sh -d 3 -x 27-13-0797_mask.nii.gz -l3 -n pre -a 27-13-0797_grey.nii.gz -f 0x2 -o ./27-13-0797-texture_ -r 1 -r 3 -s 2 -b 4
#job28-13-0799:
	cd $(WORKDIR)/28-13-0799;c3d 28-13-0799_grey.nii.gz 28-13-0799_labels.nii.gz -copy-transform -o 28-13-0799_labels.nii.gz
	cd $(WORKDIR)/28-13-0799;c3d 28-13-0799_grey.nii.gz -orient RAI -o 28-13-0799_grey.nii.gz
	cd $(WORKDIR)/28-13-0799;c3d 28-13-0799_labels.nii.gz -orient RAI -o 28-13-0799_labels.nii.gz
	cd $(WORKDIR)/28-13-0799;c3d 28-13-0799_labels.nii.gz  -binarize -o  28-13-0799_mask.nii.gz
	cd $(WORKDIR)/28-13-0799;../createFeatureImagesOvary.sh -d 3 -x 28-13-0799_mask.nii.gz -l3 -n pre -a 28-13-0799_grey.nii.gz -f 0x2 -o ./28-13-0799-texture_ -r 1 -r 3 -s 2 -b 4
#job29-13-0800:
	cd $(WORKDIR)/29-13-0800;c3d 29-13-0800_grey.nii.gz 29-13-0800_labels.nii.gz -copy-transform -o 29-13-0800_labels.nii.gz
	cd $(WORKDIR)/29-13-0800;c3d 29-13-0800_grey.nii.gz -orient RAI -o 29-13-0800_grey.nii.gz
	cd $(WORKDIR)/29-13-0800;c3d 29-13-0800_labels.nii.gz -orient RAI -o 29-13-0800_labels.nii.gz
	cd $(WORKDIR)/29-13-0800;c3d 29-13-0800_labels.nii.gz  -binarize -o  29-13-0800_mask.nii.gz
	cd $(WORKDIR)/29-13-0800;../createFeatureImagesOvary.sh -d 3 -x 29-13-0800_mask.nii.gz -l3 -n pre -a 29-13-0800_grey.nii.gz -f 0x2 -o ./29-13-0800-texture_ -r 1 -r 3 -s 2 -b 4
#job3-09-0369:
	cd $(WORKDIR)/3-09-0369;c3d 3-09-0369_grey.nii.gz 3-09-0369_labels.nii.gz -copy-transform -o 3-09-0369_labels.nii.gz
	cd $(WORKDIR)/3-09-0369;c3d 3-09-0369_grey.nii.gz -orient RAI -o 3-09-0369_grey.nii.gz
	cd $(WORKDIR)/3-09-0369;c3d 3-09-0369_labels.nii.gz -orient RAI -o 3-09-0369_labels.nii.gz
	cd $(WORKDIR)/3-09-0369;c3d 3-09-0369_labels.nii.gz  -binarize -o  3-09-0369_mask.nii.gz
	cd $(WORKDIR)/3-09-0369;../createFeatureImagesOvary.sh -d 3 -x 3-09-0369_mask.nii.gz -l3 -n pre -a 3-09-0369_grey.nii.gz -f 0x2 -o ./3-09-0369-texture_ -r 1 -r 3 -s 2 -b 4
#job30-13-0802:
	cd $(WORKDIR)/30-13-0802;c3d 30-13-0802_grey.nii.gz 30-13-0802_labels.nii.gz -copy-transform -o 30-13-0802_labels.nii.gz
	cd $(WORKDIR)/30-13-0802;c3d 30-13-0802_grey.nii.gz -orient RAI -o 30-13-0802_grey.nii.gz
	cd $(WORKDIR)/30-13-0802;c3d 30-13-0802_labels.nii.gz -orient RAI -o 30-13-0802_labels.nii.gz
	cd $(WORKDIR)/30-13-0802;c3d 30-13-0802_labels.nii.gz  -binarize -o  30-13-0802_mask.nii.gz
	cd $(WORKDIR)/30-13-0802;../createFeatureImagesOvary.sh -d 3 -x 30-13-0802_mask.nii.gz -l3 -n pre -a 30-13-0802_grey.nii.gz -f 0x2 -o ./30-13-0802-texture_ -r 1 -r 3 -s 2 -b 4
#job31-13-0807:
	cd $(WORKDIR)/31-13-0807;c3d 31-13-0807_grey.nii.gz 31-13-0807_labels.nii.gz -copy-transform -o 31-13-0807_labels.nii.gz
	cd $(WORKDIR)/31-13-0807;c3d 31-13-0807_grey.nii.gz -orient RAI -o 31-13-0807_grey.nii.gz
