WORKDIR=/mnt/data/scratch/igilab/data/qayyum/tcga_ov all: job_01-09-0364_crFI job_01-09-0364_wCSV_NORMALIZED_DISTANCE job_01-09-0364_wCSV_pre_ATROPOS_GMM job_01-09-0364_wCSV_pre_ATROPOS_GMM_ECCENTRICITY job_01-09-0364_wCSV_pre_ATROPOS_GMM_ELONGATION job_01-09-0364_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE job_01-09-0364_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME job_01-09-0364_wCSV_pre_ATROPOS_GMM_POSTERIORS1 job_01-09-0364_wCSV_pre_ATROPOS_GMM_POSTERIORS2 job_01-09-0364_wCSV_pre_ATROPOS_GMM_POSTERIORS3 job_01-09-0364_wCSV_pre_ATROPOS_GMM_POSTERIORS4 job_01-09-0364_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO job_01-09-0364_wCSV_pre_ENTROPY_RADIUS_1 job_01-09-0364_wCSV_pre_ENTROPY_RADIUS_3 job_01-09-0364_wCSV_pre_MEAN_RADIUS_1 job_01-09-0364_wCSV_pre_MEAN_RADIUS_3 job_01-09-0364_wCSV_pre_NORMALIZED job_01-09-0364_wCSV_pre_SIGMA_RADIUS_1 job_01-09-0364_wCSV_pre_SIGMA_RADIUS_3 job_01-09-0364_wCSV_pre_SKEWNESS_RADIUS_1 job_01-09-0364_wCSV_pre_SKEWNESS_RADIUS_3 job_01-09-0364_wCSV_pre__DIFFERENCE job_02-09-0367_crFI job_02-09-0367_wCSV_NORMALIZED_DISTANCE job_02-09-0367_wCSV_pre_ATROPOS_GMM job_02-09-0367_wCSV_pre_ATROPOS_GMM_ECCENTRICITY job_02-09-0367_wCSV_pre_ATROPOS_GMM_ELONGATION job_02-09-0367_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE job_02-09-0367_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME job_02-09-0367_wCSV_pre_ATROPOS_GMM_POSTERIORS1 job_02-09-0367_wCSV_pre_ATROPOS_GMM_POSTERIORS2 job_02-09-0367_wCSV_pre_ATROPOS_GMM_POSTERIORS3 job_02-09-0367_wCSV_pre_ATROPOS_GMM_POSTERIORS4 job_02-09-0367_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO job_02-09-0367_wCSV_pre_ENTROPY_RADIUS_1 job_02-09-0367_wCSV_pre_ENTROPY_RADIUS_3 job_02-09-0367_wCSV_pre_MEAN_RADIUS_1 job_02-09-0367_wCSV_pre_MEAN_RADIUS_3 job_02-09-0367_wCSV_pre_NORMALIZED job_02-09-0367_wCSV_pre_SIGMA_RADIUS_1 job_02-09-0367_wCSV_pre_SIGMA_RADIUS_3 job_02-09-0367_wCSV_pre_SKEWNESS_RADIUS_1 job_02-09-0367_wCSV_pre_SKEWNESS_RADIUS_3 job_02-09-0367_wCSV_pre__DIFFERENCE job_03-09-0369_crFI job_03-09-0369_wCSV_NORMALIZED_DISTANCE job_03-09-0369_wCSV_pre_ATROPOS_GMM job_03-09-0369_wCSV_pre_ATROPOS_GMM_ECCENTRICITY job_03-09-0369_wCSV_pre_ATROPOS_GMM_ELONGATION job_03-09-0369_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE job_03-09-0369_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME job_03-09-0369_wCSV_pre_ATROPOS_GMM_POSTERIORS1 job_03-09-0369_wCSV_pre_ATROPOS_GMM_POSTERIORS2 job_03-09-0369_wCSV_pre_ATROPOS_GMM_POSTERIORS3 job_03-09-0369_wCSV_pre_ATROPOS_GMM_POSTERIORS4 job_03-09-0369_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO job_03-09-0369_wCSV_pre_ENTROPY_RADIUS_1 job_03-09-0369_wCSV_pre_ENTROPY_RADIUS_3 job_03-09-0369_wCSV_pre_MEAN_RADIUS_1 job_03-09-0369_wCSV_pre_MEAN_RADIUS_3 job_03-09-0369_wCSV_pre_NORMALIZED job_03-09-0369_wCSV_pre_SIGMA_RADIUS_1 job_03-09-0369_wCSV_pre_SIGMA_RADIUS_3 job_03-09-0369_wCSV_pre_SKEWNESS_RADIUS_1 job_03-09-0369_wCSV_pre_SKEWNESS_RADIUS_3 job_03-09-0369_wCSV_pre__DIFFERENCE job_04-09-1659_crFI job_04-09-1659_wCSV_NORMALIZED_DISTANCE job_04-09-1659_wCSV_pre_ATROPOS_GMM job_04-09-1659_wCSV_pre_ATROPOS_GMM_ECCENTRICITY job_04-09-1659_wCSV_pre_ATROPOS_GMM_ELONGATION job_04-09-1659_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE job_04-09-1659_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME job_04-09-1659_wCSV_pre_ATROPOS_GMM_POSTERIORS1 job_04-09-1659_wCSV_pre_ATROPOS_GMM_POSTERIORS2 job_04-09-1659_wCSV_pre_ATROPOS_GMM_POSTERIORS3 job_04-09-1659_wCSV_pre_ATROPOS_GMM_POSTERIORS4 job_04-09-1659_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO job_04-09-1659_wCSV_pre_ENTROPY_RADIUS_1 job_04-09-1659_wCSV_pre_ENTROPY_RADIUS_3 job_04-09-1659_wCSV_pre_MEAN_RADIUS_1 job_04-09-1659_wCSV_pre_MEAN_RADIUS_3 job_04-09-1659_wCSV_pre_NORMALIZED job_04-09-1659_wCSV_pre_SIGMA_RADIUS_1 job_04-09-1659_wCSV_pre_SIGMA_RADIUS_3 job_04-09-1659_wCSV_pre_SKEWNESS_RADIUS_1 job_04-09-1659_wCSV_pre_SKEWNESS_RADIUS_3 job_04-09-1659_wCSV_pre__DIFFERENCE job_05-09-1667_crFI job_05-09-1667_wCSV_NORMALIZED_DISTANCE job_05-09-1667_wCSV_pre_ATROPOS_GMM 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job_13-09-2045_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO job_13-09-2045_wCSV_pre_ENTROPY_RADIUS_1 job_13-09-2045_wCSV_pre_ENTROPY_RADIUS_3 job_13-09-2045_wCSV_pre_MEAN_RADIUS_1 job_13-09-2045_wCSV_pre_MEAN_RADIUS_3 job_13-09-2045_wCSV_pre_NORMALIZED job_13-09-2045_wCSV_pre_SIGMA_RADIUS_1 job_13-09-2045_wCSV_pre_SIGMA_RADIUS_3 job_13-09-2045_wCSV_pre_SKEWNESS_RADIUS_1 job_13-09-2045_wCSV_pre_SKEWNESS_RADIUS_3 job_13-09-2045_wCSV_pre__DIFFERENCE job_14-09-2050_crFI job_14-09-2050_wCSV_NORMALIZED_DISTANCE job_14-09-2050_wCSV_pre_ATROPOS_GMM job_14-09-2050_wCSV_pre_ATROPOS_GMM_ECCENTRICITY job_14-09-2050_wCSV_pre_ATROPOS_GMM_ELONGATION job_14-09-2050_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE job_14-09-2050_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME job_14-09-2050_wCSV_pre_ATROPOS_GMM_POSTERIORS1 job_14-09-2050_wCSV_pre_ATROPOS_GMM_POSTERIORS2 job_14-09-2050_wCSV_pre_ATROPOS_GMM_POSTERIORS3 job_14-09-2050_wCSV_pre_ATROPOS_GMM_POSTERIORS4 job_14-09-2050_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO job_14-09-2050_wCSV_pre_ENTROPY_RADIUS_1 job_14-09-2050_wCSV_pre_ENTROPY_RADIUS_3 job_14-09-2050_wCSV_pre_MEAN_RADIUS_1 job_14-09-2050_wCSV_pre_MEAN_RADIUS_3 job_14-09-2050_wCSV_pre_NORMALIZED job_14-09-2050_wCSV_pre_SIGMA_RADIUS_1 job_14-09-2050_wCSV_pre_SIGMA_RADIUS_3 job_14-09-2050_wCSV_pre_SKEWNESS_RADIUS_1 job_14-09-2050_wCSV_pre_SKEWNESS_RADIUS_3 job_14-09-2050_wCSV_pre__DIFFERENCE job_15-09-2051_crFI job_15-09-2051_wCSV_NORMALIZED_DISTANCE job_15-09-2051_wCSV_pre_ATROPOS_GMM job_15-09-2051_wCSV_pre_ATROPOS_GMM_ECCENTRICITY job_15-09-2051_wCSV_pre_ATROPOS_GMM_ELONGATION job_15-09-2051_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE job_15-09-2051_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME job_15-09-2051_wCSV_pre_ATROPOS_GMM_POSTERIORS1 job_15-09-2051_wCSV_pre_ATROPOS_GMM_POSTERIORS2 job_15-09-2051_wCSV_pre_ATROPOS_GMM_POSTERIORS3 job_15-09-2051_wCSV_pre_ATROPOS_GMM_POSTERIORS4 job_15-09-2051_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO job_15-09-2051_wCSV_pre_ENTROPY_RADIUS_1 job_15-09-2051_wCSV_pre_ENTROPY_RADIUS_3 job_15-09-2051_wCSV_pre_MEAN_RADIUS_1 job_15-09-2051_wCSV_pre_MEAN_RADIUS_3 job_15-09-2051_wCSV_pre_NORMALIZED job_15-09-2051_wCSV_pre_SIGMA_RADIUS_1 job_15-09-2051_wCSV_pre_SIGMA_RADIUS_3 job_15-09-2051_wCSV_pre_SKEWNESS_RADIUS_1 job_15-09-2051_wCSV_pre_SKEWNESS_RADIUS_3 job_15-09-2051_wCSV_pre__DIFFERENCE job_16-09-2053_crFI job_16-09-2053_wCSV_NORMALIZED_DISTANCE job_16-09-2053_wCSV_pre_ATROPOS_GMM job_16-09-2053_wCSV_pre_ATROPOS_GMM_ECCENTRICITY job_16-09-2053_wCSV_pre_ATROPOS_GMM_ELONGATION job_16-09-2053_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE job_16-09-2053_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME job_16-09-2053_wCSV_pre_ATROPOS_GMM_POSTERIORS1 job_16-09-2053_wCSV_pre_ATROPOS_GMM_POSTERIORS2 job_16-09-2053_wCSV_pre_ATROPOS_GMM_POSTERIORS3 job_16-09-2053_wCSV_pre_ATROPOS_GMM_POSTERIORS4 job_16-09-2053_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO job_16-09-2053_wCSV_pre_ENTROPY_RADIUS_1 job_16-09-2053_wCSV_pre_ENTROPY_RADIUS_3 job_16-09-2053_wCSV_pre_MEAN_RADIUS_1 job_16-09-2053_wCSV_pre_MEAN_RADIUS_3 job_16-09-2053_wCSV_pre_NORMALIZED job_16-09-2053_wCSV_pre_SIGMA_RADIUS_1 job_16-09-2053_wCSV_pre_SIGMA_RADIUS_3 job_16-09-2053_wCSV_pre_SKEWNESS_RADIUS_1 job_16-09-2053_wCSV_pre_SKEWNESS_RADIUS_3 job_16-09-2053_wCSV_pre__DIFFERENCE job_17-09-2054_crFI job_17-09-2054_wCSV_NORMALIZED_DISTANCE job_17-09-2054_wCSV_pre_ATROPOS_GMM job_17-09-2054_wCSV_pre_ATROPOS_GMM_ECCENTRICITY job_17-09-2054_wCSV_pre_ATROPOS_GMM_ELONGATION job_17-09-2054_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE job_17-09-2054_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME job_17-09-2054_wCSV_pre_ATROPOS_GMM_POSTERIORS1 job_17-09-2054_wCSV_pre_ATROPOS_GMM_POSTERIORS2 job_17-09-2054_wCSV_pre_ATROPOS_GMM_POSTERIORS3 job_17-09-2054_wCSV_pre_ATROPOS_GMM_POSTERIORS4 job_17-09-2054_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO job_17-09-2054_wCSV_pre_ENTROPY_RADIUS_1 job_17-09-2054_wCSV_pre_ENTROPY_RADIUS_3 job_17-09-2054_wCSV_pre_MEAN_RADIUS_1 job_17-09-2054_wCSV_pre_MEAN_RADIUS_3 job_17-09-2054_wCSV_pre_NORMALIZED job_17-09-2054_wCSV_pre_SIGMA_RADIUS_1 job_17-09-2054_wCSV_pre_SIGMA_RADIUS_3 job_17-09-2054_wCSV_pre_SKEWNESS_RADIUS_1 job_17-09-2054_wCSV_pre_SKEWNESS_RADIUS_3 job_17-09-2054_wCSV_pre__DIFFERENCE job_18-09-2055_crFI job_18-09-2055_wCSV_NORMALIZED_DISTANCE job_18-09-2055_wCSV_pre_ATROPOS_GMM job_18-09-2055_wCSV_pre_ATROPOS_GMM_ECCENTRICITY job_18-09-2055_wCSV_pre_ATROPOS_GMM_ELONGATION job_18-09-2055_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE job_18-09-2055_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME job_18-09-2055_wCSV_pre_ATROPOS_GMM_POSTERIORS1 job_18-09-2055_wCSV_pre_ATROPOS_GMM_POSTERIORS2 job_18-09-2055_wCSV_pre_ATROPOS_GMM_POSTERIORS3 job_18-09-2055_wCSV_pre_ATROPOS_GMM_POSTERIORS4 job_18-09-2055_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO job_18-09-2055_wCSV_pre_ENTROPY_RADIUS_1 job_18-09-2055_wCSV_pre_ENTROPY_RADIUS_3 job_18-09-2055_wCSV_pre_MEAN_RADIUS_1 job_18-09-2055_wCSV_pre_MEAN_RADIUS_3 job_18-09-2055_wCSV_pre_NORMALIZED job_18-09-2055_wCSV_pre_SIGMA_RADIUS_1 job_18-09-2055_wCSV_pre_SIGMA_RADIUS_3 job_18-09-2055_wCSV_pre_SKEWNESS_RADIUS_1 job_18-09-2055_wCSV_pre_SKEWNESS_RADIUS_3 job_18-09-2055_wCSV_pre__DIFFERENCE job_19-13-0720_crFI job_19-13-0720_wCSV_NORMALIZED_DISTANCE job_19-13-0720_wCSV_pre_ATROPOS_GMM job_19-13-0720_wCSV_pre_ATROPOS_GMM_ECCENTRICITY job_19-13-0720_wCSV_pre_ATROPOS_GMM_ELONGATION job_19-13-0720_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE job_19-13-0720_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME job_19-13-0720_wCSV_pre_ATROPOS_GMM_POSTERIORS1 job_19-13-0720_wCSV_pre_ATROPOS_GMM_POSTERIORS2 job_19-13-0720_wCSV_pre_ATROPOS_GMM_POSTERIORS3 job_19-13-0720_wCSV_pre_ATROPOS_GMM_POSTERIORS4 job_19-13-0720_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO job_19-13-0720_wCSV_pre_ENTROPY_RADIUS_1 job_19-13-0720_wCSV_pre_ENTROPY_RADIUS_3 job_19-13-0720_wCSV_pre_MEAN_RADIUS_1 job_19-13-0720_wCSV_pre_MEAN_RADIUS_3 job_19-13-0720_wCSV_pre_NORMALIZED job_19-13-0720_wCSV_pre_SIGMA_RADIUS_1 job_19-13-0720_wCSV_pre_SIGMA_RADIUS_3 job_19-13-0720_wCSV_pre_SKEWNESS_RADIUS_1 job_19-13-0720_wCSV_pre_SKEWNESS_RADIUS_3 job_19-13-0720_wCSV_pre__DIFFERENCE job_20-13-0724_crFI job_20-13-0724_wCSV_NORMALIZED_DISTANCE job_20-13-0724_wCSV_pre_ATROPOS_GMM job_20-13-0724_wCSV_pre_ATROPOS_GMM_ECCENTRICITY job_20-13-0724_wCSV_pre_ATROPOS_GMM_ELONGATION job_20-13-0724_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE job_20-13-0724_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME job_20-13-0724_wCSV_pre_ATROPOS_GMM_POSTERIORS1 job_20-13-0724_wCSV_pre_ATROPOS_GMM_POSTERIORS2 job_20-13-0724_wCSV_pre_ATROPOS_GMM_POSTERIORS3 job_20-13-0724_wCSV_pre_ATROPOS_GMM_POSTERIORS4 job_20-13-0724_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO job_20-13-0724_wCSV_pre_ENTROPY_RADIUS_1 job_20-13-0724_wCSV_pre_ENTROPY_RADIUS_3 job_20-13-0724_wCSV_pre_MEAN_RADIUS_1 job_20-13-0724_wCSV_pre_MEAN_RADIUS_3 job_20-13-0724_wCSV_pre_NORMALIZED job_20-13-0724_wCSV_pre_SIGMA_RADIUS_1 job_20-13-0724_wCSV_pre_SIGMA_RADIUS_3 job_20-13-0724_wCSV_pre_SKEWNESS_RADIUS_1 job_20-13-0724_wCSV_pre_SKEWNESS_RADIUS_3 job_20-13-0724_wCSV_pre__DIFFERENCE job_21-13-0761_crFI job_21-13-0761_wCSV_NORMALIZED_DISTANCE job_21-13-0761_wCSV_pre_ATROPOS_GMM job_21-13-0761_wCSV_pre_ATROPOS_GMM_ECCENTRICITY job_21-13-0761_wCSV_pre_ATROPOS_GMM_ELONGATION job_21-13-0761_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE job_21-13-0761_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME job_21-13-0761_wCSV_pre_ATROPOS_GMM_POSTERIORS1 job_21-13-0761_wCSV_pre_ATROPOS_GMM_POSTERIORS2 job_21-13-0761_wCSV_pre_ATROPOS_GMM_POSTERIORS3 job_21-13-0761_wCSV_pre_ATROPOS_GMM_POSTERIORS4 job_21-13-0761_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO job_21-13-0761_wCSV_pre_ENTROPY_RADIUS_1 job_21-13-0761_wCSV_pre_ENTROPY_RADIUS_3 job_21-13-0761_wCSV_pre_MEAN_RADIUS_1 job_21-13-0761_wCSV_pre_MEAN_RADIUS_3 job_21-13-0761_wCSV_pre_NORMALIZED job_21-13-0761_wCSV_pre_SIGMA_RADIUS_1 job_21-13-0761_wCSV_pre_SIGMA_RADIUS_3 job_21-13-0761_wCSV_pre_SKEWNESS_RADIUS_1 job_21-13-0761_wCSV_pre_SKEWNESS_RADIUS_3 job_21-13-0761_wCSV_pre__DIFFERENCE job_22-13-0762_crFI job_22-13-0762_wCSV_NORMALIZED_DISTANCE job_22-13-0762_wCSV_pre_ATROPOS_GMM job_22-13-0762_wCSV_pre_ATROPOS_GMM_ECCENTRICITY job_22-13-0762_wCSV_pre_ATROPOS_GMM_ELONGATION job_22-13-0762_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE job_22-13-0762_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME job_22-13-0762_wCSV_pre_ATROPOS_GMM_POSTERIORS1 job_22-13-0762_wCSV_pre_ATROPOS_GMM_POSTERIORS2 job_22-13-0762_wCSV_pre_ATROPOS_GMM_POSTERIORS3 job_22-13-0762_wCSV_pre_ATROPOS_GMM_POSTERIORS4 job_22-13-0762_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO job_22-13-0762_wCSV_pre_ENTROPY_RADIUS_1 job_22-13-0762_wCSV_pre_ENTROPY_RADIUS_3 job_22-13-0762_wCSV_pre_MEAN_RADIUS_1 job_22-13-0762_wCSV_pre_MEAN_RADIUS_3 job_22-13-0762_wCSV_pre_NORMALIZED job_22-13-0762_wCSV_pre_SIGMA_RADIUS_1 job_22-13-0762_wCSV_pre_SIGMA_RADIUS_3 job_22-13-0762_wCSV_pre_SKEWNESS_RADIUS_1 job_22-13-0762_wCSV_pre_SKEWNESS_RADIUS_3 job_22-13-0762_wCSV_pre__DIFFERENCE job_23-13-0768_crFI job_23-13-0768_wCSV_NORMALIZED_DISTANCE job_23-13-0768_wCSV_pre_ATROPOS_GMM job_23-13-0768_wCSV_pre_ATROPOS_GMM_ECCENTRICITY job_23-13-0768_wCSV_pre_ATROPOS_GMM_ELONGATION job_23-13-0768_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE job_23-13-0768_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME job_23-13-0768_wCSV_pre_ATROPOS_GMM_POSTERIORS1 job_23-13-0768_wCSV_pre_ATROPOS_GMM_POSTERIORS2 job_23-13-0768_wCSV_pre_ATROPOS_GMM_POSTERIORS3 job_23-13-0768_wCSV_pre_ATROPOS_GMM_POSTERIORS4 job_23-13-0768_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO job_23-13-0768_wCSV_pre_ENTROPY_RADIUS_1 job_23-13-0768_wCSV_pre_ENTROPY_RADIUS_3 job_23-13-0768_wCSV_pre_MEAN_RADIUS_1 job_23-13-0768_wCSV_pre_MEAN_RADIUS_3 job_23-13-0768_wCSV_pre_NORMALIZED job_23-13-0768_wCSV_pre_SIGMA_RADIUS_1 job_23-13-0768_wCSV_pre_SIGMA_RADIUS_3 job_23-13-0768_wCSV_pre_SKEWNESS_RADIUS_1 job_23-13-0768_wCSV_pre_SKEWNESS_RADIUS_3 job_23-13-0768_wCSV_pre__DIFFERENCE job_24-13-0793_crFI job_24-13-0793_wCSV_NORMALIZED_DISTANCE job_24-13-0793_wCSV_pre_ATROPOS_GMM job_24-13-0793_wCSV_pre_ATROPOS_GMM_ECCENTRICITY job_24-13-0793_wCSV_pre_ATROPOS_GMM_ELONGATION job_24-13-0793_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE job_24-13-0793_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME job_24-13-0793_wCSV_pre_ATROPOS_GMM_POSTERIORS1 job_24-13-0793_wCSV_pre_ATROPOS_GMM_POSTERIORS2 job_24-13-0793_wCSV_pre_ATROPOS_GMM_POSTERIORS3 job_24-13-0793_wCSV_pre_ATROPOS_GMM_POSTERIORS4 job_24-13-0793_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO job_24-13-0793_wCSV_pre_ENTROPY_RADIUS_1 job_24-13-0793_wCSV_pre_ENTROPY_RADIUS_3 job_24-13-0793_wCSV_pre_MEAN_RADIUS_1 job_24-13-0793_wCSV_pre_MEAN_RADIUS_3 job_24-13-0793_wCSV_pre_NORMALIZED job_24-13-0793_wCSV_pre_SIGMA_RADIUS_1 job_24-13-0793_wCSV_pre_SIGMA_RADIUS_3 job_24-13-0793_wCSV_pre_SKEWNESS_RADIUS_1 job_24-13-0793_wCSV_pre_SKEWNESS_RADIUS_3 job_24-13-0793_wCSV_pre__DIFFERENCE job_25-13-0794_crFI job_25-13-0794_wCSV_NORMALIZED_DISTANCE job_25-13-0794_wCSV_pre_ATROPOS_GMM job_25-13-0794_wCSV_pre_ATROPOS_GMM_ECCENTRICITY job_25-13-0794_wCSV_pre_ATROPOS_GMM_ELONGATION job_25-13-0794_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE job_25-13-0794_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME job_25-13-0794_wCSV_pre_ATROPOS_GMM_POSTERIORS1 job_25-13-0794_wCSV_pre_ATROPOS_GMM_POSTERIORS2 job_25-13-0794_wCSV_pre_ATROPOS_GMM_POSTERIORS3 job_25-13-0794_wCSV_pre_ATROPOS_GMM_POSTERIORS4 job_25-13-0794_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO job_25-13-0794_wCSV_pre_ENTROPY_RADIUS_1 job_25-13-0794_wCSV_pre_ENTROPY_RADIUS_3 job_25-13-0794_wCSV_pre_MEAN_RADIUS_1 job_25-13-0794_wCSV_pre_MEAN_RADIUS_3 job_25-13-0794_wCSV_pre_NORMALIZED job_25-13-0794_wCSV_pre_SIGMA_RADIUS_1 job_25-13-0794_wCSV_pre_SIGMA_RADIUS_3 job_25-13-0794_wCSV_pre_SKEWNESS_RADIUS_1 job_25-13-0794_wCSV_pre_SKEWNESS_RADIUS_3 job_25-13-0794_wCSV_pre__DIFFERENCE job_26-13-0795_crFI job_26-13-0795_wCSV_NORMALIZED_DISTANCE job_26-13-0795_wCSV_pre_ATROPOS_GMM job_26-13-0795_wCSV_pre_ATROPOS_GMM_ECCENTRICITY job_26-13-0795_wCSV_pre_ATROPOS_GMM_ELONGATION job_26-13-0795_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE job_26-13-0795_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME job_26-13-0795_wCSV_pre_ATROPOS_GMM_POSTERIORS1 job_26-13-0795_wCSV_pre_ATROPOS_GMM_POSTERIORS2 job_26-13-0795_wCSV_pre_ATROPOS_GMM_POSTERIORS3 job_26-13-0795_wCSV_pre_ATROPOS_GMM_POSTERIORS4 job_26-13-0795_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO job_26-13-0795_wCSV_pre_ENTROPY_RADIUS_1 job_26-13-0795_wCSV_pre_ENTROPY_RADIUS_3 job_26-13-0795_wCSV_pre_MEAN_RADIUS_1 job_26-13-0795_wCSV_pre_MEAN_RADIUS_3 job_26-13-0795_wCSV_pre_NORMALIZED job_26-13-0795_wCSV_pre_SIGMA_RADIUS_1 job_26-13-0795_wCSV_pre_SIGMA_RADIUS_3 job_26-13-0795_wCSV_pre_SKEWNESS_RADIUS_1 job_26-13-0795_wCSV_pre_SKEWNESS_RADIUS_3 job_26-13-0795_wCSV_pre__DIFFERENCE job_27-13-0797_crFI job_27-13-0797_wCSV_NORMALIZED_DISTANCE job_27-13-0797_wCSV_pre_ATROPOS_GMM job_27-13-0797_wCSV_pre_ATROPOS_GMM_ECCENTRICITY job_27-13-0797_wCSV_pre_ATROPOS_GMM_ELONGATION job_27-13-0797_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE job_27-13-0797_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME job_27-13-0797_wCSV_pre_ATROPOS_GMM_POSTERIORS1 job_27-13-0797_wCSV_pre_ATROPOS_GMM_POSTERIORS2 job_27-13-0797_wCSV_pre_ATROPOS_GMM_POSTERIORS3 job_27-13-0797_wCSV_pre_ATROPOS_GMM_POSTERIORS4 job_27-13-0797_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO job_27-13-0797_wCSV_pre_ENTROPY_RADIUS_1 job_27-13-0797_wCSV_pre_ENTROPY_RADIUS_3 job_27-13-0797_wCSV_pre_MEAN_RADIUS_1 job_27-13-0797_wCSV_pre_MEAN_RADIUS_3 job_27-13-0797_wCSV_pre_NORMALIZED job_27-13-0797_wCSV_pre_SIGMA_RADIUS_1 job_27-13-0797_wCSV_pre_SIGMA_RADIUS_3 job_27-13-0797_wCSV_pre_SKEWNESS_RADIUS_1 job_27-13-0797_wCSV_pre_SKEWNESS_RADIUS_3 job_27-13-0797_wCSV_pre__DIFFERENCE job_28-13-0799_crFI job_28-13-0799_wCSV_NORMALIZED_DISTANCE job_28-13-0799_wCSV_pre_ATROPOS_GMM job_28-13-0799_wCSV_pre_ATROPOS_GMM_ECCENTRICITY job_28-13-0799_wCSV_pre_ATROPOS_GMM_ELONGATION job_28-13-0799_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE job_28-13-0799_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME job_28-13-0799_wCSV_pre_ATROPOS_GMM_POSTERIORS1 job_28-13-0799_wCSV_pre_ATROPOS_GMM_POSTERIORS2 job_28-13-0799_wCSV_pre_ATROPOS_GMM_POSTERIORS3 job_28-13-0799_wCSV_pre_ATROPOS_GMM_POSTERIORS4 job_28-13-0799_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO job_28-13-0799_wCSV_pre_ENTROPY_RADIUS_1 job_28-13-0799_wCSV_pre_ENTROPY_RADIUS_3 job_28-13-0799_wCSV_pre_MEAN_RADIUS_1 job_28-13-0799_wCSV_pre_MEAN_RADIUS_3 job_28-13-0799_wCSV_pre_NORMALIZED job_28-13-0799_wCSV_pre_SIGMA_RADIUS_1 job_28-13-0799_wCSV_pre_SIGMA_RADIUS_3 job_28-13-0799_wCSV_pre_SKEWNESS_RADIUS_1 job_28-13-0799_wCSV_pre_SKEWNESS_RADIUS_3 job_28-13-0799_wCSV_pre__DIFFERENCE job_29-13-0800_crFI job_29-13-0800_wCSV_NORMALIZED_DISTANCE job_29-13-0800_wCSV_pre_ATROPOS_GMM job_29-13-0800_wCSV_pre_ATROPOS_GMM_ECCENTRICITY job_29-13-0800_wCSV_pre_ATROPOS_GMM_ELONGATION job_29-13-0800_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE job_29-13-0800_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME job_29-13-0800_wCSV_pre_ATROPOS_GMM_POSTERIORS1 job_29-13-0800_wCSV_pre_ATROPOS_GMM_POSTERIORS2 job_29-13-0800_wCSV_pre_ATROPOS_GMM_POSTERIORS3 job_29-13-0800_wCSV_pre_ATROPOS_GMM_POSTERIORS4 job_29-13-0800_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO job_29-13-0800_wCSV_pre_ENTROPY_RADIUS_1 job_29-13-0800_wCSV_pre_ENTROPY_RADIUS_3 job_29-13-0800_wCSV_pre_MEAN_RADIUS_1 job_29-13-0800_wCSV_pre_MEAN_RADIUS_3 job_29-13-0800_wCSV_pre_NORMALIZED job_29-13-0800_wCSV_pre_SIGMA_RADIUS_1 job_29-13-0800_wCSV_pre_SIGMA_RADIUS_3 job_29-13-0800_wCSV_pre_SKEWNESS_RADIUS_1 job_29-13-0800_wCSV_pre_SKEWNESS_RADIUS_3 job_29-13-0800_wCSV_pre__DIFFERENCE job_30-13-0802_crFI job_30-13-0802_wCSV_NORMALIZED_DISTANCE job_30-13-0802_wCSV_pre_ATROPOS_GMM job_30-13-0802_wCSV_pre_ATROPOS_GMM_ECCENTRICITY job_30-13-0802_wCSV_pre_ATROPOS_GMM_ELONGATION job_30-13-0802_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE job_30-13-0802_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME job_30-13-0802_wCSV_pre_ATROPOS_GMM_POSTERIORS1 job_30-13-0802_wCSV_pre_ATROPOS_GMM_POSTERIORS2 job_30-13-0802_wCSV_pre_ATROPOS_GMM_POSTERIORS3 job_30-13-0802_wCSV_pre_ATROPOS_GMM_POSTERIORS4 job_30-13-0802_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO job_30-13-0802_wCSV_pre_ENTROPY_RADIUS_1 job_30-13-0802_wCSV_pre_ENTROPY_RADIUS_3 job_30-13-0802_wCSV_pre_MEAN_RADIUS_1 job_30-13-0802_wCSV_pre_MEAN_RADIUS_3 job_30-13-0802_wCSV_pre_NORMALIZED job_30-13-0802_wCSV_pre_SIGMA_RADIUS_1 job_30-13-0802_wCSV_pre_SIGMA_RADIUS_3 job_30-13-0802_wCSV_pre_SKEWNESS_RADIUS_1 job_30-13-0802_wCSV_pre_SKEWNESS_RADIUS_3 job_30-13-0802_wCSV_pre__DIFFERENCE job_31-13-0807_crFI job_31-13-0807_wCSV_NORMALIZED_DISTANCE job_31-13-0807_wCSV_pre_ATROPOS_GMM job_31-13-0807_wCSV_pre_ATROPOS_GMM_ECCENTRICITY job_31-13-0807_wCSV_pre_ATROPOS_GMM_ELONGATION job_31-13-0807_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE job_31-13-0807_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME job_31-13-0807_wCSV_pre_ATROPOS_GMM_POSTERIORS1 job_31-13-0807_wCSV_pre_ATROPOS_GMM_POSTERIORS2 job_31-13-0807_wCSV_pre_ATROPOS_GMM_POSTERIORS3 job_31-13-0807_wCSV_pre_ATROPOS_GMM_POSTERIORS4 job_31-13-0807_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO job_31-13-0807_wCSV_pre_ENTROPY_RADIUS_1 job_31-13-0807_wCSV_pre_ENTROPY_RADIUS_3 job_31-13-0807_wCSV_pre_MEAN_RADIUS_1 job_31-13-0807_wCSV_pre_MEAN_RADIUS_3 job_31-13-0807_wCSV_pre_NORMALIZED job_31-13-0807_wCSV_pre_SIGMA_RADIUS_1 job_31-13-0807_wCSV_pre_SIGMA_RADIUS_3 job_31-13-0807_wCSV_pre_SKEWNESS_RADIUS_1 job_31-13-0807_wCSV_pre_SKEWNESS_RADIUS_3 job_31-13-0807_wCSV_pre__DIFFERENCE job_32-13-0883_crFI job_32-13-0883_wCSV_NORMALIZED_DISTANCE job_32-13-0883_wCSV_pre_ATROPOS_GMM job_32-13-0883_wCSV_pre_ATROPOS_GMM_ECCENTRICITY job_32-13-0883_wCSV_pre_ATROPOS_GMM_ELONGATION job_32-13-0883_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE job_32-13-0883_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME job_32-13-0883_wCSV_pre_ATROPOS_GMM_POSTERIORS1 job_32-13-0883_wCSV_pre_ATROPOS_GMM_POSTERIORS2 job_32-13-0883_wCSV_pre_ATROPOS_GMM_POSTERIORS3 job_32-13-0883_wCSV_pre_ATROPOS_GMM_POSTERIORS4 job_32-13-0883_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO job_32-13-0883_wCSV_pre_ENTROPY_RADIUS_1 job_32-13-0883_wCSV_pre_ENTROPY_RADIUS_3 job_32-13-0883_wCSV_pre_MEAN_RADIUS_1 job_32-13-0883_wCSV_pre_MEAN_RADIUS_3 job_32-13-0883_wCSV_pre_NORMALIZED job_32-13-0883_wCSV_pre_SIGMA_RADIUS_1 job_32-13-0883_wCSV_pre_SIGMA_RADIUS_3 job_32-13-0883_wCSV_pre_SKEWNESS_RADIUS_1 job_32-13-0883_wCSV_pre_SKEWNESS_RADIUS_3 job_32-13-0883_wCSV_pre__DIFFERENCE job_33-13-0904_crFI job_33-13-0904_wCSV_NORMALIZED_DISTANCE job_33-13-0904_wCSV_pre_ATROPOS_GMM job_33-13-0904_wCSV_pre_ATROPOS_GMM_ECCENTRICITY job_33-13-0904_wCSV_pre_ATROPOS_GMM_ELONGATION job_33-13-0904_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE job_33-13-0904_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME job_33-13-0904_wCSV_pre_ATROPOS_GMM_POSTERIORS1 job_33-13-0904_wCSV_pre_ATROPOS_GMM_POSTERIORS2 job_33-13-0904_wCSV_pre_ATROPOS_GMM_POSTERIORS3 job_33-13-0904_wCSV_pre_ATROPOS_GMM_POSTERIORS4 job_33-13-0904_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO job_33-13-0904_wCSV_pre_ENTROPY_RADIUS_1 job_33-13-0904_wCSV_pre_ENTROPY_RADIUS_3 job_33-13-0904_wCSV_pre_MEAN_RADIUS_1 job_33-13-0904_wCSV_pre_MEAN_RADIUS_3 job_33-13-0904_wCSV_pre_NORMALIZED job_33-13-0904_wCSV_pre_SIGMA_RADIUS_1 job_33-13-0904_wCSV_pre_SIGMA_RADIUS_3 job_33-13-0904_wCSV_pre_SKEWNESS_RADIUS_1 job_33-13-0904_wCSV_pre_SKEWNESS_RADIUS_3 job_33-13-0904_wCSV_pre__DIFFERENCE job_34-13-0910_crFI job_34-13-0910_wCSV_NORMALIZED_DISTANCE job_34-13-0910_wCSV_pre_ATROPOS_GMM job_34-13-0910_wCSV_pre_ATROPOS_GMM_ECCENTRICITY job_34-13-0910_wCSV_pre_ATROPOS_GMM_ELONGATION job_34-13-0910_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE job_34-13-0910_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME job_34-13-0910_wCSV_pre_ATROPOS_GMM_POSTERIORS1 job_34-13-0910_wCSV_pre_ATROPOS_GMM_POSTERIORS2 job_34-13-0910_wCSV_pre_ATROPOS_GMM_POSTERIORS3 job_34-13-0910_wCSV_pre_ATROPOS_GMM_POSTERIORS4 job_34-13-0910_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO job_34-13-0910_wCSV_pre_ENTROPY_RADIUS_1 job_34-13-0910_wCSV_pre_ENTROPY_RADIUS_3 job_34-13-0910_wCSV_pre_MEAN_RADIUS_1 job_34-13-0910_wCSV_pre_MEAN_RADIUS_3 job_34-13-0910_wCSV_pre_NORMALIZED job_34-13-0910_wCSV_pre_SIGMA_RADIUS_1 job_34-13-0910_wCSV_pre_SIGMA_RADIUS_3 job_34-13-0910_wCSV_pre_SKEWNESS_RADIUS_1 job_34-13-0910_wCSV_pre_SKEWNESS_RADIUS_3 job_34-13-0910_wCSV_pre__DIFFERENCE job_35-13-0911_crFI