	cd $(WORKDIR)/31-13-0807;c3d 31-13-0807_labels.nii.gz -orient RAI -o 31-13-0807_labels.nii.gz
	cd $(WORKDIR)/31-13-0807;c3d 31-13-0807_labels.nii.gz  -binarize -o  31-13-0807_mask.nii.gz
	cd $(WORKDIR)/31-13-0807;../createFeatureImagesOvary.sh -d 3 -x 31-13-0807_mask.nii.gz -l3 -n pre -a 31-13-0807_grey.nii.gz -f 0x2 -o ./31-13-0807-texture_ -r 1 -r 3 -s 2 -b 4
#job32-13-0883:
	cd $(WORKDIR)/32-13-0883;c3d 32-13-0883_grey.nii.gz 32-13-0883_labels.nii.gz -copy-transform -o 32-13-0883_labels.nii.gz
	cd $(WORKDIR)/32-13-0883;c3d 32-13-0883_grey.nii.gz -orient RAI -o 32-13-0883_grey.nii.gz
	cd $(WORKDIR)/32-13-0883;c3d 32-13-0883_labels.nii.gz -orient RAI -o 32-13-0883_labels.nii.gz
	cd $(WORKDIR)/32-13-0883;c3d 32-13-0883_labels.nii.gz  -binarize -o  32-13-0883_mask.nii.gz
	cd $(WORKDIR)/32-13-0883;../createFeatureImagesOvary.sh -d 3 -x 32-13-0883_mask.nii.gz -l3 -n pre -a 32-13-0883_grey.nii.gz -f 0x2 -o ./32-13-0883-texture_ -r 1 -r 3 -s 2 -b 4
#job33-13-0904:
	cd $(WORKDIR)/33-13-0904;c3d 33-13-0904_grey.nii.gz 33-13-0904_labels.nii.gz -copy-transform -o 33-13-0904_labels.nii.gz
	cd $(WORKDIR)/33-13-0904;c3d 33-13-0904_grey.nii.gz -orient RAI -o 33-13-0904_grey.nii.gz
	cd $(WORKDIR)/33-13-0904;c3d 33-13-0904_labels.nii.gz -orient RAI -o 33-13-0904_labels.nii.gz
	cd $(WORKDIR)/33-13-0904;c3d 33-13-0904_labels.nii.gz  -binarize -o  33-13-0904_mask.nii.gz
	cd $(WORKDIR)/33-13-0904;../createFeatureImagesOvary.sh -d 3 -x 33-13-0904_mask.nii.gz -l3 -n pre -a 33-13-0904_grey.nii.gz -f 0x2 -o ./33-13-0904-texture_ -r 1 -r 3 -s 2 -b 4
#job34-13-0910:
	cd $(WORKDIR)/34-13-0910;c3d 34-13-0910_grey.nii.gz 34-13-0910_labels.nii.gz -copy-transform -o 34-13-0910_labels.nii.gz
	cd $(WORKDIR)/34-13-0910;c3d 34-13-0910_grey.nii.gz -orient RAI -o 34-13-0910_grey.nii.gz
	cd $(WORKDIR)/34-13-0910;c3d 34-13-0910_labels.nii.gz -orient RAI -o 34-13-0910_labels.nii.gz
	cd $(WORKDIR)/34-13-0910;c3d 34-13-0910_labels.nii.gz  -binarize -o  34-13-0910_mask.nii.gz
	cd $(WORKDIR)/34-13-0910;../createFeatureImagesOvary.sh -d 3 -x 34-13-0910_mask.nii.gz -l3 -n pre -a 34-13-0910_grey.nii.gz -f 0x2 -o ./34-13-0910-texture_ -r 1 -r 3 -s 2 -b 4
#job35-13-0911:
	cd $(WORKDIR)/35-13-0911;c3d 35-13-0911_grey.nii.gz 35-13-0911_labels.nii.gz -copy-transform -o 35-13-0911_labels.nii.gz
	cd $(WORKDIR)/35-13-0911;c3d 35-13-0911_grey.nii.gz -orient RAI -o 35-13-0911_grey.nii.gz
	cd $(WORKDIR)/35-13-0911;c3d 35-13-0911_labels.nii.gz -orient RAI -o 35-13-0911_labels.nii.gz
	cd $(WORKDIR)/35-13-0911;c3d 35-13-0911_labels.nii.gz  -binarize -o  35-13-0911_mask.nii.gz
	cd $(WORKDIR)/35-13-0911;../createFeatureImagesOvary.sh -d 3 -x 35-13-0911_mask.nii.gz -l3 -n pre -a 35-13-0911_grey.nii.gz -f 0x2 -o ./35-13-0911-texture_ -r 1 -r 3 -s 2 -b 4
#job36-13-0916:
	cd $(WORKDIR)/36-13-0916;c3d 36-13-0916_grey.nii.gz 36-13-0916_labels.nii.gz -copy-transform -o 36-13-0916_labels.nii.gz
	cd $(WORKDIR)/36-13-0916;c3d 36-13-0916_grey.nii.gz -orient RAI -o 36-13-0916_grey.nii.gz
	cd $(WORKDIR)/36-13-0916;c3d 36-13-0916_labels.nii.gz -orient RAI -o 36-13-0916_labels.nii.gz
	cd $(WORKDIR)/36-13-0916;c3d 36-13-0916_labels.nii.gz  -binarize -o  36-13-0916_mask.nii.gz
	cd $(WORKDIR)/36-13-0916;../createFeatureImagesOvary.sh -d 3 -x 36-13-0916_mask.nii.gz -l3 -n pre -a 36-13-0916_grey.nii.gz -f 0x2 -o ./36-13-0916-texture_ -r 1 -r 3 -s 2 -b 4
#job37-13-0920:
	cd $(WORKDIR)/37-13-0920;c3d 37-13-0920_grey.nii.gz 37-13-0920_labels.nii.gz -copy-transform -o 37-13-0920_labels.nii.gz
	cd $(WORKDIR)/37-13-0920;c3d 37-13-0920_grey.nii.gz -orient RAI -o 37-13-0920_grey.nii.gz
	cd $(WORKDIR)/37-13-0920;c3d 37-13-0920_labels.nii.gz -orient RAI -o 37-13-0920_labels.nii.gz
	cd $(WORKDIR)/37-13-0920;c3d 37-13-0920_labels.nii.gz  -binarize -o  37-13-0920_mask.nii.gz
	cd $(WORKDIR)/37-13-0920;../createFeatureImagesOvary.sh -d 3 -x 37-13-0920_mask.nii.gz -l3 -n pre -a 37-13-0920_grey.nii.gz -f 0x2 -o ./37-13-0920-texture_ -r 1 -r 3 -s 2 -b 4
#job38-13-0921:
	cd $(WORKDIR)/38-13-0921;c3d 38-13-0921_grey.nii.gz 38-13-0921_labels.nii.gz -copy-transform -o 38-13-0921_labels.nii.gz
	cd $(WORKDIR)/38-13-0921;c3d 38-13-0921_grey.nii.gz -orient RAI -o 38-13-0921_grey.nii.gz
	cd $(WORKDIR)/38-13-0921;c3d 38-13-0921_labels.nii.gz -orient RAI -o 38-13-0921_labels.nii.gz
	cd $(WORKDIR)/38-13-0921;c3d 38-13-0921_labels.nii.gz  -binarize -o  38-13-0921_mask.nii.gz
	cd $(WORKDIR)/38-13-0921;../createFeatureImagesOvary.sh -d 3 -x 38-13-0921_mask.nii.gz -l3 -n pre -a 38-13-0921_grey.nii.gz -f 0x2 -o ./38-13-0921-texture_ -r 1 -r 3 -s 2 -b 4
#job39-13-0924:
	cd $(WORKDIR)/39-13-0924;c3d 39-13-0924_grey.nii.gz 39-13-0924_labels.nii.gz -copy-transform -o 39-13-0924_labels.nii.gz
	cd $(WORKDIR)/39-13-0924;c3d 39-13-0924_grey.nii.gz -orient RAI -o 39-13-0924_grey.nii.gz
	cd $(WORKDIR)/39-13-0924;c3d 39-13-0924_labels.nii.gz -orient RAI -o 39-13-0924_labels.nii.gz
	cd $(WORKDIR)/39-13-0924;c3d 39-13-0924_labels.nii.gz  -binarize -o  39-13-0924_mask.nii.gz
	cd $(WORKDIR)/39-13-0924;../createFeatureImagesOvary.sh -d 3 -x 39-13-0924_mask.nii.gz -l3 -n pre -a 39-13-0924_grey.nii.gz -f 0x2 -o ./39-13-0924-texture_ -r 1 -r 3 -s 2 -b 4
#job4-09-1659:
	cd $(WORKDIR)/4-09-1659;c3d 4-09-1659_grey.nii.gz 4-09-1659_labels.nii.gz -copy-transform -o 4-09-1659_labels.nii.gz
	cd $(WORKDIR)/4-09-1659;c3d 4-09-1659_grey.nii.gz -orient RAI -o 4-09-1659_grey.nii.gz
	cd $(WORKDIR)/4-09-1659;c3d 4-09-1659_labels.nii.gz -orient RAI -o 4-09-1659_labels.nii.gz
	cd $(WORKDIR)/4-09-1659;c3d 4-09-1659_labels.nii.gz  -binarize -o  4-09-1659_mask.nii.gz