job_35-13-0911_wCSV_NORMALIZED_DISTANCE job_35-13-0911_wCSV_pre_ATROPOS_GMM job_35-13-0911_wCSV_pre_ATROPOS_GMM_ECCENTRICITY job_35-13-0911_wCSV_pre_ATROPOS_GMM_ELONGATION job_35-13-0911_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE job_35-13-0911_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME job_35-13-0911_wCSV_pre_ATROPOS_GMM_POSTERIORS1 job_35-13-0911_wCSV_pre_ATROPOS_GMM_POSTERIORS2 job_35-13-0911_wCSV_pre_ATROPOS_GMM_POSTERIORS3 job_35-13-0911_wCSV_pre_ATROPOS_GMM_POSTERIORS4 job_35-13-0911_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO job_35-13-0911_wCSV_pre_ENTROPY_RADIUS_1 job_35-13-0911_wCSV_pre_ENTROPY_RADIUS_3 job_35-13-0911_wCSV_pre_MEAN_RADIUS_1 job_35-13-0911_wCSV_pre_MEAN_RADIUS_3 job_35-13-0911_wCSV_pre_NORMALIZED job_35-13-0911_wCSV_pre_SIGMA_RADIUS_1 job_35-13-0911_wCSV_pre_SIGMA_RADIUS_3 job_35-13-0911_wCSV_pre_SKEWNESS_RADIUS_1 job_35-13-0911_wCSV_pre_SKEWNESS_RADIUS_3 job_35-13-0911_wCSV_pre__DIFFERENCE job_36-13-0916_crFI job_36-13-0916_wCSV_NORMALIZED_DISTANCE job_36-13-0916_wCSV_pre_ATROPOS_GMM job_36-13-0916_wCSV_pre_ATROPOS_GMM_ECCENTRICITY job_36-13-0916_wCSV_pre_ATROPOS_GMM_ELONGATION job_36-13-0916_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE job_36-13-0916_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME job_36-13-0916_wCSV_pre_ATROPOS_GMM_POSTERIORS1 job_36-13-0916_wCSV_pre_ATROPOS_GMM_POSTERIORS2 job_36-13-0916_wCSV_pre_ATROPOS_GMM_POSTERIORS3 job_36-13-0916_wCSV_pre_ATROPOS_GMM_POSTERIORS4 job_36-13-0916_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO job_36-13-0916_wCSV_pre_ENTROPY_RADIUS_1 job_36-13-0916_wCSV_pre_ENTROPY_RADIUS_3 job_36-13-0916_wCSV_pre_MEAN_RADIUS_1 job_36-13-0916_wCSV_pre_MEAN_RADIUS_3 job_36-13-0916_wCSV_pre_NORMALIZED job_36-13-0916_wCSV_pre_SIGMA_RADIUS_1 job_36-13-0916_wCSV_pre_SIGMA_RADIUS_3 job_36-13-0916_wCSV_pre_SKEWNESS_RADIUS_1 job_36-13-0916_wCSV_pre_SKEWNESS_RADIUS_3 job_36-13-0916_wCSV_pre__DIFFERENCE job_37-13-0920_crFI job_37-13-0920_wCSV_NORMALIZED_DISTANCE job_37-13-0920_wCSV_pre_ATROPOS_GMM job_37-13-0920_wCSV_pre_ATROPOS_GMM_ECCENTRICITY job_37-13-0920_wCSV_pre_ATROPOS_GMM_ELONGATION job_37-13-0920_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE job_37-13-0920_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME job_37-13-0920_wCSV_pre_ATROPOS_GMM_POSTERIORS1 job_37-13-0920_wCSV_pre_ATROPOS_GMM_POSTERIORS2 job_37-13-0920_wCSV_pre_ATROPOS_GMM_POSTERIORS3 job_37-13-0920_wCSV_pre_ATROPOS_GMM_POSTERIORS4 job_37-13-0920_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO job_37-13-0920_wCSV_pre_ENTROPY_RADIUS_1 job_37-13-0920_wCSV_pre_ENTROPY_RADIUS_3 job_37-13-0920_wCSV_pre_MEAN_RADIUS_1 job_37-13-0920_wCSV_pre_MEAN_RADIUS_3 job_37-13-0920_wCSV_pre_NORMALIZED job_37-13-0920_wCSV_pre_SIGMA_RADIUS_1 job_37-13-0920_wCSV_pre_SIGMA_RADIUS_3 job_37-13-0920_wCSV_pre_SKEWNESS_RADIUS_1 job_37-13-0920_wCSV_pre_SKEWNESS_RADIUS_3 job_37-13-0920_wCSV_pre__DIFFERENCE job_38-13-0921_crFI job_38-13-0921_wCSV_NORMALIZED_DISTANCE job_38-13-0921_wCSV_pre_ATROPOS_GMM job_38-13-0921_wCSV_pre_ATROPOS_GMM_ECCENTRICITY job_38-13-0921_wCSV_pre_ATROPOS_GMM_ELONGATION job_38-13-0921_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE job_38-13-0921_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME job_38-13-0921_wCSV_pre_ATROPOS_GMM_POSTERIORS1 job_38-13-0921_wCSV_pre_ATROPOS_GMM_POSTERIORS2 job_38-13-0921_wCSV_pre_ATROPOS_GMM_POSTERIORS3 job_38-13-0921_wCSV_pre_ATROPOS_GMM_POSTERIORS4 job_38-13-0921_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO job_38-13-0921_wCSV_pre_ENTROPY_RADIUS_1 job_38-13-0921_wCSV_pre_ENTROPY_RADIUS_3 job_38-13-0921_wCSV_pre_MEAN_RADIUS_1 job_38-13-0921_wCSV_pre_MEAN_RADIUS_3 job_38-13-0921_wCSV_pre_NORMALIZED job_38-13-0921_wCSV_pre_SIGMA_RADIUS_1 job_38-13-0921_wCSV_pre_SIGMA_RADIUS_3 job_38-13-0921_wCSV_pre_SKEWNESS_RADIUS_1 job_38-13-0921_wCSV_pre_SKEWNESS_RADIUS_3 job_38-13-0921_wCSV_pre__DIFFERENCE job_39-13-0924_crFI job_39-13-0924_wCSV_NORMALIZED_DISTANCE job_39-13-0924_wCSV_pre_ATROPOS_GMM job_39-13-0924_wCSV_pre_ATROPOS_GMM_ECCENTRICITY job_39-13-0924_wCSV_pre_ATROPOS_GMM_ELONGATION job_39-13-0924_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE job_39-13-0924_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME job_39-13-0924_wCSV_pre_ATROPOS_GMM_POSTERIORS1 job_39-13-0924_wCSV_pre_ATROPOS_GMM_POSTERIORS2 job_39-13-0924_wCSV_pre_ATROPOS_GMM_POSTERIORS3 job_39-13-0924_wCSV_pre_ATROPOS_GMM_POSTERIORS4 job_39-13-0924_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO job_39-13-0924_wCSV_pre_ENTROPY_RADIUS_1 job_39-13-0924_wCSV_pre_ENTROPY_RADIUS_3 job_39-13-0924_wCSV_pre_MEAN_RADIUS_1 job_39-13-0924_wCSV_pre_MEAN_RADIUS_3 job_39-13-0924_wCSV_pre_NORMALIZED job_39-13-0924_wCSV_pre_SIGMA_RADIUS_1 job_39-13-0924_wCSV_pre_SIGMA_RADIUS_3 job_39-13-0924_wCSV_pre_SKEWNESS_RADIUS_1 job_39-13-0924_wCSV_pre_SKEWNESS_RADIUS_3 job_39-13-0924_wCSV_pre__DIFFERENCE job_40-13-1405_crFI job_40-13-1405_wCSV_NORMALIZED_DISTANCE job_40-13-1405_wCSV_pre_ATROPOS_GMM job_40-13-1405_wCSV_pre_ATROPOS_GMM_ECCENTRICITY job_40-13-1405_wCSV_pre_ATROPOS_GMM_ELONGATION job_40-13-1405_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE job_40-13-1405_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME job_40-13-1405_wCSV_pre_ATROPOS_GMM_POSTERIORS1 job_40-13-1405_wCSV_pre_ATROPOS_GMM_POSTERIORS2 job_40-13-1405_wCSV_pre_ATROPOS_GMM_POSTERIORS3 job_40-13-1405_wCSV_pre_ATROPOS_GMM_POSTERIORS4 job_40-13-1405_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO job_40-13-1405_wCSV_pre_ENTROPY_RADIUS_1 job_40-13-1405_wCSV_pre_ENTROPY_RADIUS_3 job_40-13-1405_wCSV_pre_MEAN_RADIUS_1 job_40-13-1405_wCSV_pre_MEAN_RADIUS_3 job_40-13-1405_wCSV_pre_NORMALIZED job_40-13-1405_wCSV_pre_SIGMA_RADIUS_1 job_40-13-1405_wCSV_pre_SIGMA_RADIUS_3 job_40-13-1405_wCSV_pre_SKEWNESS_RADIUS_1 job_40-13-1405_wCSV_pre_SKEWNESS_RADIUS_3 job_40-13-1405_wCSV_pre__DIFFERENCE job_41-13-1408_crFI job_41-13-1408_wCSV_NORMALIZED_DISTANCE job_41-13-1408_wCSV_pre_ATROPOS_GMM job_41-13-1408_wCSV_pre_ATROPOS_GMM_ECCENTRICITY job_41-13-1408_wCSV_pre_ATROPOS_GMM_ELONGATION job_41-13-1408_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE job_41-13-1408_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME job_41-13-1408_wCSV_pre_ATROPOS_GMM_POSTERIORS1 job_41-13-1408_wCSV_pre_ATROPOS_GMM_POSTERIORS2 job_41-13-1408_wCSV_pre_ATROPOS_GMM_POSTERIORS3 job_41-13-1408_wCSV_pre_ATROPOS_GMM_POSTERIORS4 job_41-13-1408_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO job_41-13-1408_wCSV_pre_ENTROPY_RADIUS_1 job_41-13-1408_wCSV_pre_ENTROPY_RADIUS_3 job_41-13-1408_wCSV_pre_MEAN_RADIUS_1 job_41-13-1408_wCSV_pre_MEAN_RADIUS_3 job_41-13-1408_wCSV_pre_NORMALIZED job_41-13-1408_wCSV_pre_SIGMA_RADIUS_1 job_41-13-1408_wCSV_pre_SIGMA_RADIUS_3 job_41-13-1408_wCSV_pre_SKEWNESS_RADIUS_1 job_41-13-1408_wCSV_pre_SKEWNESS_RADIUS_3 job_41-13-1408_wCSV_pre__DIFFERENCE job_42-13-1411_crFI job_42-13-1411_wCSV_NORMALIZED_DISTANCE job_42-13-1411_wCSV_pre_ATROPOS_GMM job_42-13-1411_wCSV_pre_ATROPOS_GMM_ECCENTRICITY job_42-13-1411_wCSV_pre_ATROPOS_GMM_ELONGATION job_42-13-1411_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE job_42-13-1411_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME job_42-13-1411_wCSV_pre_ATROPOS_GMM_POSTERIORS1 job_42-13-1411_wCSV_pre_ATROPOS_GMM_POSTERIORS2 job_42-13-1411_wCSV_pre_ATROPOS_GMM_POSTERIORS3 job_42-13-1411_wCSV_pre_ATROPOS_GMM_POSTERIORS4 job_42-13-1411_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO job_42-13-1411_wCSV_pre_ENTROPY_RADIUS_1 job_42-13-1411_wCSV_pre_ENTROPY_RADIUS_3 job_42-13-1411_wCSV_pre_MEAN_RADIUS_1 job_42-13-1411_wCSV_pre_MEAN_RADIUS_3 job_42-13-1411_wCSV_pre_NORMALIZED job_42-13-1411_wCSV_pre_SIGMA_RADIUS_1 job_42-13-1411_wCSV_pre_SIGMA_RADIUS_3 job_42-13-1411_wCSV_pre_SKEWNESS_RADIUS_1 job_42-13-1411_wCSV_pre_SKEWNESS_RADIUS_3 job_42-13-1411_wCSV_pre__DIFFERENCE job_43-13-1412_crFI job_43-13-1412_wCSV_NORMALIZED_DISTANCE job_43-13-1412_wCSV_pre_ATROPOS_GMM job_43-13-1412_wCSV_pre_ATROPOS_GMM_ECCENTRICITY job_43-13-1412_wCSV_pre_ATROPOS_GMM_ELONGATION job_43-13-1412_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE job_43-13-1412_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME job_43-13-1412_wCSV_pre_ATROPOS_GMM_POSTERIORS1 job_43-13-1412_wCSV_pre_ATROPOS_GMM_POSTERIORS2 job_43-13-1412_wCSV_pre_ATROPOS_GMM_POSTERIORS3 job_43-13-1412_wCSV_pre_ATROPOS_GMM_POSTERIORS4 job_43-13-1412_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO job_43-13-1412_wCSV_pre_ENTROPY_RADIUS_1 job_43-13-1412_wCSV_pre_ENTROPY_RADIUS_3 job_43-13-1412_wCSV_pre_MEAN_RADIUS_1 job_43-13-1412_wCSV_pre_MEAN_RADIUS_3 job_43-13-1412_wCSV_pre_NORMALIZED job_43-13-1412_wCSV_pre_SIGMA_RADIUS_1 job_43-13-1412_wCSV_pre_SIGMA_RADIUS_3 job_43-13-1412_wCSV_pre_SKEWNESS_RADIUS_1 job_43-13-1412_wCSV_pre_SKEWNESS_RADIUS_3 job_43-13-1412_wCSV_pre__DIFFERENCE job_44-13-1488_crFI job_44-13-1488_wCSV_NORMALIZED_DISTANCE job_44-13-1488_wCSV_pre_ATROPOS_GMM job_44-13-1488_wCSV_pre_ATROPOS_GMM_ECCENTRICITY job_44-13-1488_wCSV_pre_ATROPOS_GMM_ELONGATION job_44-13-1488_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE job_44-13-1488_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME job_44-13-1488_wCSV_pre_ATROPOS_GMM_POSTERIORS1 job_44-13-1488_wCSV_pre_ATROPOS_GMM_POSTERIORS2 job_44-13-1488_wCSV_pre_ATROPOS_GMM_POSTERIORS3 job_44-13-1488_wCSV_pre_ATROPOS_GMM_POSTERIORS4 job_44-13-1488_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO job_44-13-1488_wCSV_pre_ENTROPY_RADIUS_1 job_44-13-1488_wCSV_pre_ENTROPY_RADIUS_3 job_44-13-1488_wCSV_pre_MEAN_RADIUS_1 job_44-13-1488_wCSV_pre_MEAN_RADIUS_3 job_44-13-1488_wCSV_pre_NORMALIZED job_44-13-1488_wCSV_pre_SIGMA_RADIUS_1 job_44-13-1488_wCSV_pre_SIGMA_RADIUS_3 job_44-13-1488_wCSV_pre_SKEWNESS_RADIUS_1 job_44-13-1488_wCSV_pre_SKEWNESS_RADIUS_3 job_44-13-1488_wCSV_pre__DIFFERENCE job_45-13-1495_crFI job_45-13-1495_wCSV_NORMALIZED_DISTANCE job_45-13-1495_wCSV_pre_ATROPOS_GMM job_45-13-1495_wCSV_pre_ATROPOS_GMM_ECCENTRICITY job_45-13-1495_wCSV_pre_ATROPOS_GMM_ELONGATION job_45-13-1495_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE job_45-13-1495_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME job_45-13-1495_wCSV_pre_ATROPOS_GMM_POSTERIORS1 job_45-13-1495_wCSV_pre_ATROPOS_GMM_POSTERIORS2 job_45-13-1495_wCSV_pre_ATROPOS_GMM_POSTERIORS3 job_45-13-1495_wCSV_pre_ATROPOS_GMM_POSTERIORS4 job_45-13-1495_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO job_45-13-1495_wCSV_pre_ENTROPY_RADIUS_1 job_45-13-1495_wCSV_pre_ENTROPY_RADIUS_3 job_45-13-1495_wCSV_pre_MEAN_RADIUS_1 job_45-13-1495_wCSV_pre_MEAN_RADIUS_3 job_45-13-1495_wCSV_pre_NORMALIZED job_45-13-1495_wCSV_pre_SIGMA_RADIUS_1 job_45-13-1495_wCSV_pre_SIGMA_RADIUS_3 job_45-13-1495_wCSV_pre_SKEWNESS_RADIUS_1 job_45-13-1495_wCSV_pre_SKEWNESS_RADIUS_3 job_45-13-1495_wCSV_pre__DIFFERENCE job_46-13-1499_crFI job_46-13-1499_wCSV_NORMALIZED_DISTANCE job_46-13-1499_wCSV_pre_ATROPOS_GMM job_46-13-1499_wCSV_pre_ATROPOS_GMM_ECCENTRICITY job_46-13-1499_wCSV_pre_ATROPOS_GMM_ELONGATION job_46-13-1499_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE job_46-13-1499_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME job_46-13-1499_wCSV_pre_ATROPOS_GMM_POSTERIORS1 job_46-13-1499_wCSV_pre_ATROPOS_GMM_POSTERIORS2 job_46-13-1499_wCSV_pre_ATROPOS_GMM_POSTERIORS3 job_46-13-1499_wCSV_pre_ATROPOS_GMM_POSTERIORS4 job_46-13-1499_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO job_46-13-1499_wCSV_pre_ENTROPY_RADIUS_1 job_46-13-1499_wCSV_pre_ENTROPY_RADIUS_3 job_46-13-1499_wCSV_pre_MEAN_RADIUS_1 job_46-13-1499_wCSV_pre_MEAN_RADIUS_3 job_46-13-1499_wCSV_pre_NORMALIZED job_46-13-1499_wCSV_pre_SIGMA_RADIUS_1 job_46-13-1499_wCSV_pre_SIGMA_RADIUS_3 job_46-13-1499_wCSV_pre_SKEWNESS_RADIUS_1 job_46-13-1499_wCSV_pre_SKEWNESS_RADIUS_3 job_46-13-1499_wCSV_pre__DIFFERENCE job_47-13-1504_crFI job_47-13-1504_wCSV_NORMALIZED_DISTANCE job_47-13-1504_wCSV_pre_ATROPOS_GMM job_47-13-1504_wCSV_pre_ATROPOS_GMM_ECCENTRICITY job_47-13-1504_wCSV_pre_ATROPOS_GMM_ELONGATION job_47-13-1504_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE job_47-13-1504_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME job_47-13-1504_wCSV_pre_ATROPOS_GMM_POSTERIORS1 job_47-13-1504_wCSV_pre_ATROPOS_GMM_POSTERIORS2 job_47-13-1504_wCSV_pre_ATROPOS_GMM_POSTERIORS3 job_47-13-1504_wCSV_pre_ATROPOS_GMM_POSTERIORS4 job_47-13-1504_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO job_47-13-1504_wCSV_pre_ENTROPY_RADIUS_1 job_47-13-1504_wCSV_pre_ENTROPY_RADIUS_3 job_47-13-1504_wCSV_pre_MEAN_RADIUS_1 job_47-13-1504_wCSV_pre_MEAN_RADIUS_3 job_47-13-1504_wCSV_pre_NORMALIZED job_47-13-1504_wCSV_pre_SIGMA_RADIUS_1 job_47-13-1504_wCSV_pre_SIGMA_RADIUS_3 