	cd $(WORKDIR)/4-09-1659;../createFeatureImagesOvary.sh -d 3 -x 4-09-1659_mask.nii.gz -l3 -n pre -a 4-09-1659_grey.nii.gz -f 0x2 -o ./4-09-1659-texture_ -r 1 -r 3 -s 2 -b 4
job40-13-1405:
	cd $(WORKDIR)/40-13-1405;c3d 40-13-1405_grey.nii.gz 40-13-1405_labels.nii.gz -copy-transform -o 40-13-1405_labels.nii.gz
	cd $(WORKDIR)/40-13-1405;c3d 40-13-1405_grey.nii.gz -orient RAI -o 40-13-1405_grey.nii.gz
	cd $(WORKDIR)/40-13-1405;c3d 40-13-1405_labels.nii.gz -orient RAI -o 40-13-1405_labels.nii.gz
	cd $(WORKDIR)/40-13-1405;c3d 40-13-1405_labels.nii.gz  -binarize -o  40-13-1405_mask.nii.gz
	cd $(WORKDIR)/40-13-1405;../createFeatureImagesOvary.sh -d 3 -x 40-13-1405_mask.nii.gz -l3 -n pre -a 40-13-1405_grey.nii.gz -f 0x2 -o ./40-13-1405-texture_ -r 1 -r 3 -s 2 -b 4
job41-13-1408:
	cd $(WORKDIR)/41-13-1408;c3d 41-13-1408_grey.nii.gz 41-13-1408_labels.nii.gz -copy-transform -o 41-13-1408_labels.nii.gz
	cd $(WORKDIR)/41-13-1408;c3d 41-13-1408_grey.nii.gz -orient RAI -o 41-13-1408_grey.nii.gz
	cd $(WORKDIR)/41-13-1408;c3d 41-13-1408_labels.nii.gz -orient RAI -o 41-13-1408_labels.nii.gz
	cd $(WORKDIR)/41-13-1408;c3d 41-13-1408_labels.nii.gz  -binarize -o  41-13-1408_mask.nii.gz
	cd $(WORKDIR)/41-13-1408;../createFeatureImagesOvary.sh -d 3 -x 41-13-1408_mask.nii.gz -l3 -n pre -a 41-13-1408_grey.nii.gz -f 0x2 -o ./41-13-1408-texture_ -r 1 -r 3 -s 2 -b 4
job42-13-1411:
	cd $(WORKDIR)/42-13-1411;c3d 42-13-1411_grey.nii.gz 42-13-1411_labels.nii.gz -copy-transform -o 42-13-1411_labels.nii.gz
	cd $(WORKDIR)/42-13-1411;c3d 42-13-1411_grey.nii.gz -orient RAI -o 42-13-1411_grey.nii.gz
	cd $(WORKDIR)/42-13-1411;c3d 42-13-1411_labels.nii.gz -orient RAI -o 42-13-1411_labels.nii.gz
	cd $(WORKDIR)/42-13-1411;c3d 42-13-1411_labels.nii.gz  -binarize -o  42-13-1411_mask.nii.gz
	cd $(WORKDIR)/42-13-1411;../createFeatureImagesOvary.sh -d 3 -x 42-13-1411_mask.nii.gz -l3 -n pre -a 42-13-1411_grey.nii.gz -f 0x2 -o ./42-13-1411-texture_ -r 1 -r 3 -s 2 -b 4
job43-13-1412:
	cd $(WORKDIR)/43-13-1412;c3d 43-13-1412_grey.nii.gz 43-13-1412_labels.nii.gz -copy-transform -o 43-13-1412_labels.nii.gz
	cd $(WORKDIR)/43-13-1412;c3d 43-13-1412_grey.nii.gz -orient RAI -o 43-13-1412_grey.nii.gz
	cd $(WORKDIR)/43-13-1412;c3d 43-13-1412_labels.nii.gz -orient RAI -o 43-13-1412_labels.nii.gz
	cd $(WORKDIR)/43-13-1412;c3d 43-13-1412_labels.nii.gz  -binarize -o  43-13-1412_mask.nii.gz
	cd $(WORKDIR)/43-13-1412;../createFeatureImagesOvary.sh -d 3 -x 43-13-1412_mask.nii.gz -l3 -n pre -a 43-13-1412_grey.nii.gz -f 0x2 -o ./43-13-1412-texture_ -r 1 -r 3 -s 2 -b 4
job44-13-1488:
	cd $(WORKDIR)/44-13-1488;c3d 44-13-1488_grey.nii.gz 44-13-1488_labels.nii.gz -copy-transform -o 44-13-1488_labels.nii.gz
	cd $(WORKDIR)/44-13-1488;c3d 44-13-1488_grey.nii.gz -orient RAI -o 44-13-1488_grey.nii.gz
	cd $(WORKDIR)/44-13-1488;c3d 44-13-1488_labels.nii.gz -orient RAI -o 44-13-1488_labels.nii.gz
	cd $(WORKDIR)/44-13-1488;c3d 44-13-1488_labels.nii.gz  -binarize -o  44-13-1488_mask.nii.gz
	cd $(WORKDIR)/44-13-1488;../createFeatureImagesOvary.sh -d 3 -x 44-13-1488_mask.nii.gz -l3 -n pre -a 44-13-1488_grey.nii.gz -f 0x2 -o ./44-13-1488-texture_ -r 1 -r 3 -s 2 -b 4
job45-13-1495:
	cd $(WORKDIR)/45-13-1495;c3d 45-13-1495_grey.nii.gz 45-13-1495_labels.nii.gz -copy-transform -o 45-13-1495_labels.nii.gz
	cd $(WORKDIR)/45-13-1495;c3d 45-13-1495_grey.nii.gz -orient RAI -o 45-13-1495_grey.nii.gz
	cd $(WORKDIR)/45-13-1495;c3d 45-13-1495_labels.nii.gz -orient RAI -o 45-13-1495_labels.nii.gz
	cd $(WORKDIR)/45-13-1495;c3d 45-13-1495_labels.nii.gz  -binarize -o  45-13-1495_mask.nii.gz
	cd $(WORKDIR)/45-13-1495;../createFeatureImagesOvary.sh -d 3 -x 45-13-1495_mask.nii.gz -l3 -n pre -a 45-13-1495_grey.nii.gz -f 0x2 -o ./45-13-1495-texture_ -r 1 -r 3 -s 2 -b 4
job46-13-1499:
	cd $(WORKDIR)/46-13-1499;c3d 46-13-1499_grey.nii.gz 46-13-1499_labels.nii.gz -copy-transform -o 46-13-1499_labels.nii.gz
	cd $(WORKDIR)/46-13-1499;c3d 46-13-1499_grey.nii.gz -orient RAI -o 46-13-1499_grey.nii.gz
	cd $(WORKDIR)/46-13-1499;c3d 46-13-1499_labels.nii.gz -orient RAI -o 46-13-1499_labels.nii.gz
	cd $(WORKDIR)/46-13-1499;c3d 46-13-1499_labels.nii.gz  -binarize -o  46-13-1499_mask.nii.gz
	cd $(WORKDIR)/46-13-1499;../createFeatureImagesOvary.sh -d 3 -x 46-13-1499_mask.nii.gz -l3 -n pre -a 46-13-1499_grey.nii.gz -f 0x2 -o ./46-13-1499-texture_ -r 1 -r 3 -s 2 -b 4
job47-13-1504:
	cd $(WORKDIR)/47-13-1504;c3d 47-13-1504_grey.nii.gz 47-13-1504_labels.nii.gz -copy-transform -o 47-13-1504_labels.nii.gz
	cd $(WORKDIR)/47-13-1504;c3d 47-13-1504_grey.nii.gz -orient RAI -o 47-13-1504_grey.nii.gz
	cd $(WORKDIR)/47-13-1504;c3d 47-13-1504_labels.nii.gz -orient RAI -o 47-13-1504_labels.nii.gz
	cd $(WORKDIR)/47-13-1504;c3d 47-13-1504_labels.nii.gz  -binarize -o  47-13-1504_mask.nii.gz
	cd $(WORKDIR)/47-13-1504;../createFeatureImagesOvary.sh -d 3 -x 47-13-1504_mask.nii.gz -l3 -n pre -a 47-13-1504_grey.nii.gz -f 0x2 -o ./47-13-1504-texture_ -r 1 -r 3 -s 2 -b 4
job48-13-1505:
	cd $(WORKDIR)/48-13-1505;c3d 48-13-1505_grey.nii.gz 48-13-1505_labels.nii.gz -copy-transform -o 48-13-1505_labels.nii.gz
	cd $(WORKDIR)/48-13-1505;c3d 48-13-1505_grey.nii.gz -orient RAI -o 48-13-1505_grey.nii.gz
	cd $(WORKDIR)/48-13-1505;c3d 48-13-1505_labels.nii.gz -orient RAI -o 48-13-1505_labels.nii.gz
	cd $(WORKDIR)/48-13-1505;c3d 48-13-1505_labels.nii.gz  -binarize -o  48-13-1505_mask.nii.gz
	cd $(WORKDIR)/48-13-1505;../createFeatureImagesOvary.sh -d 3 -x 48-13-1505_mask.nii.gz -l3 -n pre -a 48-13-1505_grey.nii.gz -f 0x2 -o ./48-13-1505-texture_ -r 1 -r 3 -s 2 -b 4