job_47-13-1504_wCSV_pre_SKEWNESS_RADIUS_1 job_47-13-1504_wCSV_pre_SKEWNESS_RADIUS_3 job_47-13-1504_wCSV_pre__DIFFERENCE job_48-13-1505_crFI job_48-13-1505_wCSV_NORMALIZED_DISTANCE job_48-13-1505_wCSV_pre_ATROPOS_GMM job_48-13-1505_wCSV_pre_ATROPOS_GMM_ECCENTRICITY job_48-13-1505_wCSV_pre_ATROPOS_GMM_ELONGATION job_48-13-1505_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE job_48-13-1505_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME job_48-13-1505_wCSV_pre_ATROPOS_GMM_POSTERIORS1 job_48-13-1505_wCSV_pre_ATROPOS_GMM_POSTERIORS2 job_48-13-1505_wCSV_pre_ATROPOS_GMM_POSTERIORS3 job_48-13-1505_wCSV_pre_ATROPOS_GMM_POSTERIORS4 job_48-13-1505_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO job_48-13-1505_wCSV_pre_ENTROPY_RADIUS_1 job_48-13-1505_wCSV_pre_ENTROPY_RADIUS_3 job_48-13-1505_wCSV_pre_MEAN_RADIUS_1 job_48-13-1505_wCSV_pre_MEAN_RADIUS_3 job_48-13-1505_wCSV_pre_NORMALIZED job_48-13-1505_wCSV_pre_SIGMA_RADIUS_1 job_48-13-1505_wCSV_pre_SIGMA_RADIUS_3 job_48-13-1505_wCSV_pre_SKEWNESS_RADIUS_1 job_48-13-1505_wCSV_pre_SKEWNESS_RADIUS_3 job_48-13-1505_wCSV_pre__DIFFERENCE job_49-13-1506_crFI job_49-13-1506_wCSV_NORMALIZED_DISTANCE job_49-13-1506_wCSV_pre_ATROPOS_GMM job_49-13-1506_wCSV_pre_ATROPOS_GMM_ECCENTRICITY job_49-13-1506_wCSV_pre_ATROPOS_GMM_ELONGATION job_49-13-1506_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE job_49-13-1506_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME job_49-13-1506_wCSV_pre_ATROPOS_GMM_POSTERIORS1 job_49-13-1506_wCSV_pre_ATROPOS_GMM_POSTERIORS2 job_49-13-1506_wCSV_pre_ATROPOS_GMM_POSTERIORS3 job_49-13-1506_wCSV_pre_ATROPOS_GMM_POSTERIORS4 job_49-13-1506_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO job_49-13-1506_wCSV_pre_ENTROPY_RADIUS_1 job_49-13-1506_wCSV_pre_ENTROPY_RADIUS_3 job_49-13-1506_wCSV_pre_MEAN_RADIUS_1 job_49-13-1506_wCSV_pre_MEAN_RADIUS_3 job_49-13-1506_wCSV_pre_NORMALIZED job_49-13-1506_wCSV_pre_SIGMA_RADIUS_1 job_49-13-1506_wCSV_pre_SIGMA_RADIUS_3 job_49-13-1506_wCSV_pre_SKEWNESS_RADIUS_1 job_49-13-1506_wCSV_pre_SKEWNESS_RADIUS_3 job_49-13-1506_wCSV_pre__DIFFERENCE job_50-13-1507_crFI job_50-13-1507_wCSV_NORMALIZED_DISTANCE job_50-13-1507_wCSV_pre_ATROPOS_GMM job_50-13-1507_wCSV_pre_ATROPOS_GMM_ECCENTRICITY job_50-13-1507_wCSV_pre_ATROPOS_GMM_ELONGATION job_50-13-1507_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE job_50-13-1507_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME job_50-13-1507_wCSV_pre_ATROPOS_GMM_POSTERIORS1 job_50-13-1507_wCSV_pre_ATROPOS_GMM_POSTERIORS2 job_50-13-1507_wCSV_pre_ATROPOS_GMM_POSTERIORS3 job_50-13-1507_wCSV_pre_ATROPOS_GMM_POSTERIORS4 job_50-13-1507_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO job_50-13-1507_wCSV_pre_ENTROPY_RADIUS_1 job_50-13-1507_wCSV_pre_ENTROPY_RADIUS_3 job_50-13-1507_wCSV_pre_MEAN_RADIUS_1 job_50-13-1507_wCSV_pre_MEAN_RADIUS_3 job_50-13-1507_wCSV_pre_NORMALIZED job_50-13-1507_wCSV_pre_SIGMA_RADIUS_1 job_50-13-1507_wCSV_pre_SIGMA_RADIUS_3 job_50-13-1507_wCSV_pre_SKEWNESS_RADIUS_1 job_50-13-1507_wCSV_pre_SKEWNESS_RADIUS_3 job_50-13-1507_wCSV_pre__DIFFERENCE job_51-13-1509_crFI job_51-13-1509_wCSV_NORMALIZED_DISTANCE job_51-13-1509_wCSV_pre_ATROPOS_GMM job_51-13-1509_wCSV_pre_ATROPOS_GMM_ECCENTRICITY job_51-13-1509_wCSV_pre_ATROPOS_GMM_ELONGATION job_51-13-1509_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE job_51-13-1509_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME job_51-13-1509_wCSV_pre_ATROPOS_GMM_POSTERIORS1 job_51-13-1509_wCSV_pre_ATROPOS_GMM_POSTERIORS2 job_51-13-1509_wCSV_pre_ATROPOS_GMM_POSTERIORS3 job_51-13-1509_wCSV_pre_ATROPOS_GMM_POSTERIORS4 job_51-13-1509_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO job_51-13-1509_wCSV_pre_ENTROPY_RADIUS_1 job_51-13-1509_wCSV_pre_ENTROPY_RADIUS_3 job_51-13-1509_wCSV_pre_MEAN_RADIUS_1 job_51-13-1509_wCSV_pre_MEAN_RADIUS_3 job_51-13-1509_wCSV_pre_NORMALIZED job_51-13-1509_wCSV_pre_SIGMA_RADIUS_1 job_51-13-1509_wCSV_pre_SIGMA_RADIUS_3 job_51-13-1509_wCSV_pre_SKEWNESS_RADIUS_1 job_51-13-1509_wCSV_pre_SKEWNESS_RADIUS_3 job_51-13-1509_wCSV_pre__DIFFERENCE job_52-13-1511_crFI job_52-13-1511_wCSV_NORMALIZED_DISTANCE job_52-13-1511_wCSV_pre_ATROPOS_GMM job_52-13-1511_wCSV_pre_ATROPOS_GMM_ECCENTRICITY job_52-13-1511_wCSV_pre_ATROPOS_GMM_ELONGATION job_52-13-1511_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE job_52-13-1511_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME job_52-13-1511_wCSV_pre_ATROPOS_GMM_POSTERIORS1 job_52-13-1511_wCSV_pre_ATROPOS_GMM_POSTERIORS2 job_52-13-1511_wCSV_pre_ATROPOS_GMM_POSTERIORS3 job_52-13-1511_wCSV_pre_ATROPOS_GMM_POSTERIORS4 job_52-13-1511_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO job_52-13-1511_wCSV_pre_ENTROPY_RADIUS_1 job_52-13-1511_wCSV_pre_ENTROPY_RADIUS_3 job_52-13-1511_wCSV_pre_MEAN_RADIUS_1 job_52-13-1511_wCSV_pre_MEAN_RADIUS_3 job_52-13-1511_wCSV_pre_NORMALIZED job_52-13-1511_wCSV_pre_SIGMA_RADIUS_1 job_52-13-1511_wCSV_pre_SIGMA_RADIUS_3 job_52-13-1511_wCSV_pre_SKEWNESS_RADIUS_1 job_52-13-1511_wCSV_pre_SKEWNESS_RADIUS_3 job_52-13-1511_wCSV_pre__DIFFERENCE job_53-13-2057_crFI job_53-13-2057_wCSV_NORMALIZED_DISTANCE job_53-13-2057_wCSV_pre_ATROPOS_GMM job_53-13-2057_wCSV_pre_ATROPOS_GMM_ECCENTRICITY job_53-13-2057_wCSV_pre_ATROPOS_GMM_ELONGATION job_53-13-2057_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE job_53-13-2057_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME job_53-13-2057_wCSV_pre_ATROPOS_GMM_POSTERIORS1 job_53-13-2057_wCSV_pre_ATROPOS_GMM_POSTERIORS2 job_53-13-2057_wCSV_pre_ATROPOS_GMM_POSTERIORS3 job_53-13-2057_wCSV_pre_ATROPOS_GMM_POSTERIORS4 job_53-13-2057_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO job_53-13-2057_wCSV_pre_ENTROPY_RADIUS_1 job_53-13-2057_wCSV_pre_ENTROPY_RADIUS_3 job_53-13-2057_wCSV_pre_MEAN_RADIUS_1 job_53-13-2057_wCSV_pre_MEAN_RADIUS_3 job_53-13-2057_wCSV_pre_NORMALIZED job_53-13-2057_wCSV_pre_SIGMA_RADIUS_1 job_53-13-2057_wCSV_pre_SIGMA_RADIUS_3 job_53-13-2057_wCSV_pre_SKEWNESS_RADIUS_1 job_53-13-2057_wCSV_pre_SKEWNESS_RADIUS_3 job_53-13-2057_wCSV_pre__DIFFERENCE job_54-13-2059_crFI job_54-13-2059_wCSV_NORMALIZED_DISTANCE job_54-13-2059_wCSV_pre_ATROPOS_GMM job_54-13-2059_wCSV_pre_ATROPOS_GMM_ECCENTRICITY job_54-13-2059_wCSV_pre_ATROPOS_GMM_ELONGATION job_54-13-2059_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE job_54-13-2059_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME job_54-13-2059_wCSV_pre_ATROPOS_GMM_POSTERIORS1 job_54-13-2059_wCSV_pre_ATROPOS_GMM_POSTERIORS2 job_54-13-2059_wCSV_pre_ATROPOS_GMM_POSTERIORS3 job_54-13-2059_wCSV_pre_ATROPOS_GMM_POSTERIORS4 job_54-13-2059_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO job_54-13-2059_wCSV_pre_ENTROPY_RADIUS_1 job_54-13-2059_wCSV_pre_ENTROPY_RADIUS_3 job_54-13-2059_wCSV_pre_MEAN_RADIUS_1 job_54-13-2059_wCSV_pre_MEAN_RADIUS_3 job_54-13-2059_wCSV_pre_NORMALIZED job_54-13-2059_wCSV_pre_SIGMA_RADIUS_1 job_54-13-2059_wCSV_pre_SIGMA_RADIUS_3 job_54-13-2059_wCSV_pre_SKEWNESS_RADIUS_1 job_54-13-2059_wCSV_pre_SKEWNESS_RADIUS_3 job_54-13-2059_wCSV_pre__DIFFERENCE job_55-13-2060_crFI job_55-13-2060_wCSV_NORMALIZED_DISTANCE job_55-13-2060_wCSV_pre_ATROPOS_GMM job_55-13-2060_wCSV_pre_ATROPOS_GMM_ECCENTRICITY job_55-13-2060_wCSV_pre_ATROPOS_GMM_ELONGATION job_55-13-2060_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE job_55-13-2060_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME job_55-13-2060_wCSV_pre_ATROPOS_GMM_POSTERIORS1 job_55-13-2060_wCSV_pre_ATROPOS_GMM_POSTERIORS2 job_55-13-2060_wCSV_pre_ATROPOS_GMM_POSTERIORS3 job_55-13-2060_wCSV_pre_ATROPOS_GMM_POSTERIORS4 job_55-13-2060_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO job_55-13-2060_wCSV_pre_ENTROPY_RADIUS_1 job_55-13-2060_wCSV_pre_ENTROPY_RADIUS_3 job_55-13-2060_wCSV_pre_MEAN_RADIUS_1 job_55-13-2060_wCSV_pre_MEAN_RADIUS_3 job_55-13-2060_wCSV_pre_NORMALIZED job_55-13-2060_wCSV_pre_SIGMA_RADIUS_1 job_55-13-2060_wCSV_pre_SIGMA_RADIUS_3 job_55-13-2060_wCSV_pre_SKEWNESS_RADIUS_1 job_55-13-2060_wCSV_pre_SKEWNESS_RADIUS_3 job_55-13-2060_wCSV_pre__DIFFERENCE job_56-13-2066_crFI job_56-13-2066_wCSV_NORMALIZED_DISTANCE job_56-13-2066_wCSV_pre_ATROPOS_GMM job_56-13-2066_wCSV_pre_ATROPOS_GMM_ECCENTRICITY job_56-13-2066_wCSV_pre_ATROPOS_GMM_ELONGATION job_56-13-2066_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE job_56-13-2066_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME job_56-13-2066_wCSV_pre_ATROPOS_GMM_POSTERIORS1 job_56-13-2066_wCSV_pre_ATROPOS_GMM_POSTERIORS2 job_56-13-2066_wCSV_pre_ATROPOS_GMM_POSTERIORS3 job_56-13-2066_wCSV_pre_ATROPOS_GMM_POSTERIORS4 job_56-13-2066_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO job_56-13-2066_wCSV_pre_ENTROPY_RADIUS_1 job_56-13-2066_wCSV_pre_ENTROPY_RADIUS_3 job_56-13-2066_wCSV_pre_MEAN_RADIUS_1 job_56-13-2066_wCSV_pre_MEAN_RADIUS_3 job_56-13-2066_wCSV_pre_NORMALIZED job_56-13-2066_wCSV_pre_SIGMA_RADIUS_1 job_56-13-2066_wCSV_pre_SIGMA_RADIUS_3 job_56-13-2066_wCSV_pre_SKEWNESS_RADIUS_1 job_56-13-2066_wCSV_pre_SKEWNESS_RADIUS_3 job_56-13-2066_wCSV_pre__DIFFERENCE job_57-13-2071_crFI job_57-13-2071_wCSV_NORMALIZED_DISTANCE job_57-13-2071_wCSV_pre_ATROPOS_GMM job_57-13-2071_wCSV_pre_ATROPOS_GMM_ECCENTRICITY job_57-13-2071_wCSV_pre_ATROPOS_GMM_ELONGATION job_57-13-2071_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE job_57-13-2071_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME job_57-13-2071_wCSV_pre_ATROPOS_GMM_POSTERIORS1 job_57-13-2071_wCSV_pre_ATROPOS_GMM_POSTERIORS2 job_57-13-2071_wCSV_pre_ATROPOS_GMM_POSTERIORS3 job_57-13-2071_wCSV_pre_ATROPOS_GMM_POSTERIORS4 job_57-13-2071_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO job_57-13-2071_wCSV_pre_ENTROPY_RADIUS_1 job_57-13-2071_wCSV_pre_ENTROPY_RADIUS_3 job_57-13-2071_wCSV_pre_MEAN_RADIUS_1 job_57-13-2071_wCSV_pre_MEAN_RADIUS_3 job_57-13-2071_wCSV_pre_NORMALIZED job_57-13-2071_wCSV_pre_SIGMA_RADIUS_1 job_57-13-2071_wCSV_pre_SIGMA_RADIUS_3 job_57-13-2071_wCSV_pre_SKEWNESS_RADIUS_1 job_57-13-2071_wCSV_pre_SKEWNESS_RADIUS_3 job_57-13-2071_wCSV_pre__DIFFERENCE job-create-master-sheet job_01-09-0364_crFI: cd $(WORKDIR)/01-09-0364;c3d 01-09-0364_grey.nii.gz 01-09-0364_labels.nii.gz -copy-transform -o 01-09-0364_labels.nii.gz cd $(WORKDIR)/01-09-0364;c3d 01-09-0364_grey.nii.gz -orient RAI -o 01-09-0364_grey.nii.gz cd $(WORKDIR)/01-09-0364;c3d 01-09-0364_labels.nii.gz -orient RAI -o 01-09-0364_labels.nii.gz cd $(WORKDIR)/01-09-0364;c3d 01-09-0364_labels.nii.gz -binarize -o 01-09-0364_mask.nii.gz cd $(WORKDIR)/01-09-0364;../createFeatureImagesOvary.sh -d 3 -x 01-09-0364_mask.nii.gz -l3 -n pre -a 01-09-0364_grey.nii.gz -f 0x2 -o ./01-09-0364_ -r 1 -r 3 -s 2 -b 4 job_01-09-0364_wCSV_NORMALIZED_DISTANCE: cd $(WORKDIR)/01-09-0364;c3d 01-09-0364_NORMALIZED_DISTANCE.nii.gz 01-09-0364_labels.nii.gz -lstat > 01-09-0364_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/01-09-0364;sed -i "1,2d" 01-09-0364_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/01-09-0364;sed "s/\s\+/,/g" 01-09-0364_NORMALIZED_DISTANCE.txt > 01-09-0364_NORMALIZED_DISTANCE.csv cd $(WORKDIR)/01-09-0364;sed -i "s/^/01-09-0364_NORMALIZED_DISTANCE,/" 01-09-0364_NORMALIZED_DISTANCE.csv job_01-09-0364_wCSV_pre_ATROPOS_GMM: cd $(WORKDIR)/01-09-0364;c3d 01-09-0364_pre_ATROPOS_GMM.nii.gz 01-09-0364_labels.nii.gz -lstat > 01-09-0364_pre_ATROPOS_GMM.txt cd $(WORKDIR)/01-09-0364;sed -i "1,2d" 01-09-0364_pre_ATROPOS_GMM.txt cd $(WORKDIR)/01-09-0364;sed "s/\s\+/,/g" 01-09-0364_pre_ATROPOS_GMM.txt > 01-09-0364_pre_ATROPOS_GMM.csv cd $(WORKDIR)/01-09-0364;sed -i "s/^/01-09-0364_pre_ATROPOS_GMM,/" 01-09-0364_pre_ATROPOS_GMM.csv job_01-09-0364_wCSV_pre_ATROPOS_GMM_ECCENTRICITY: cd $(WORKDIR)/01-09-0364;c3d 01-09-0364_pre_ATROPOS_GMM_ECCENTRICITY.nii.gz 01-09-0364_labels.nii.gz -lstat > 01-09-0364_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/01-09-0364;sed -i "1,2d" 01-09-0364_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/01-09-0364;sed "s/\s\+/,/g" 01-09-0364_pre_ATROPOS_GMM_ECCENTRICITY.txt > 01-09-0364_pre_ATROPOS_GMM_ECCENTRICITY.csv cd $(WORKDIR)/01-09-0364;sed -i "s/^/01-09-0364_pre_ATROPOS_GMM_ECCENTRICITY,/" 01-09-0364_pre_ATROPOS_GMM_ECCENTRICITY.csv job_01-09-0364_wCSV_pre_ATROPOS_GMM_ELONGATION: cd $(WORKDIR)/01-09-0364;c3d 01-09-0364_pre_ATROPOS_GMM_ELONGATION.nii.gz 01-09-0364_labels.nii.gz -lstat > 01-09-0364_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/01-09-0364;sed -i "1,2d" 01-09-0364_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/01-09-0364;sed "s/\s\+/,/g" 01-09-0364_pre_ATROPOS_GMM_ELONGATION.txt > 01-09-0364_pre_ATROPOS_GMM_ELONGATION.csv cd $(WORKDIR)/01-09-0364;sed -i "s/^/01-09-0364_pre_ATROPOS_GMM_ELONGATION,/" 01-09-0364_pre_ATROPOS_GMM_ELONGATION.csv job_01-09-0364_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE: cd $(WORKDIR)/01-09-0364;c3d 01-09-0364_pre_ATROPOS_GMM_LABEL3_DISTANCE.nii.gz 01-09-0364_labels.nii.gz -lstat > 01-09-0364_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/01-09-0364;sed -i "1,2d" 01-09-0364_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/01-09-0364;sed "s/\s\+/,/g" 01-09-0364_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt > 01-09-0364_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv cd $(WORKDIR)/01-09-0364;sed -i "s/^/01-09-0364_pre_ATROPOS_GMM_LABEL3_DISTANCE,/" 01-09-0364_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv job_01-09-0364_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME: cd $(WORKDIR)/01-09-0364;c3d 01-09-0364_pre_ATROPOS_GMM_PHYSICAL_VOLUME.nii.gz 01-09-0364_labels.nii.gz -lstat > 01-09-0364_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/01-09-0364;sed -i "1,2d" 01-09-0364_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/01-09-0364;sed "s/\s\+/,/g" 01-09-0364_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt > 01-09-0364_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv cd $(WORKDIR)/01-09-0364;sed -i "s/^/01-09-0364_pre_ATROPOS_GMM_PHYSICAL_VOLUME,/" 01-09-0364_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv job_01-09-0364_wCSV_pre_ATROPOS_GMM_POSTERIORS1: cd $(WORKDIR)/01-09-0364;c3d 01-09-0364_pre_ATROPOS_GMM_POSTERIORS1.nii.gz 01-09-0364_labels.nii.gz -lstat > 01-09-0364_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/01-09-0364;sed -i "1,2d" 01-09-0364_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/01-09-0364;sed "s/\s\+/,/g" 01-09-0364_pre_ATROPOS_GMM_POSTERIORS1.txt > 01-09-0364_pre_ATROPOS_GMM_POSTERIORS1.csv cd $(WORKDIR)/01-09-0364;sed -i "s/^/01-09-0364_pre_ATROPOS_GMM_POSTERIORS1,/" 01-09-0364_pre_ATROPOS_GMM_POSTERIORS1.csv job_01-09-0364_wCSV_pre_ATROPOS_GMM_POSTERIORS2: cd $(WORKDIR)/01-09-0364;c3d 01-09-0364_pre_ATROPOS_GMM_POSTERIORS2.nii.gz 01-09-0364_labels.nii.gz -lstat > 01-09-0364_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/01-09-0364;sed -i "1,2d" 01-09-0364_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/01-09-0364;sed "s/\s\+/,/g" 01-09-0364_pre_ATROPOS_GMM_POSTERIORS2.txt > 01-09-0364_pre_ATROPOS_GMM_POSTERIORS2.csv cd $(WORKDIR)/01-09-0364;sed -i "s/^/01-09-0364_pre_ATROPOS_GMM_POSTERIORS2,/" 01-09-0364_pre_ATROPOS_GMM_POSTERIORS2.csv job_01-09-0364_wCSV_pre_ATROPOS_GMM_POSTERIORS3: cd $(WORKDIR)/01-09-0364;c3d 01-09-0364_pre_ATROPOS_GMM_POSTERIORS3.nii.gz 01-09-0364_labels.nii.gz -lstat > 01-09-0364_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/01-09-0364;sed -i "1,2d" 01-09-0364_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/01-09-0364;sed "s/\s\+/,/g" 01-09-0364_pre_ATROPOS_GMM_POSTERIORS3.txt > 01-09-0364_pre_ATROPOS_GMM_POSTERIORS3.csv cd $(WORKDIR)/01-09-0364;sed -i "s/^/01-09-0364_pre_ATROPOS_GMM_POSTERIORS3,/" 01-09-0364_pre_ATROPOS_GMM_POSTERIORS3.csv job_01-09-0364_wCSV_pre_ATROPOS_GMM_POSTERIORS4: cd $(WORKDIR)/01-09-0364;c3d 01-09-0364_pre_ATROPOS_GMM_POSTERIORS4.nii.gz 01-09-0364_labels.nii.gz -lstat > 01-09-0364_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/01-09-0364;sed -i "1,2d" 01-09-0364_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/01-09-0364;sed "s/\s\+/,/g" 01-09-0364_pre_ATROPOS_GMM_POSTERIORS4.txt > 01-09-0364_pre_ATROPOS_GMM_POSTERIORS4.csv cd $(WORKDIR)/01-09-0364;sed -i "s/^/01-09-0364_pre_ATROPOS_GMM_POSTERIORS4,/" 01-09-0364_pre_ATROPOS_GMM_POSTERIORS4.csv job_01-09-0364_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO: cd $(WORKDIR)/01-09-0364;c3d 01-09-0364_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.nii.gz 01-09-0364_labels.nii.gz -lstat > 01-09-0364_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/01-09-0364;sed -i "1,2d" 01-09-0364_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/01-09-0364;sed "s/\s\+/,/g" 01-09-0364_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt > 01-09-0364_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv cd $(WORKDIR)/01-09-0364;sed -i "s/^/01-09-0364_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO,/" 01-09-0364_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv job_01-09-0364_wCSV_pre_ENTROPY_RADIUS_1: cd $(WORKDIR)/01-09-0364;c3d 01-09-0364_pre_ENTROPY_RADIUS_1.nii.gz 01-09-0364_labels.nii.gz -lstat > 01-09-0364_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/01-09-0364;sed -i "1,2d" 01-09-0364_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/01-09-0364;sed "s/\s\+/,/g" 01-09-0364_pre_ENTROPY_RADIUS_1.txt > 01-09-0364_pre_ENTROPY_RADIUS_1.csv cd $(WORKDIR)/01-09-0364;sed -i "s/^/01-09-0364_pre_ENTROPY_RADIUS_1,/" 01-09-0364_pre_ENTROPY_RADIUS_1.csv job_01-09-0364_wCSV_pre_ENTROPY_RADIUS_3: cd $(WORKDIR)/01-09-0364;c3d 01-09-0364_pre_ENTROPY_RADIUS_3.nii.gz 01-09-0364_labels.nii.gz -lstat > 01-09-0364_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/01-09-0364;sed -i "1,2d" 01-09-0364_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/01-09-0364;sed "s/\s\+/,/g" 01-09-0364_pre_ENTROPY_RADIUS_3.txt > 01-09-0364_pre_ENTROPY_RADIUS_3.csv cd $(WORKDIR)/01-09-0364;sed -i "s/^/01-09-0364_pre_ENTROPY_RADIUS_3,/" 01-09-0364_pre_ENTROPY_RADIUS_3.csv job_01-09-0364_wCSV_pre_MEAN_RADIUS_1: cd $(WORKDIR)/01-09-0364;c3d 01-09-0364_pre_MEAN_RADIUS_1.nii.gz 01-09-0364_labels.nii.gz -lstat > 01-09-0364_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/01-09-0364;sed -i "1,2d" 01-09-0364_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/01-09-0364;sed "s/\s\+/,/g" 01-09-0364_pre_MEAN_RADIUS_1.txt > 01-09-0364_pre_MEAN_RADIUS_1.csv cd $(WORKDIR)/01-09-0364;sed -i "s/^/01-09-0364_pre_MEAN_RADIUS_1,/" 01-09-0364_pre_MEAN_RADIUS_1.csv job_01-09-0364_wCSV_pre_MEAN_RADIUS_3: cd $(WORKDIR)/01-09-0364;c3d 01-09-0364_pre_MEAN_RADIUS_3.nii.gz 01-09-0364_labels.nii.gz -lstat > 01-09-0364_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/01-09-0364;sed -i "1,2d" 01-09-0364_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/01-09-0364;sed "s/\s\+/,/g" 01-09-0364_pre_MEAN_RADIUS_3.txt > 01-09-0364_pre_MEAN_RADIUS_3.csv cd $(WORKDIR)/01-09-0364;sed -i "s/^/01-09-0364_pre_MEAN_RADIUS_3,/" 01-09-0364_pre_MEAN_RADIUS_3.csv job_01-09-0364_wCSV_pre_NORMALIZED: cd $(WORKDIR)/01-09-0364;c3d 01-09-0364_pre_NORMALIZED.nii.gz 01-09-0364_labels.nii.gz -lstat > 01-09-0364_pre_NORMALIZED.txt cd $(WORKDIR)/01-09-0364;sed -i "1,2d" 01-09-0364_pre_NORMALIZED.txt cd $(WORKDIR)/01-09-0364;sed "s/\s\+/,/g" 01-09-0364_pre_NORMALIZED.txt > 01-09-0364_pre_NORMALIZED.csv cd $(WORKDIR)/01-09-0364;sed -i "s/^/01-09-0364_pre_NORMALIZED,/" 01-09-0364_pre_NORMALIZED.csv job_01-09-0364_wCSV_pre_SIGMA_RADIUS_1: cd $(WORKDIR)/01-09-0364;c3d 01-09-0364_pre_SIGMA_RADIUS_1.nii.gz 01-09-0364_labels.nii.gz -lstat > 01-09-0364_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/01-09-0364;sed -i "1,2d" 01-09-0364_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/01-09-0364;sed "s/\s\+/,/g" 01-09-0364_pre_SIGMA_RADIUS_1.txt > 01-09-0364_pre_SIGMA_RADIUS_1.csv cd $(WORKDIR)/01-09-0364;sed -i "s/^/01-09-0364_pre_SIGMA_RADIUS_1,/" 01-09-0364_pre_SIGMA_RADIUS_1.csv job_01-09-0364_wCSV_pre_SIGMA_RADIUS_3: cd $(WORKDIR)/01-09-0364;c3d 01-09-0364_pre_SIGMA_RADIUS_3.nii.gz 01-09-0364_labels.nii.gz -lstat > 01-09-0364_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/01-09-0364;sed -i "1,2d" 01-09-0364_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/01-09-0364;sed "s/\s\+/,/g" 01-09-0364_pre_SIGMA_RADIUS_3.txt > 01-09-0364_pre_SIGMA_RADIUS_3.csv cd $(WORKDIR)/01-09-0364;sed -i "s/^/01-09-0364_pre_SIGMA_RADIUS_3,/" 01-09-0364_pre_SIGMA_RADIUS_3.csv job_01-09-0364_wCSV_pre_SKEWNESS_RADIUS_1: cd $(WORKDIR)/01-09-0364;c3d 01-09-0364_pre_SKEWNESS_RADIUS_1.nii.gz 01-09-0364_labels.nii.gz -lstat > 01-09-0364_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/01-09-0364;sed -i "1,2d" 01-09-0364_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/01-09-0364;sed "s/\s\+/,/g" 01-09-0364_pre_SKEWNESS_RADIUS_1.txt > 01-09-0364_pre_SKEWNESS_RADIUS_1.csv cd $(WORKDIR)/01-09-0364;sed -i "s/^/01-09-0364_pre_SKEWNESS_RADIUS_1,/" 01-09-0364_pre_SKEWNESS_RADIUS_1.csv job_01-09-0364_wCSV_pre_SKEWNESS_RADIUS_3: cd $(WORKDIR)/01-09-0364;c3d 01-09-0364_pre_SKEWNESS_RADIUS_3.nii.gz 01-09-0364_labels.nii.gz -lstat > 01-09-0364_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/01-09-0364;sed -i "1,2d" 01-09-0364_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/01-09-0364;sed "s/\s\+/,/g" 01-09-0364_pre_SKEWNESS_RADIUS_3.txt > 01-09-0364_pre_SKEWNESS_RADIUS_3.csv cd $(WORKDIR)/01-09-0364;sed -i "s/^/01-09-0364_pre_SKEWNESS_RADIUS_3,/" 01-09-0364_pre_SKEWNESS_RADIUS_3.csv job_01-09-0364_wCSV_pre__DIFFERENCE: cd $(WORKDIR)/01-09-0364;c3d 01-09-0364_pre__DIFFERENCE.nii.gz 01-09-0364_labels.nii.gz -lstat > 01-09-0364_pre__DIFFERENCE.txt cd $(WORKDIR)/01-09-0364;sed -i "1,2d" 01-09-0364_pre__DIFFERENCE.txt cd $(WORKDIR)/01-09-0364;sed "s/\s\+/,/g" 01-09-0364_pre__DIFFERENCE.txt > 01-09-0364_pre__DIFFERENCE.csv cd $(WORKDIR)/01-09-0364;sed -i "s/^/01-09-0364_pre__DIFFERENCE,/" 01-09-0364_pre__DIFFERENCE.csv job_02-09-0367_crFI: cd $(WORKDIR)/02-09-0367;c3d 02-09-0367_grey.nii.gz 02-09-0367_labels.nii.gz -copy-transform -o 02-09-0367_labels.nii.gz cd $(WORKDIR)/02-09-0367;c3d 02-09-0367_grey.nii.gz -orient RAI -o 02-09-0367_grey.nii.gz cd $(WORKDIR)/02-09-0367;c3d 02-09-0367_labels.nii.gz -orient RAI -o 02-09-0367_labels.nii.gz cd $(WORKDIR)/02-09-0367;c3d 02-09-0367_labels.nii.gz -binarize -o 02-09-0367_mask.nii.gz cd $(WORKDIR)/02-09-0367;../createFeatureImagesOvary.sh -d 3 -x 02-09-0367_mask.nii.gz -l3 -n pre -a 02-09-0367_grey.nii.gz -f 0x2 -o ./02-09-0367_ -r 1 -r 3 -s 2 -b 4 job_02-09-0367_wCSV_NORMALIZED_DISTANCE: cd $(WORKDIR)/02-09-0367;c3d 02-09-0367_NORMALIZED_DISTANCE.nii.gz 02-09-0367_labels.nii.gz -lstat > 02-09-0367_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/02-09-0367;sed -i "1,2d" 02-09-0367_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/02-09-0367;sed "s/\s\+/,/g" 02-09-0367_NORMALIZED_DISTANCE.txt > 02-09-0367_NORMALIZED_DISTANCE.csv cd $(WORKDIR)/02-09-0367;sed -i "s/^/02-09-0367_NORMALIZED_DISTANCE,/" 02-09-0367_NORMALIZED_DISTANCE.csv job_02-09-0367_wCSV_pre_ATROPOS_GMM: cd $(WORKDIR)/02-09-0367;c3d 02-09-0367_pre_ATROPOS_GMM.nii.gz 02-09-0367_labels.nii.gz -lstat > 02-09-0367_pre_ATROPOS_GMM.txt cd $(WORKDIR)/02-09-0367;sed -i "1,2d" 02-09-0367_pre_ATROPOS_GMM.txt cd $(WORKDIR)/02-09-0367;sed "s/\s\+/,/g" 02-09-0367_pre_ATROPOS_GMM.txt > 02-09-0367_pre_ATROPOS_GMM.csv cd $(WORKDIR)/02-09-0367;sed -i "s/^/02-09-0367_pre_ATROPOS_GMM,/" 02-09-0367_pre_ATROPOS_GMM.csv job_02-09-0367_wCSV_pre_ATROPOS_GMM_ECCENTRICITY: cd $(WORKDIR)/02-09-0367;c3d 02-09-0367_pre_ATROPOS_GMM_ECCENTRICITY.nii.gz 02-09-0367_labels.nii.gz -lstat > 02-09-0367_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/02-09-0367;sed -i "1,2d" 02-09-0367_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/02-09-0367;sed "s/\s\+/,/g" 02-09-0367_pre_ATROPOS_GMM_ECCENTRICITY.txt > 02-09-0367_pre_ATROPOS_GMM_ECCENTRICITY.csv cd $(WORKDIR)/02-09-0367;sed -i "s/^/02-09-0367_pre_ATROPOS_GMM_ECCENTRICITY,/" 02-09-0367_pre_ATROPOS_GMM_ECCENTRICITY.csv job_02-09-0367_wCSV_pre_ATROPOS_GMM_ELONGATION: cd $(WORKDIR)/02-09-0367;c3d 02-09-0367_pre_ATROPOS_GMM_ELONGATION.nii.gz 02-09-0367_labels.nii.gz -lstat > 02-09-0367_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/02-09-0367;sed -i "1,2d" 02-09-0367_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/02-09-0367;sed "s/\s\+/,/g" 02-09-0367_pre_ATROPOS_GMM_ELONGATION.txt > 02-09-0367_pre_ATROPOS_GMM_ELONGATION.csv cd $(WORKDIR)/02-09-0367;sed -i "s/^/02-09-0367_pre_ATROPOS_GMM_ELONGATION,/" 02-09-0367_pre_ATROPOS_GMM_ELONGATION.csv job_02-09-0367_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE: cd $(WORKDIR)/02-09-0367;c3d 02-09-0367_pre_ATROPOS_GMM_LABEL3_DISTANCE.nii.gz 02-09-0367_labels.nii.gz -lstat > 02-09-0367_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/02-09-0367;sed -i "1,2d" 02-09-0367_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/02-09-0367;sed "s/\s\+/,/g" 02-09-0367_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt > 02-09-0367_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv cd $(WORKDIR)/02-09-0367;sed -i "s/^/02-09-0367_pre_ATROPOS_GMM_LABEL3_DISTANCE,/" 02-09-0367_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv job_02-09-0367_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME: cd $(WORKDIR)/02-09-0367;c3d 02-09-0367_pre_ATROPOS_GMM_PHYSICAL_VOLUME.nii.gz 02-09-0367_labels.nii.gz -lstat > 02-09-0367_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/02-09-0367;sed -i "1,2d" 02-09-0367_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/02-09-0367;sed "s/\s\+/,/g" 