job49-13-1506:
	cd $(WORKDIR)/49-13-1506;c3d 49-13-1506_grey.nii.gz 49-13-1506_labels.nii.gz -copy-transform -o 49-13-1506_labels.nii.gz
	cd $(WORKDIR)/49-13-1506;c3d 49-13-1506_grey.nii.gz -orient RAI -o 49-13-1506_grey.nii.gz
	cd $(WORKDIR)/49-13-1506;c3d 49-13-1506_labels.nii.gz -orient RAI -o 49-13-1506_labels.nii.gz
	cd $(WORKDIR)/49-13-1506;c3d 49-13-1506_labels.nii.gz  -binarize -o  49-13-1506_mask.nii.gz
	cd $(WORKDIR)/49-13-1506;../createFeatureImagesOvary.sh -d 3 -x 49-13-1506_mask.nii.gz -l3 -n pre -a 49-13-1506_grey.nii.gz -f 0x2 -o ./49-13-1506-texture_ -r 1 -r 3 -s 2 -b 4
job5-09-1667:
	cd $(WORKDIR)/5-09-1667;c3d 5-09-1667_grey.nii.gz 5-09-1667_labels.nii.gz -copy-transform -o 5-09-1667_labels.nii.gz
	cd $(WORKDIR)/5-09-1667;c3d 5-09-1667_grey.nii.gz -orient RAI -o 5-09-1667_grey.nii.gz
	cd $(WORKDIR)/5-09-1667;c3d 5-09-1667_labels.nii.gz -orient RAI -o 5-09-1667_labels.nii.gz
	cd $(WORKDIR)/5-09-1667;c3d 5-09-1667_labels.nii.gz  -binarize -o  5-09-1667_mask.nii.gz
	cd $(WORKDIR)/5-09-1667;../createFeatureImagesOvary.sh -d 3 -x 5-09-1667_mask.nii.gz -l3 -n pre -a 5-09-1667_grey.nii.gz -f 0x2 -o ./5-09-1667-texture_ -r 1 -r 3 -s 2 -b 4
job50-13-1507:
	cd $(WORKDIR)/50-13-1507;c3d 50-13-1507_grey.nii.gz 50-13-1507_labels.nii.gz -copy-transform -o 50-13-1507_labels.nii.gz
	cd $(WORKDIR)/50-13-1507;c3d 50-13-1507_grey.nii.gz -orient RAI -o 50-13-1507_grey.nii.gz
	cd $(WORKDIR)/50-13-1507;c3d 50-13-1507_labels.nii.gz -orient RAI -o 50-13-1507_labels.nii.gz
	cd $(WORKDIR)/50-13-1507;c3d 50-13-1507_labels.nii.gz  -binarize -o  50-13-1507_mask.nii.gz
	cd $(WORKDIR)/50-13-1507;../createFeatureImagesOvary.sh -d 3 -x 50-13-1507_mask.nii.gz -l3 -n pre -a 50-13-1507_grey.nii.gz -f 0x2 -o ./50-13-1507-texture_ -r 1 -r 3 -s 2 -b 4
job51-13-1509:
	cd $(WORKDIR)/51-13-1509;c3d 51-13-1509_grey.nii.gz 51-13-1509_labels.nii.gz -copy-transform -o 51-13-1509_labels.nii.gz
	cd $(WORKDIR)/51-13-1509;c3d 51-13-1509_grey.nii.gz -orient RAI -o 51-13-1509_grey.nii.gz
	cd $(WORKDIR)/51-13-1509;c3d 51-13-1509_labels.nii.gz -orient RAI -o 51-13-1509_labels.nii.gz
	cd $(WORKDIR)/51-13-1509;c3d 51-13-1509_labels.nii.gz  -binarize -o  51-13-1509_mask.nii.gz
	cd $(WORKDIR)/51-13-1509;../createFeatureImagesOvary.sh -d 3 -x 51-13-1509_mask.nii.gz -l3 -n pre -a 51-13-1509_grey.nii.gz -f 0x2 -o ./51-13-1509-texture_ -r 1 -r 3 -s 2 -b 4
job52-13-1511:
	cd $(WORKDIR)/52-13-1511;c3d 52-13-1511_grey.nii.gz 52-13-1511_labels.nii.gz -copy-transform -o 52-13-1511_labels.nii.gz
	cd $(WORKDIR)/52-13-1511;c3d 52-13-1511_grey.nii.gz -orient RAI -o 52-13-1511_grey.nii.gz
	cd $(WORKDIR)/52-13-1511;c3d 52-13-1511_labels.nii.gz -orient RAI -o 52-13-1511_labels.nii.gz