02-09-0367_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt > 02-09-0367_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv cd $(WORKDIR)/02-09-0367;sed -i "s/^/02-09-0367_pre_ATROPOS_GMM_PHYSICAL_VOLUME,/" 02-09-0367_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv job_02-09-0367_wCSV_pre_ATROPOS_GMM_POSTERIORS1: cd $(WORKDIR)/02-09-0367;c3d 02-09-0367_pre_ATROPOS_GMM_POSTERIORS1.nii.gz 02-09-0367_labels.nii.gz -lstat > 02-09-0367_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/02-09-0367;sed -i "1,2d" 02-09-0367_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/02-09-0367;sed "s/\s\+/,/g" 02-09-0367_pre_ATROPOS_GMM_POSTERIORS1.txt > 02-09-0367_pre_ATROPOS_GMM_POSTERIORS1.csv cd $(WORKDIR)/02-09-0367;sed -i "s/^/02-09-0367_pre_ATROPOS_GMM_POSTERIORS1,/" 02-09-0367_pre_ATROPOS_GMM_POSTERIORS1.csv job_02-09-0367_wCSV_pre_ATROPOS_GMM_POSTERIORS2: cd $(WORKDIR)/02-09-0367;c3d 02-09-0367_pre_ATROPOS_GMM_POSTERIORS2.nii.gz 02-09-0367_labels.nii.gz -lstat > 02-09-0367_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/02-09-0367;sed -i "1,2d" 02-09-0367_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/02-09-0367;sed "s/\s\+/,/g" 02-09-0367_pre_ATROPOS_GMM_POSTERIORS2.txt > 02-09-0367_pre_ATROPOS_GMM_POSTERIORS2.csv cd $(WORKDIR)/02-09-0367;sed -i "s/^/02-09-0367_pre_ATROPOS_GMM_POSTERIORS2,/" 02-09-0367_pre_ATROPOS_GMM_POSTERIORS2.csv job_02-09-0367_wCSV_pre_ATROPOS_GMM_POSTERIORS3: cd $(WORKDIR)/02-09-0367;c3d 02-09-0367_pre_ATROPOS_GMM_POSTERIORS3.nii.gz 02-09-0367_labels.nii.gz -lstat > 02-09-0367_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/02-09-0367;sed -i "1,2d" 02-09-0367_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/02-09-0367;sed "s/\s\+/,/g" 02-09-0367_pre_ATROPOS_GMM_POSTERIORS3.txt > 02-09-0367_pre_ATROPOS_GMM_POSTERIORS3.csv cd $(WORKDIR)/02-09-0367;sed -i "s/^/02-09-0367_pre_ATROPOS_GMM_POSTERIORS3,/" 02-09-0367_pre_ATROPOS_GMM_POSTERIORS3.csv job_02-09-0367_wCSV_pre_ATROPOS_GMM_POSTERIORS4: cd $(WORKDIR)/02-09-0367;c3d 02-09-0367_pre_ATROPOS_GMM_POSTERIORS4.nii.gz 02-09-0367_labels.nii.gz -lstat > 02-09-0367_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/02-09-0367;sed -i "1,2d" 02-09-0367_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/02-09-0367;sed "s/\s\+/,/g" 02-09-0367_pre_ATROPOS_GMM_POSTERIORS4.txt > 02-09-0367_pre_ATROPOS_GMM_POSTERIORS4.csv cd $(WORKDIR)/02-09-0367;sed -i "s/^/02-09-0367_pre_ATROPOS_GMM_POSTERIORS4,/" 02-09-0367_pre_ATROPOS_GMM_POSTERIORS4.csv job_02-09-0367_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO: cd $(WORKDIR)/02-09-0367;c3d 02-09-0367_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.nii.gz 02-09-0367_labels.nii.gz -lstat > 02-09-0367_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/02-09-0367;sed -i "1,2d" 02-09-0367_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/02-09-0367;sed "s/\s\+/,/g" 02-09-0367_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt > 02-09-0367_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv cd $(WORKDIR)/02-09-0367;sed -i "s/^/02-09-0367_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO,/" 02-09-0367_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv job_02-09-0367_wCSV_pre_ENTROPY_RADIUS_1: cd $(WORKDIR)/02-09-0367;c3d 02-09-0367_pre_ENTROPY_RADIUS_1.nii.gz 02-09-0367_labels.nii.gz -lstat > 02-09-0367_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/02-09-0367;sed -i "1,2d" 02-09-0367_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/02-09-0367;sed "s/\s\+/,/g" 02-09-0367_pre_ENTROPY_RADIUS_1.txt > 02-09-0367_pre_ENTROPY_RADIUS_1.csv cd $(WORKDIR)/02-09-0367;sed -i "s/^/02-09-0367_pre_ENTROPY_RADIUS_1,/" 02-09-0367_pre_ENTROPY_RADIUS_1.csv job_02-09-0367_wCSV_pre_ENTROPY_RADIUS_3: cd $(WORKDIR)/02-09-0367;c3d 02-09-0367_pre_ENTROPY_RADIUS_3.nii.gz 02-09-0367_labels.nii.gz -lstat > 02-09-0367_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/02-09-0367;sed -i "1,2d" 02-09-0367_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/02-09-0367;sed "s/\s\+/,/g" 02-09-0367_pre_ENTROPY_RADIUS_3.txt > 02-09-0367_pre_ENTROPY_RADIUS_3.csv cd $(WORKDIR)/02-09-0367;sed -i "s/^/02-09-0367_pre_ENTROPY_RADIUS_3,/" 02-09-0367_pre_ENTROPY_RADIUS_3.csv job_02-09-0367_wCSV_pre_MEAN_RADIUS_1: cd $(WORKDIR)/02-09-0367;c3d 02-09-0367_pre_MEAN_RADIUS_1.nii.gz 02-09-0367_labels.nii.gz -lstat > 02-09-0367_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/02-09-0367;sed -i "1,2d" 02-09-0367_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/02-09-0367;sed "s/\s\+/,/g" 02-09-0367_pre_MEAN_RADIUS_1.txt > 02-09-0367_pre_MEAN_RADIUS_1.csv cd $(WORKDIR)/02-09-0367;sed -i "s/^/02-09-0367_pre_MEAN_RADIUS_1,/" 02-09-0367_pre_MEAN_RADIUS_1.csv job_02-09-0367_wCSV_pre_MEAN_RADIUS_3: cd $(WORKDIR)/02-09-0367;c3d 02-09-0367_pre_MEAN_RADIUS_3.nii.gz 02-09-0367_labels.nii.gz -lstat > 02-09-0367_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/02-09-0367;sed -i "1,2d" 02-09-0367_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/02-09-0367;sed "s/\s\+/,/g" 02-09-0367_pre_MEAN_RADIUS_3.txt > 02-09-0367_pre_MEAN_RADIUS_3.csv cd $(WORKDIR)/02-09-0367;sed -i "s/^/02-09-0367_pre_MEAN_RADIUS_3,/" 02-09-0367_pre_MEAN_RADIUS_3.csv job_02-09-0367_wCSV_pre_NORMALIZED: cd $(WORKDIR)/02-09-0367;c3d 02-09-0367_pre_NORMALIZED.nii.gz 02-09-0367_labels.nii.gz -lstat > 02-09-0367_pre_NORMALIZED.txt cd $(WORKDIR)/02-09-0367;sed -i "1,2d" 02-09-0367_pre_NORMALIZED.txt cd $(WORKDIR)/02-09-0367;sed "s/\s\+/,/g" 02-09-0367_pre_NORMALIZED.txt > 02-09-0367_pre_NORMALIZED.csv cd $(WORKDIR)/02-09-0367;sed -i "s/^/02-09-0367_pre_NORMALIZED,/" 02-09-0367_pre_NORMALIZED.csv job_02-09-0367_wCSV_pre_SIGMA_RADIUS_1: cd $(WORKDIR)/02-09-0367;c3d 02-09-0367_pre_SIGMA_RADIUS_1.nii.gz 02-09-0367_labels.nii.gz -lstat > 02-09-0367_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/02-09-0367;sed -i "1,2d" 02-09-0367_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/02-09-0367;sed "s/\s\+/,/g" 02-09-0367_pre_SIGMA_RADIUS_1.txt > 02-09-0367_pre_SIGMA_RADIUS_1.csv cd $(WORKDIR)/02-09-0367;sed -i "s/^/02-09-0367_pre_SIGMA_RADIUS_1,/" 02-09-0367_pre_SIGMA_RADIUS_1.csv job_02-09-0367_wCSV_pre_SIGMA_RADIUS_3: cd $(WORKDIR)/02-09-0367;c3d 02-09-0367_pre_SIGMA_RADIUS_3.nii.gz 02-09-0367_labels.nii.gz -lstat > 02-09-0367_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/02-09-0367;sed -i "1,2d" 02-09-0367_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/02-09-0367;sed "s/\s\+/,/g" 02-09-0367_pre_SIGMA_RADIUS_3.txt > 02-09-0367_pre_SIGMA_RADIUS_3.csv cd $(WORKDIR)/02-09-0367;sed -i "s/^/02-09-0367_pre_SIGMA_RADIUS_3,/" 02-09-0367_pre_SIGMA_RADIUS_3.csv job_02-09-0367_wCSV_pre_SKEWNESS_RADIUS_1: cd $(WORKDIR)/02-09-0367;c3d 02-09-0367_pre_SKEWNESS_RADIUS_1.nii.gz 02-09-0367_labels.nii.gz -lstat > 02-09-0367_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/02-09-0367;sed -i "1,2d" 02-09-0367_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/02-09-0367;sed "s/\s\+/,/g" 02-09-0367_pre_SKEWNESS_RADIUS_1.txt > 02-09-0367_pre_SKEWNESS_RADIUS_1.csv cd $(WORKDIR)/02-09-0367;sed -i "s/^/02-09-0367_pre_SKEWNESS_RADIUS_1,/" 02-09-0367_pre_SKEWNESS_RADIUS_1.csv job_02-09-0367_wCSV_pre_SKEWNESS_RADIUS_3: cd $(WORKDIR)/02-09-0367;c3d 02-09-0367_pre_SKEWNESS_RADIUS_3.nii.gz 02-09-0367_labels.nii.gz -lstat > 02-09-0367_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/02-09-0367;sed -i "1,2d" 02-09-0367_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/02-09-0367;sed "s/\s\+/,/g" 02-09-0367_pre_SKEWNESS_RADIUS_3.txt > 02-09-0367_pre_SKEWNESS_RADIUS_3.csv cd $(WORKDIR)/02-09-0367;sed -i "s/^/02-09-0367_pre_SKEWNESS_RADIUS_3,/" 02-09-0367_pre_SKEWNESS_RADIUS_3.csv job_02-09-0367_wCSV_pre__DIFFERENCE: cd $(WORKDIR)/02-09-0367;c3d 02-09-0367_pre__DIFFERENCE.nii.gz 02-09-0367_labels.nii.gz -lstat > 02-09-0367_pre__DIFFERENCE.txt cd $(WORKDIR)/02-09-0367;sed -i "1,2d" 02-09-0367_pre__DIFFERENCE.txt cd $(WORKDIR)/02-09-0367;sed "s/\s\+/,/g" 02-09-0367_pre__DIFFERENCE.txt > 02-09-0367_pre__DIFFERENCE.csv cd $(WORKDIR)/02-09-0367;sed -i "s/^/02-09-0367_pre__DIFFERENCE,/" 02-09-0367_pre__DIFFERENCE.csv job_03-09-0369_crFI: cd $(WORKDIR)/03-09-0369;c3d 03-09-0369_grey.nii.gz 03-09-0369_labels.nii.gz -copy-transform -o 03-09-0369_labels.nii.gz cd $(WORKDIR)/03-09-0369;c3d 03-09-0369_grey.nii.gz -orient RAI -o 03-09-0369_grey.nii.gz cd $(WORKDIR)/03-09-0369;c3d 03-09-0369_labels.nii.gz -orient RAI -o 03-09-0369_labels.nii.gz cd $(WORKDIR)/03-09-0369;c3d 03-09-0369_labels.nii.gz -binarize -o 03-09-0369_mask.nii.gz cd $(WORKDIR)/03-09-0369;../createFeatureImagesOvary.sh -d 3 -x 03-09-0369_mask.nii.gz -l3 -n pre -a 03-09-0369_grey.nii.gz -f 0x2 -o ./03-09-0369_ -r 1 -r 3 -s 2 -b 4 job_03-09-0369_wCSV_NORMALIZED_DISTANCE: cd $(WORKDIR)/03-09-0369;c3d 03-09-0369_NORMALIZED_DISTANCE.nii.gz 03-09-0369_labels.nii.gz -lstat > 03-09-0369_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/03-09-0369;sed -i "1,2d" 03-09-0369_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/03-09-0369;sed "s/\s\+/,/g" 03-09-0369_NORMALIZED_DISTANCE.txt > 03-09-0369_NORMALIZED_DISTANCE.csv cd $(WORKDIR)/03-09-0369;sed -i "s/^/03-09-0369_NORMALIZED_DISTANCE,/" 03-09-0369_NORMALIZED_DISTANCE.csv job_03-09-0369_wCSV_pre_ATROPOS_GMM: cd $(WORKDIR)/03-09-0369;c3d 03-09-0369_pre_ATROPOS_GMM.nii.gz 03-09-0369_labels.nii.gz -lstat > 03-09-0369_pre_ATROPOS_GMM.txt cd $(WORKDIR)/03-09-0369;sed -i "1,2d" 03-09-0369_pre_ATROPOS_GMM.txt cd $(WORKDIR)/03-09-0369;sed "s/\s\+/,/g" 03-09-0369_pre_ATROPOS_GMM.txt > 03-09-0369_pre_ATROPOS_GMM.csv cd $(WORKDIR)/03-09-0369;sed -i "s/^/03-09-0369_pre_ATROPOS_GMM,/" 03-09-0369_pre_ATROPOS_GMM.csv job_03-09-0369_wCSV_pre_ATROPOS_GMM_ECCENTRICITY: cd $(WORKDIR)/03-09-0369;c3d 03-09-0369_pre_ATROPOS_GMM_ECCENTRICITY.nii.gz 03-09-0369_labels.nii.gz -lstat > 03-09-0369_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/03-09-0369;sed -i "1,2d" 03-09-0369_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/03-09-0369;sed "s/\s\+/,/g" 03-09-0369_pre_ATROPOS_GMM_ECCENTRICITY.txt > 03-09-0369_pre_ATROPOS_GMM_ECCENTRICITY.csv cd $(WORKDIR)/03-09-0369;sed -i "s/^/03-09-0369_pre_ATROPOS_GMM_ECCENTRICITY,/" 03-09-0369_pre_ATROPOS_GMM_ECCENTRICITY.csv job_03-09-0369_wCSV_pre_ATROPOS_GMM_ELONGATION: cd $(WORKDIR)/03-09-0369;c3d 03-09-0369_pre_ATROPOS_GMM_ELONGATION.nii.gz 03-09-0369_labels.nii.gz -lstat > 03-09-0369_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/03-09-0369;sed -i "1,2d" 03-09-0369_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/03-09-0369;sed "s/\s\+/,/g" 03-09-0369_pre_ATROPOS_GMM_ELONGATION.txt > 03-09-0369_pre_ATROPOS_GMM_ELONGATION.csv cd $(WORKDIR)/03-09-0369;sed -i "s/^/03-09-0369_pre_ATROPOS_GMM_ELONGATION,/" 03-09-0369_pre_ATROPOS_GMM_ELONGATION.csv job_03-09-0369_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE: cd $(WORKDIR)/03-09-0369;c3d 03-09-0369_pre_ATROPOS_GMM_LABEL3_DISTANCE.nii.gz 03-09-0369_labels.nii.gz -lstat > 03-09-0369_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/03-09-0369;sed -i "1,2d" 03-09-0369_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/03-09-0369;sed "s/\s\+/,/g" 03-09-0369_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt > 03-09-0369_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv cd $(WORKDIR)/03-09-0369;sed -i "s/^/03-09-0369_pre_ATROPOS_GMM_LABEL3_DISTANCE,/" 03-09-0369_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv job_03-09-0369_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME: cd $(WORKDIR)/03-09-0369;c3d 03-09-0369_pre_ATROPOS_GMM_PHYSICAL_VOLUME.nii.gz 03-09-0369_labels.nii.gz -lstat > 03-09-0369_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/03-09-0369;sed -i "1,2d" 03-09-0369_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/03-09-0369;sed "s/\s\+/,/g" 03-09-0369_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt > 03-09-0369_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv cd $(WORKDIR)/03-09-0369;sed -i "s/^/03-09-0369_pre_ATROPOS_GMM_PHYSICAL_VOLUME,/" 03-09-0369_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv job_03-09-0369_wCSV_pre_ATROPOS_GMM_POSTERIORS1: cd $(WORKDIR)/03-09-0369;c3d 03-09-0369_pre_ATROPOS_GMM_POSTERIORS1.nii.gz 03-09-0369_labels.nii.gz -lstat > 03-09-0369_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/03-09-0369;sed -i "1,2d" 03-09-0369_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/03-09-0369;sed "s/\s\+/,/g" 03-09-0369_pre_ATROPOS_GMM_POSTERIORS1.txt > 03-09-0369_pre_ATROPOS_GMM_POSTERIORS1.csv cd $(WORKDIR)/03-09-0369;sed -i "s/^/03-09-0369_pre_ATROPOS_GMM_POSTERIORS1,/" 03-09-0369_pre_ATROPOS_GMM_POSTERIORS1.csv job_03-09-0369_wCSV_pre_ATROPOS_GMM_POSTERIORS2: cd $(WORKDIR)/03-09-0369;c3d 03-09-0369_pre_ATROPOS_GMM_POSTERIORS2.nii.gz 