	cd $(WORKDIR)/52-13-1511;c3d 52-13-1511_labels.nii.gz  -binarize -o  52-13-1511_mask.nii.gz
	cd $(WORKDIR)/52-13-1511;../createFeatureImagesOvary.sh -d 3 -x 52-13-1511_mask.nii.gz -l3 -n pre -a 52-13-1511_grey.nii.gz -f 0x2 -o ./52-13-1511-texture_ -r 1 -r 3 -s 2 -b 4
job53-13-2057:
	cd $(WORKDIR)/53-13-2057;c3d 53-13-2057_grey.nii.gz 53-13-2057_labels.nii.gz -copy-transform -o 53-13-2057_labels.nii.gz
	cd $(WORKDIR)/53-13-2057;c3d 53-13-2057_grey.nii.gz -orient RAI -o 53-13-2057_grey.nii.gz
	cd $(WORKDIR)/53-13-2057;c3d 53-13-2057_labels.nii.gz -orient RAI -o 53-13-2057_labels.nii.gz
	cd $(WORKDIR)/53-13-2057;c3d 53-13-2057_labels.nii.gz  -binarize -o  53-13-2057_mask.nii.gz
	cd $(WORKDIR)/53-13-2057;../createFeatureImagesOvary.sh -d 3 -x 53-13-2057_mask.nii.gz -l3 -n pre -a 53-13-2057_grey.nii.gz -f 0x2 -o ./53-13-2057-texture_ -r 1 -r 3 -s 2 -b 4
job54-13-2059:
	cd $(WORKDIR)/54-13-2059;c3d 54-13-2059_grey.nii.gz 54-13-2059_labels.nii.gz -copy-transform -o 54-13-2059_labels.nii.gz
	cd $(WORKDIR)/54-13-2059;c3d 54-13-2059_grey.nii.gz -orient RAI -o 54-13-2059_grey.nii.gz
	cd $(WORKDIR)/54-13-2059;c3d 54-13-2059_labels.nii.gz -orient RAI -o 54-13-2059_labels.nii.gz
	cd $(WORKDIR)/54-13-2059;c3d 54-13-2059_labels.nii.gz  -binarize -o  54-13-2059_mask.nii.gz
	cd $(WORKDIR)/54-13-2059;../createFeatureImagesOvary.sh -d 3 -x 54-13-2059_mask.nii.gz -l3 -n pre -a 54-13-2059_grey.nii.gz -f 0x2 -o ./54-13-2059-texture_ -r 1 -r 3 -s 2 -b 4
job55-13-2060:
	cd $(WORKDIR)/55-13-2060;c3d 55-13-2060_grey.nii.gz 55-13-2060_labels.nii.gz -copy-transform -o 55-13-2060_labels.nii.gz
	cd $(WORKDIR)/55-13-2060;c3d 55-13-2060_grey.nii.gz -orient RAI -o 55-13-2060_grey.nii.gz
	cd $(WORKDIR)/55-13-2060;c3d 55-13-2060_labels.nii.gz -orient RAI -o 55-13-2060_labels.nii.gz
	cd $(WORKDIR)/55-13-2060;c3d 55-13-2060_labels.nii.gz  -binarize -o  55-13-2060_mask.nii.gz
	cd $(WORKDIR)/55-13-2060;../createFeatureImagesOvary.sh -d 3 -x 55-13-2060_mask.nii.gz -l3 -n pre -a 55-13-2060_grey.nii.gz -f 0x2 -o ./55-13-2060-texture_ -r 1 -r 3 -s 2 -b 4
job56-13-2066:
	cd $(WORKDIR)/56-13-2066;c3d 56-13-2066_grey.nii.gz 56-13-2066_labels.nii.gz -copy-transform -o 56-13-2066_labels.nii.gz
	cd $(WORKDIR)/56-13-2066;c3d 56-13-2066_grey.nii.gz -orient RAI -o 56-13-2066_grey.nii.gz
	cd $(WORKDIR)/56-13-2066;c3d 56-13-2066_labels.nii.gz -orient RAI -o 56-13-2066_labels.nii.gz
	cd $(WORKDIR)/56-13-2066;c3d 56-13-2066_labels.nii.gz  -binarize -o  56-13-2066_mask.nii.gz
	cd $(WORKDIR)/56-13-2066;../createFeatureImagesOvary.sh -d 3 -x 56-13-2066_mask.nii.gz -l3 -n pre -a 56-13-2066_grey.nii.gz -f 0x2 -o ./56-13-2066-texture_ -r 1 -r 3 -s 2 -b 4
job57-13-2071:
	cd $(WORKDIR)/57-13-2071;c3d 57-13-2071_grey.nii.gz 57-13-2071_labels.nii.gz -copy-transform -o 57-13-2071_labels.nii.gz