03-09-0369_labels.nii.gz -lstat > 03-09-0369_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/03-09-0369;sed -i "1,2d" 03-09-0369_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/03-09-0369;sed "s/\s\+/,/g" 03-09-0369_pre_ATROPOS_GMM_POSTERIORS2.txt > 03-09-0369_pre_ATROPOS_GMM_POSTERIORS2.csv cd $(WORKDIR)/03-09-0369;sed -i "s/^/03-09-0369_pre_ATROPOS_GMM_POSTERIORS2,/" 03-09-0369_pre_ATROPOS_GMM_POSTERIORS2.csv job_03-09-0369_wCSV_pre_ATROPOS_GMM_POSTERIORS3: cd $(WORKDIR)/03-09-0369;c3d 03-09-0369_pre_ATROPOS_GMM_POSTERIORS3.nii.gz 03-09-0369_labels.nii.gz -lstat > 03-09-0369_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/03-09-0369;sed -i "1,2d" 03-09-0369_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/03-09-0369;sed "s/\s\+/,/g" 03-09-0369_pre_ATROPOS_GMM_POSTERIORS3.txt > 03-09-0369_pre_ATROPOS_GMM_POSTERIORS3.csv cd $(WORKDIR)/03-09-0369;sed -i "s/^/03-09-0369_pre_ATROPOS_GMM_POSTERIORS3,/" 03-09-0369_pre_ATROPOS_GMM_POSTERIORS3.csv job_03-09-0369_wCSV_pre_ATROPOS_GMM_POSTERIORS4: cd $(WORKDIR)/03-09-0369;c3d 03-09-0369_pre_ATROPOS_GMM_POSTERIORS4.nii.gz 03-09-0369_labels.nii.gz -lstat > 03-09-0369_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/03-09-0369;sed -i "1,2d" 03-09-0369_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/03-09-0369;sed "s/\s\+/,/g" 03-09-0369_pre_ATROPOS_GMM_POSTERIORS4.txt > 03-09-0369_pre_ATROPOS_GMM_POSTERIORS4.csv cd $(WORKDIR)/03-09-0369;sed -i "s/^/03-09-0369_pre_ATROPOS_GMM_POSTERIORS4,/" 03-09-0369_pre_ATROPOS_GMM_POSTERIORS4.csv job_03-09-0369_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO: cd $(WORKDIR)/03-09-0369;c3d 03-09-0369_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.nii.gz 03-09-0369_labels.nii.gz -lstat > 03-09-0369_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/03-09-0369;sed -i "1,2d" 03-09-0369_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/03-09-0369;sed "s/\s\+/,/g" 03-09-0369_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt > 03-09-0369_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv cd $(WORKDIR)/03-09-0369;sed -i "s/^/03-09-0369_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO,/" 03-09-0369_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv job_03-09-0369_wCSV_pre_ENTROPY_RADIUS_1: cd $(WORKDIR)/03-09-0369;c3d 03-09-0369_pre_ENTROPY_RADIUS_1.nii.gz 03-09-0369_labels.nii.gz -lstat > 03-09-0369_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/03-09-0369;sed -i "1,2d" 03-09-0369_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/03-09-0369;sed "s/\s\+/,/g" 03-09-0369_pre_ENTROPY_RADIUS_1.txt > 03-09-0369_pre_ENTROPY_RADIUS_1.csv cd $(WORKDIR)/03-09-0369;sed -i "s/^/03-09-0369_pre_ENTROPY_RADIUS_1,/" 03-09-0369_pre_ENTROPY_RADIUS_1.csv job_03-09-0369_wCSV_pre_ENTROPY_RADIUS_3: cd $(WORKDIR)/03-09-0369;c3d 03-09-0369_pre_ENTROPY_RADIUS_3.nii.gz 03-09-0369_labels.nii.gz -lstat > 03-09-0369_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/03-09-0369;sed -i "1,2d" 03-09-0369_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/03-09-0369;sed "s/\s\+/,/g" 03-09-0369_pre_ENTROPY_RADIUS_3.txt > 03-09-0369_pre_ENTROPY_RADIUS_3.csv cd $(WORKDIR)/03-09-0369;sed -i "s/^/03-09-0369_pre_ENTROPY_RADIUS_3,/" 03-09-0369_pre_ENTROPY_RADIUS_3.csv job_03-09-0369_wCSV_pre_MEAN_RADIUS_1: cd $(WORKDIR)/03-09-0369;c3d 03-09-0369_pre_MEAN_RADIUS_1.nii.gz 03-09-0369_labels.nii.gz -lstat > 03-09-0369_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/03-09-0369;sed -i "1,2d" 03-09-0369_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/03-09-0369;sed "s/\s\+/,/g" 03-09-0369_pre_MEAN_RADIUS_1.txt > 03-09-0369_pre_MEAN_RADIUS_1.csv cd $(WORKDIR)/03-09-0369;sed -i "s/^/03-09-0369_pre_MEAN_RADIUS_1,/" 03-09-0369_pre_MEAN_RADIUS_1.csv job_03-09-0369_wCSV_pre_MEAN_RADIUS_3: cd $(WORKDIR)/03-09-0369;c3d 03-09-0369_pre_MEAN_RADIUS_3.nii.gz 03-09-0369_labels.nii.gz -lstat > 03-09-0369_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/03-09-0369;sed -i "1,2d" 03-09-0369_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/03-09-0369;sed "s/\s\+/,/g" 03-09-0369_pre_MEAN_RADIUS_3.txt > 03-09-0369_pre_MEAN_RADIUS_3.csv cd $(WORKDIR)/03-09-0369;sed -i "s/^/03-09-0369_pre_MEAN_RADIUS_3,/" 03-09-0369_pre_MEAN_RADIUS_3.csv job_03-09-0369_wCSV_pre_NORMALIZED: cd $(WORKDIR)/03-09-0369;c3d 03-09-0369_pre_NORMALIZED.nii.gz 03-09-0369_labels.nii.gz -lstat > 03-09-0369_pre_NORMALIZED.txt cd $(WORKDIR)/03-09-0369;sed -i "1,2d" 03-09-0369_pre_NORMALIZED.txt cd $(WORKDIR)/03-09-0369;sed "s/\s\+/,/g" 03-09-0369_pre_NORMALIZED.txt > 03-09-0369_pre_NORMALIZED.csv cd $(WORKDIR)/03-09-0369;sed -i "s/^/03-09-0369_pre_NORMALIZED,/" 03-09-0369_pre_NORMALIZED.csv job_03-09-0369_wCSV_pre_SIGMA_RADIUS_1: cd $(WORKDIR)/03-09-0369;c3d 03-09-0369_pre_SIGMA_RADIUS_1.nii.gz 03-09-0369_labels.nii.gz -lstat > 03-09-0369_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/03-09-0369;sed -i "1,2d" 03-09-0369_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/03-09-0369;sed "s/\s\+/,/g" 03-09-0369_pre_SIGMA_RADIUS_1.txt > 03-09-0369_pre_SIGMA_RADIUS_1.csv cd $(WORKDIR)/03-09-0369;sed -i "s/^/03-09-0369_pre_SIGMA_RADIUS_1,/" 03-09-0369_pre_SIGMA_RADIUS_1.csv job_03-09-0369_wCSV_pre_SIGMA_RADIUS_3: cd $(WORKDIR)/03-09-0369;c3d 03-09-0369_pre_SIGMA_RADIUS_3.nii.gz 03-09-0369_labels.nii.gz -lstat > 03-09-0369_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/03-09-0369;sed -i "1,2d" 03-09-0369_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/03-09-0369;sed "s/\s\+/,/g" 03-09-0369_pre_SIGMA_RADIUS_3.txt > 03-09-0369_pre_SIGMA_RADIUS_3.csv cd $(WORKDIR)/03-09-0369;sed -i "s/^/03-09-0369_pre_SIGMA_RADIUS_3,/" 03-09-0369_pre_SIGMA_RADIUS_3.csv job_03-09-0369_wCSV_pre_SKEWNESS_RADIUS_1: cd $(WORKDIR)/03-09-0369;c3d 03-09-0369_pre_SKEWNESS_RADIUS_1.nii.gz 03-09-0369_labels.nii.gz -lstat > 03-09-0369_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/03-09-0369;sed -i "1,2d" 03-09-0369_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/03-09-0369;sed "s/\s\+/,/g" 03-09-0369_pre_SKEWNESS_RADIUS_1.txt > 03-09-0369_pre_SKEWNESS_RADIUS_1.csv cd $(WORKDIR)/03-09-0369;sed -i "s/^/03-09-0369_pre_SKEWNESS_RADIUS_1,/" 03-09-0369_pre_SKEWNESS_RADIUS_1.csv job_03-09-0369_wCSV_pre_SKEWNESS_RADIUS_3: cd $(WORKDIR)/03-09-0369;c3d 03-09-0369_pre_SKEWNESS_RADIUS_3.nii.gz 03-09-0369_labels.nii.gz -lstat > 03-09-0369_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/03-09-0369;sed -i "1,2d" 03-09-0369_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/03-09-0369;sed "s/\s\+/,/g" 03-09-0369_pre_SKEWNESS_RADIUS_3.txt > 03-09-0369_pre_SKEWNESS_RADIUS_3.csv cd $(WORKDIR)/03-09-0369;sed -i "s/^/03-09-0369_pre_SKEWNESS_RADIUS_3,/" 03-09-0369_pre_SKEWNESS_RADIUS_3.csv job_03-09-0369_wCSV_pre__DIFFERENCE: cd $(WORKDIR)/03-09-0369;c3d 03-09-0369_pre__DIFFERENCE.nii.gz 03-09-0369_labels.nii.gz -lstat > 03-09-0369_pre__DIFFERENCE.txt cd $(WORKDIR)/03-09-0369;sed -i "1,2d" 03-09-0369_pre__DIFFERENCE.txt cd $(WORKDIR)/03-09-0369;sed "s/\s\+/,/g" 03-09-0369_pre__DIFFERENCE.txt > 03-09-0369_pre__DIFFERENCE.csv cd $(WORKDIR)/03-09-0369;sed -i "s/^/03-09-0369_pre__DIFFERENCE,/" 03-09-0369_pre__DIFFERENCE.csv job_04-09-1659_crFI: cd $(WORKDIR)/04-09-1659;c3d 04-09-1659_grey.nii.gz 04-09-1659_labels.nii.gz -copy-transform -o 04-09-1659_labels.nii.gz cd $(WORKDIR)/04-09-1659;c3d 04-09-1659_grey.nii.gz -orient RAI -o 04-09-1659_grey.nii.gz cd $(WORKDIR)/04-09-1659;c3d 04-09-1659_labels.nii.gz -orient RAI -o 04-09-1659_labels.nii.gz cd $(WORKDIR)/04-09-1659;c3d 04-09-1659_labels.nii.gz -binarize -o 04-09-1659_mask.nii.gz cd $(WORKDIR)/04-09-1659;../createFeatureImagesOvary.sh -d 3 -x 04-09-1659_mask.nii.gz -l3 -n pre -a 04-09-1659_grey.nii.gz -f 0x2 -o ./04-09-1659_ -r 1 -r 3 -s 2 -b 4 job_04-09-1659_wCSV_NORMALIZED_DISTANCE: cd $(WORKDIR)/04-09-1659;c3d 04-09-1659_NORMALIZED_DISTANCE.nii.gz 04-09-1659_labels.nii.gz -lstat > 04-09-1659_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/04-09-1659;sed -i "1,2d" 04-09-1659_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/04-09-1659;sed "s/\s\+/,/g" 04-09-1659_NORMALIZED_DISTANCE.txt > 04-09-1659_NORMALIZED_DISTANCE.csv cd $(WORKDIR)/04-09-1659;sed -i "s/^/04-09-1659_NORMALIZED_DISTANCE,/" 04-09-1659_NORMALIZED_DISTANCE.csv job_04-09-1659_wCSV_pre_ATROPOS_GMM: cd $(WORKDIR)/04-09-1659;c3d 04-09-1659_pre_ATROPOS_GMM.nii.gz 04-09-1659_labels.nii.gz -lstat > 04-09-1659_pre_ATROPOS_GMM.txt cd $(WORKDIR)/04-09-1659;sed -i "1,2d" 04-09-1659_pre_ATROPOS_GMM.txt cd $(WORKDIR)/04-09-1659;sed "s/\s\+/,/g" 04-09-1659_pre_ATROPOS_GMM.txt > 04-09-1659_pre_ATROPOS_GMM.csv cd $(WORKDIR)/04-09-1659;sed -i "s/^/04-09-1659_pre_ATROPOS_GMM,/" 04-09-1659_pre_ATROPOS_GMM.csv job_04-09-1659_wCSV_pre_ATROPOS_GMM_ECCENTRICITY: cd $(WORKDIR)/04-09-1659;c3d 04-09-1659_pre_ATROPOS_GMM_ECCENTRICITY.nii.gz 04-09-1659_labels.nii.gz -lstat > 04-09-1659_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/04-09-1659;sed -i "1,2d" 04-09-1659_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/04-09-1659;sed "s/\s\+/,/g" 04-09-1659_pre_ATROPOS_GMM_ECCENTRICITY.txt > 04-09-1659_pre_ATROPOS_GMM_ECCENTRICITY.csv cd $(WORKDIR)/04-09-1659;sed -i "s/^/04-09-1659_pre_ATROPOS_GMM_ECCENTRICITY,/" 04-09-1659_pre_ATROPOS_GMM_ECCENTRICITY.csv job_04-09-1659_wCSV_pre_ATROPOS_GMM_ELONGATION: cd $(WORKDIR)/04-09-1659;c3d 04-09-1659_pre_ATROPOS_GMM_ELONGATION.nii.gz 04-09-1659_labels.nii.gz -lstat > 04-09-1659_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/04-09-1659;sed -i "1,2d" 04-09-1659_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/04-09-1659;sed "s/\s\+/,/g" 04-09-1659_pre_ATROPOS_GMM_ELONGATION.txt > 04-09-1659_pre_ATROPOS_GMM_ELONGATION.csv cd $(WORKDIR)/04-09-1659;sed -i "s/^/04-09-1659_pre_ATROPOS_GMM_ELONGATION,/" 04-09-1659_pre_ATROPOS_GMM_ELONGATION.csv job_04-09-1659_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE: cd $(WORKDIR)/04-09-1659;c3d 04-09-1659_pre_ATROPOS_GMM_LABEL3_DISTANCE.nii.gz 04-09-1659_labels.nii.gz -lstat > 04-09-1659_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/04-09-1659;sed -i "1,2d" 04-09-1659_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/04-09-1659;sed "s/\s\+/,/g" 04-09-1659_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt > 04-09-1659_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv cd $(WORKDIR)/04-09-1659;sed -i "s/^/04-09-1659_pre_ATROPOS_GMM_LABEL3_DISTANCE,/" 04-09-1659_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv job_04-09-1659_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME: cd $(WORKDIR)/04-09-1659;c3d 04-09-1659_pre_ATROPOS_GMM_PHYSICAL_VOLUME.nii.gz 04-09-1659_labels.nii.gz -lstat > 04-09-1659_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/04-09-1659;sed -i "1,2d" 04-09-1659_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/04-09-1659;sed "s/\s\+/,/g" 04-09-1659_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt > 04-09-1659_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv cd $(WORKDIR)/04-09-1659;sed -i "s/^/04-09-1659_pre_ATROPOS_GMM_PHYSICAL_VOLUME,/" 04-09-1659_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv job_04-09-1659_wCSV_pre_ATROPOS_GMM_POSTERIORS1: cd $(WORKDIR)/04-09-1659;c3d 04-09-1659_pre_ATROPOS_GMM_POSTERIORS1.nii.gz 04-09-1659_labels.nii.gz -lstat > 04-09-1659_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/04-09-1659;sed -i "1,2d" 04-09-1659_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/04-09-1659;sed "s/\s\+/,/g" 04-09-1659_pre_ATROPOS_GMM_POSTERIORS1.txt > 04-09-1659_pre_ATROPOS_GMM_POSTERIORS1.csv cd $(WORKDIR)/04-09-1659;sed -i "s/^/04-09-1659_pre_ATROPOS_GMM_POSTERIORS1,/" 04-09-1659_pre_ATROPOS_GMM_POSTERIORS1.csv job_04-09-1659_wCSV_pre_ATROPOS_GMM_POSTERIORS2: cd $(WORKDIR)/04-09-1659;c3d 04-09-1659_pre_ATROPOS_GMM_POSTERIORS2.nii.gz 04-09-1659_labels.nii.gz -lstat > 04-09-1659_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/04-09-1659;sed -i "1,2d" 04-09-1659_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/04-09-1659;sed "s/\s\+/,/g" 04-09-1659_pre_ATROPOS_GMM_POSTERIORS2.txt > 04-09-1659_pre_ATROPOS_GMM_POSTERIORS2.csv cd $(WORKDIR)/04-09-1659;sed -i "s/^/04-09-1659_pre_ATROPOS_GMM_POSTERIORS2,/" 04-09-1659_pre_ATROPOS_GMM_POSTERIORS2.csv job_04-09-1659_wCSV_pre_ATROPOS_GMM_POSTERIORS3: cd $(WORKDIR)/04-09-1659;c3d 04-09-1659_pre_ATROPOS_GMM_POSTERIORS3.nii.gz 04-09-1659_labels.nii.gz -lstat > 04-09-1659_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/04-09-1659;sed -i "1,2d" 04-09-1659_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/04-09-1659;sed "s/\s\+/,/g" 04-09-1659_pre_ATROPOS_GMM_POSTERIORS3.txt > 04-09-1659_pre_ATROPOS_GMM_POSTERIORS3.csv cd $(WORKDIR)/04-09-1659;sed -i "s/^/04-09-1659_pre_ATROPOS_GMM_POSTERIORS3,/" 04-09-1659_pre_ATROPOS_GMM_POSTERIORS3.csv