	cd $(WORKDIR)/57-13-2071;c3d 57-13-2071_grey.nii.gz -orient RAI -o 57-13-2071_grey.nii.gz
	cd $(WORKDIR)/57-13-2071;c3d 57-13-2071_labels.nii.gz -orient RAI -o 57-13-2071_labels.nii.gz
	cd $(WORKDIR)/57-13-2071;c3d 57-13-2071_labels.nii.gz  -binarize -o  57-13-2071_mask.nii.gz
	cd $(WORKDIR)/57-13-2071;../createFeatureImagesOvary.sh -d 3 -x 57-13-2071_mask.nii.gz -l3 -n pre -a 57-13-2071_grey.nii.gz -f 0x2 -o ./57-13-2071-texture_ -r 1 -r 3 -s 2 -b 4
job6-09-1669:
	cd $(WORKDIR)/6-09-1669;c3d 6-09-1669_grey.nii.gz 6-09-1669_labels.nii.gz -copy-transform -o 6-09-1669_labels.nii.gz
	cd $(WORKDIR)/6-09-1669;c3d 6-09-1669_grey.nii.gz -orient RAI -o 6-09-1669_grey.nii.gz
	cd $(WORKDIR)/6-09-1669;c3d 6-09-1669_labels.nii.gz -orient RAI -o 6-09-1669_labels.nii.gz
	cd $(WORKDIR)/6-09-1669;c3d 6-09-1669_labels.nii.gz  -binarize -o  6-09-1669_mask.nii.gz
	cd $(WORKDIR)/6-09-1669;../createFeatureImagesOvary.sh -d 3 -x 6-09-1669_mask.nii.gz -l3 -n pre -a 6-09-1669_grey.nii.gz -f 0x2 -o ./6-09-1669-texture_ -r 1 -r 3 -s 2 -b 4
job7-09-1672:
	cd $(WORKDIR)/7-09-1672;c3d 7-09-1672_grey.nii.gz 7-09-1672_labels.nii.gz -copy-transform -o 7-09-1672_labels.nii.gz
	cd $(WORKDIR)/7-09-1672;c3d 7-09-1672_grey.nii.gz -orient RAI -o 7-09-1672_grey.nii.gz
	cd $(WORKDIR)/7-09-1672;c3d 7-09-1672_labels.nii.gz -orient RAI -o 7-09-1672_labels.nii.gz
	cd $(WORKDIR)/7-09-1672;c3d 7-09-1672_labels.nii.gz  -binarize -o  7-09-1672_mask.nii.gz
	cd $(WORKDIR)/7-09-1672;../createFeatureImagesOvary.sh -d 3 -x 7-09-1672_mask.nii.gz -l3 -n pre -a 7-09-1672_grey.nii.gz -f 0x2 -o ./7-09-1672-texture_ -r 1 -r 3 -s 2 -b 4
job8-09-1673:
	cd $(WORKDIR)/8-09-1673;c3d 8-09-1673_grey.nii.gz 8-09-1673_labels.nii.gz -copy-transform -o 8-09-1673_labels.nii.gz
	cd $(WORKDIR)/8-09-1673;c3d 8-09-1673_grey.nii.gz -orient RAI -o 8-09-1673_grey.nii.gz
	cd $(WORKDIR)/8-09-1673;c3d 8-09-1673_labels.nii.gz -orient RAI -o 8-09-1673_labels.nii.gz
	cd $(WORKDIR)/8-09-1673;c3d 8-09-1673_labels.nii.gz  -binarize -o  8-09-1673_mask.nii.gz
	cd $(WORKDIR)/8-09-1673;../createFeatureImagesOvary.sh -d 3 -x 8-09-1673_mask.nii.gz -l3 -n pre -a 8-09-1673_grey.nii.gz -f 0x2 -o ./8-09-1673-texture_ -r 1 -r 3 -s 2 -b 4
job9-09-1674:
	cd $(WORKDIR)/9-09-1674;c3d 9-09-1674_grey.nii.gz 9-09-1674_labels.nii.gz -copy-transform -o 9-09-1674_labels.nii.gz
	cd $(WORKDIR)/9-09-1674;c3d 9-09-1674_grey.nii.gz -orient RAI -o 9-09-1674_grey.nii.gz
	cd $(WORKDIR)/9-09-1674;c3d 9-09-1674_labels.nii.gz -orient RAI -o 9-09-1674_labels.nii.gz
	cd $(WORKDIR)/9-09-1674;c3d 9-09-1674_labels.nii.gz  -binarize -o  9-09-1674_mask.nii.gz
	cd $(WORKDIR)/9-09-1674;../createFeatureImagesOvary.sh -d 3 -x 9-09-1674_mask.nii.gz -l3 -n pre -a 9-09-1674_grey.nii.gz -f 0x2 -o ./9-09-1674-texture_ -r 1 -r 3 -s 2 -b 4