job_04-09-1659_wCSV_pre_ATROPOS_GMM_POSTERIORS4: cd $(WORKDIR)/04-09-1659;c3d 04-09-1659_pre_ATROPOS_GMM_POSTERIORS4.nii.gz 04-09-1659_labels.nii.gz -lstat > 04-09-1659_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/04-09-1659;sed -i "1,2d" 04-09-1659_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/04-09-1659;sed "s/\s\+/,/g" 04-09-1659_pre_ATROPOS_GMM_POSTERIORS4.txt > 04-09-1659_pre_ATROPOS_GMM_POSTERIORS4.csv cd $(WORKDIR)/04-09-1659;sed -i "s/^/04-09-1659_pre_ATROPOS_GMM_POSTERIORS4,/" 04-09-1659_pre_ATROPOS_GMM_POSTERIORS4.csv job_04-09-1659_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO: cd $(WORKDIR)/04-09-1659;c3d 04-09-1659_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.nii.gz 04-09-1659_labels.nii.gz -lstat > 04-09-1659_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/04-09-1659;sed -i "1,2d" 04-09-1659_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/04-09-1659;sed "s/\s\+/,/g" 04-09-1659_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt > 04-09-1659_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv cd $(WORKDIR)/04-09-1659;sed -i "s/^/04-09-1659_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO,/" 04-09-1659_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv job_04-09-1659_wCSV_pre_ENTROPY_RADIUS_1: cd $(WORKDIR)/04-09-1659;c3d 04-09-1659_pre_ENTROPY_RADIUS_1.nii.gz 04-09-1659_labels.nii.gz -lstat > 04-09-1659_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/04-09-1659;sed -i "1,2d" 04-09-1659_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/04-09-1659;sed "s/\s\+/,/g" 04-09-1659_pre_ENTROPY_RADIUS_1.txt > 04-09-1659_pre_ENTROPY_RADIUS_1.csv cd $(WORKDIR)/04-09-1659;sed -i "s/^/04-09-1659_pre_ENTROPY_RADIUS_1,/" 04-09-1659_pre_ENTROPY_RADIUS_1.csv job_04-09-1659_wCSV_pre_ENTROPY_RADIUS_3: cd $(WORKDIR)/04-09-1659;c3d 04-09-1659_pre_ENTROPY_RADIUS_3.nii.gz 04-09-1659_labels.nii.gz -lstat > 04-09-1659_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/04-09-1659;sed -i "1,2d" 04-09-1659_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/04-09-1659;sed "s/\s\+/,/g" 04-09-1659_pre_ENTROPY_RADIUS_3.txt > 04-09-1659_pre_ENTROPY_RADIUS_3.csv cd $(WORKDIR)/04-09-1659;sed -i "s/^/04-09-1659_pre_ENTROPY_RADIUS_3,/" 04-09-1659_pre_ENTROPY_RADIUS_3.csv job_04-09-1659_wCSV_pre_MEAN_RADIUS_1: cd $(WORKDIR)/04-09-1659;c3d 04-09-1659_pre_MEAN_RADIUS_1.nii.gz 04-09-1659_labels.nii.gz -lstat > 04-09-1659_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/04-09-1659;sed -i "1,2d" 04-09-1659_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/04-09-1659;sed "s/\s\+/,/g" 04-09-1659_pre_MEAN_RADIUS_1.txt > 04-09-1659_pre_MEAN_RADIUS_1.csv cd $(WORKDIR)/04-09-1659;sed -i "s/^/04-09-1659_pre_MEAN_RADIUS_1,/" 04-09-1659_pre_MEAN_RADIUS_1.csv job_04-09-1659_wCSV_pre_MEAN_RADIUS_3: cd $(WORKDIR)/04-09-1659;c3d 04-09-1659_pre_MEAN_RADIUS_3.nii.gz 04-09-1659_labels.nii.gz -lstat > 04-09-1659_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/04-09-1659;sed -i "1,2d" 04-09-1659_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/04-09-1659;sed "s/\s\+/,/g" 04-09-1659_pre_MEAN_RADIUS_3.txt > 04-09-1659_pre_MEAN_RADIUS_3.csv cd $(WORKDIR)/04-09-1659;sed -i "s/^/04-09-1659_pre_MEAN_RADIUS_3,/" 04-09-1659_pre_MEAN_RADIUS_3.csv job_04-09-1659_wCSV_pre_NORMALIZED: cd $(WORKDIR)/04-09-1659;c3d 04-09-1659_pre_NORMALIZED.nii.gz 04-09-1659_labels.nii.gz -lstat > 04-09-1659_pre_NORMALIZED.txt cd $(WORKDIR)/04-09-1659;sed -i "1,2d" 04-09-1659_pre_NORMALIZED.txt cd $(WORKDIR)/04-09-1659;sed "s/\s\+/,/g" 04-09-1659_pre_NORMALIZED.txt > 04-09-1659_pre_NORMALIZED.csv cd $(WORKDIR)/04-09-1659;sed -i "s/^/04-09-1659_pre_NORMALIZED,/" 04-09-1659_pre_NORMALIZED.csv job_04-09-1659_wCSV_pre_SIGMA_RADIUS_1: cd $(WORKDIR)/04-09-1659;c3d 04-09-1659_pre_SIGMA_RADIUS_1.nii.gz 04-09-1659_labels.nii.gz -lstat > 04-09-1659_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/04-09-1659;sed -i "1,2d" 04-09-1659_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/04-09-1659;sed "s/\s\+/,/g" 04-09-1659_pre_SIGMA_RADIUS_1.txt > 04-09-1659_pre_SIGMA_RADIUS_1.csv cd $(WORKDIR)/04-09-1659;sed -i "s/^/04-09-1659_pre_SIGMA_RADIUS_1,/" 04-09-1659_pre_SIGMA_RADIUS_1.csv job_04-09-1659_wCSV_pre_SIGMA_RADIUS_3: cd $(WORKDIR)/04-09-1659;c3d 04-09-1659_pre_SIGMA_RADIUS_3.nii.gz 04-09-1659_labels.nii.gz -lstat > 04-09-1659_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/04-09-1659;sed -i "1,2d" 04-09-1659_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/04-09-1659;sed "s/\s\+/,/g" 04-09-1659_pre_SIGMA_RADIUS_3.txt > 04-09-1659_pre_SIGMA_RADIUS_3.csv cd $(WORKDIR)/04-09-1659;sed -i "s/^/04-09-1659_pre_SIGMA_RADIUS_3,/" 04-09-1659_pre_SIGMA_RADIUS_3.csv job_04-09-1659_wCSV_pre_SKEWNESS_RADIUS_1: cd $(WORKDIR)/04-09-1659;c3d 04-09-1659_pre_SKEWNESS_RADIUS_1.nii.gz 04-09-1659_labels.nii.gz -lstat > 04-09-1659_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/04-09-1659;sed -i "1,2d" 04-09-1659_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/04-09-1659;sed "s/\s\+/,/g" 04-09-1659_pre_SKEWNESS_RADIUS_1.txt > 04-09-1659_pre_SKEWNESS_RADIUS_1.csv cd $(WORKDIR)/04-09-1659;sed -i "s/^/04-09-1659_pre_SKEWNESS_RADIUS_1,/" 04-09-1659_pre_SKEWNESS_RADIUS_1.csv job_04-09-1659_wCSV_pre_SKEWNESS_RADIUS_3: cd $(WORKDIR)/04-09-1659;c3d 04-09-1659_pre_SKEWNESS_RADIUS_3.nii.gz 04-09-1659_labels.nii.gz -lstat > 04-09-1659_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/04-09-1659;sed -i "1,2d" 04-09-1659_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/04-09-1659;sed "s/\s\+/,/g" 04-09-1659_pre_SKEWNESS_RADIUS_3.txt > 04-09-1659_pre_SKEWNESS_RADIUS_3.csv cd $(WORKDIR)/04-09-1659;sed -i "s/^/04-09-1659_pre_SKEWNESS_RADIUS_3,/" 04-09-1659_pre_SKEWNESS_RADIUS_3.csv job_04-09-1659_wCSV_pre__DIFFERENCE: cd $(WORKDIR)/04-09-1659;c3d 04-09-1659_pre__DIFFERENCE.nii.gz 04-09-1659_labels.nii.gz -lstat > 04-09-1659_pre__DIFFERENCE.txt cd $(WORKDIR)/04-09-1659;sed -i "1,2d" 04-09-1659_pre__DIFFERENCE.txt cd $(WORKDIR)/04-09-1659;sed "s/\s\+/,/g" 04-09-1659_pre__DIFFERENCE.txt > 04-09-1659_pre__DIFFERENCE.csv cd $(WORKDIR)/04-09-1659;sed -i "s/^/04-09-1659_pre__DIFFERENCE,/" 04-09-1659_pre__DIFFERENCE.csv job_05-09-1667_crFI: cd $(WORKDIR)/05-09-1667;c3d 05-09-1667_grey.nii.gz 05-09-1667_labels.nii.gz -copy-transform -o 05-09-1667_labels.nii.gz cd $(WORKDIR)/05-09-1667;c3d 05-09-1667_grey.nii.gz -orient RAI -o 05-09-1667_grey.nii.gz cd $(WORKDIR)/05-09-1667;c3d 05-09-1667_labels.nii.gz -orient RAI -o 05-09-1667_labels.nii.gz cd $(WORKDIR)/05-09-1667;c3d 05-09-1667_labels.nii.gz -binarize -o 05-09-1667_mask.nii.gz cd $(WORKDIR)/05-09-1667;../createFeatureImagesOvary.sh -d 3 -x 05-09-1667_mask.nii.gz -l3 -n pre -a 05-09-1667_grey.nii.gz -f 0x2 -o ./05-09-1667_ -r 1 -r 3 -s 2 -b 4 job_05-09-1667_wCSV_NORMALIZED_DISTANCE: cd $(WORKDIR)/05-09-1667;c3d 05-09-1667_NORMALIZED_DISTANCE.nii.gz 05-09-1667_labels.nii.gz -lstat > 05-09-1667_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/05-09-1667;sed -i "1,2d" 05-09-1667_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/05-09-1667;sed "s/\s\+/,/g" 05-09-1667_NORMALIZED_DISTANCE.txt > 05-09-1667_NORMALIZED_DISTANCE.csv cd $(WORKDIR)/05-09-1667;sed -i "s/^/05-09-1667_NORMALIZED_DISTANCE,/" 05-09-1667_NORMALIZED_DISTANCE.csv job_05-09-1667_wCSV_pre_ATROPOS_GMM: cd $(WORKDIR)/05-09-1667;c3d 05-09-1667_pre_ATROPOS_GMM.nii.gz 05-09-1667_labels.nii.gz -lstat > 05-09-1667_pre_ATROPOS_GMM.txt cd $(WORKDIR)/05-09-1667;sed -i "1,2d" 05-09-1667_pre_ATROPOS_GMM.txt cd $(WORKDIR)/05-09-1667;sed "s/\s\+/,/g" 05-09-1667_pre_ATROPOS_GMM.txt > 05-09-1667_pre_ATROPOS_GMM.csv cd $(WORKDIR)/05-09-1667;sed -i "s/^/05-09-1667_pre_ATROPOS_GMM,/" 05-09-1667_pre_ATROPOS_GMM.csv job_05-09-1667_wCSV_pre_ATROPOS_GMM_ECCENTRICITY: cd $(WORKDIR)/05-09-1667;c3d 05-09-1667_pre_ATROPOS_GMM_ECCENTRICITY.nii.gz 05-09-1667_labels.nii.gz -lstat > 05-09-1667_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/05-09-1667;sed -i "1,2d" 05-09-1667_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/05-09-1667;sed "s/\s\+/,/g" 05-09-1667_pre_ATROPOS_GMM_ECCENTRICITY.txt > 05-09-1667_pre_ATROPOS_GMM_ECCENTRICITY.csv cd $(WORKDIR)/05-09-1667;sed -i "s/^/05-09-1667_pre_ATROPOS_GMM_ECCENTRICITY,/" 05-09-1667_pre_ATROPOS_GMM_ECCENTRICITY.csv job_05-09-1667_wCSV_pre_ATROPOS_GMM_ELONGATION: cd $(WORKDIR)/05-09-1667;c3d 05-09-1667_pre_ATROPOS_GMM_ELONGATION.nii.gz 05-09-1667_labels.nii.gz -lstat > 05-09-1667_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/05-09-1667;sed -i "1,2d" 05-09-1667_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/05-09-1667;sed "s/\s\+/,/g" 05-09-1667_pre_ATROPOS_GMM_ELONGATION.txt > 05-09-1667_pre_ATROPOS_GMM_ELONGATION.csv cd $(WORKDIR)/05-09-1667;sed -i "s/^/05-09-1667_pre_ATROPOS_GMM_ELONGATION,/" 05-09-1667_pre_ATROPOS_GMM_ELONGATION.csv job_05-09-1667_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE: cd $(WORKDIR)/05-09-1667;c3d 05-09-1667_pre_ATROPOS_GMM_LABEL3_DISTANCE.nii.gz 05-09-1667_labels.nii.gz -lstat > 05-09-1667_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/05-09-1667;sed -i "1,2d" 05-09-1667_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/05-09-1667;sed "s/\s\+/,/g" 05-09-1667_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt > 05-09-1667_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv cd $(WORKDIR)/05-09-1667;sed -i "s/^/05-09-1667_pre_ATROPOS_GMM_LABEL3_DISTANCE,/" 05-09-1667_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv job_05-09-1667_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME: cd $(WORKDIR)/05-09-1667;c3d 05-09-1667_pre_ATROPOS_GMM_PHYSICAL_VOLUME.nii.gz 05-09-1667_labels.nii.gz -lstat > 05-09-1667_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/05-09-1667;sed -i "1,2d" 05-09-1667_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/05-09-1667;sed "s/\s\+/,/g" 05-09-1667_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt > 05-09-1667_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv cd $(WORKDIR)/05-09-1667;sed -i "s/^/05-09-1667_pre_ATROPOS_GMM_PHYSICAL_VOLUME,/" 05-09-1667_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv job_05-09-1667_wCSV_pre_ATROPOS_GMM_POSTERIORS1: cd $(WORKDIR)/05-09-1667;c3d 05-09-1667_pre_ATROPOS_GMM_POSTERIORS1.nii.gz 05-09-1667_labels.nii.gz -lstat > 05-09-1667_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/05-09-1667;sed -i "1,2d" 05-09-1667_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/05-09-1667;sed "s/\s\+/,/g" 05-09-1667_pre_ATROPOS_GMM_POSTERIORS1.txt > 05-09-1667_pre_ATROPOS_GMM_POSTERIORS1.csv cd $(WORKDIR)/05-09-1667;sed -i "s/^/05-09-1667_pre_ATROPOS_GMM_POSTERIORS1,/" 05-09-1667_pre_ATROPOS_GMM_POSTERIORS1.csv job_05-09-1667_wCSV_pre_ATROPOS_GMM_POSTERIORS2: cd $(WORKDIR)/05-09-1667;c3d 05-09-1667_pre_ATROPOS_GMM_POSTERIORS2.nii.gz 05-09-1667_labels.nii.gz -lstat > 05-09-1667_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/05-09-1667;sed -i "1,2d" 05-09-1667_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/05-09-1667;sed "s/\s\+/,/g" 05-09-1667_pre_ATROPOS_GMM_POSTERIORS2.txt > 05-09-1667_pre_ATROPOS_GMM_POSTERIORS2.csv cd $(WORKDIR)/05-09-1667;sed -i "s/^/05-09-1667_pre_ATROPOS_GMM_POSTERIORS2,/" 05-09-1667_pre_ATROPOS_GMM_POSTERIORS2.csv job_05-09-1667_wCSV_pre_ATROPOS_GMM_POSTERIORS3: cd $(WORKDIR)/05-09-1667;c3d 05-09-1667_pre_ATROPOS_GMM_POSTERIORS3.nii.gz 05-09-1667_labels.nii.gz -lstat > 05-09-1667_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/05-09-1667;sed -i "1,2d" 05-09-1667_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/05-09-1667;sed "s/\s\+/,/g" 05-09-1667_pre_ATROPOS_GMM_POSTERIORS3.txt > 05-09-1667_pre_ATROPOS_GMM_POSTERIORS3.csv cd $(WORKDIR)/05-09-1667;sed -i "s/^/05-09-1667_pre_ATROPOS_GMM_POSTERIORS3,/" 05-09-1667_pre_ATROPOS_GMM_POSTERIORS3.csv job_05-09-1667_wCSV_pre_ATROPOS_GMM_POSTERIORS4: cd $(WORKDIR)/05-09-1667;c3d 05-09-1667_pre_ATROPOS_GMM_POSTERIORS4.nii.gz 05-09-1667_labels.nii.gz -lstat > 05-09-1667_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/05-09-1667;sed -i "1,2d" 05-09-1667_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/05-09-1667;sed "s/\s\+/,/g" 05-09-1667_pre_ATROPOS_GMM_POSTERIORS4.txt > 05-09-1667_pre_ATROPOS_GMM_POSTERIORS4.csv cd $(WORKDIR)/05-09-1667;sed -i "s/^/05-09-1667_pre_ATROPOS_GMM_POSTERIORS4,/" 05-09-1667_pre_ATROPOS_GMM_POSTERIORS4.csv job_05-09-1667_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO: cd $(WORKDIR)/05-09-1667;c3d 05-09-1667_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.nii.gz 05-09-1667_labels.nii.gz -lstat > 05-09-1667_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/05-09-1667;sed -i "1,2d" 05-09-1667_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/05-09-1667;sed "s/\s\+/,/g" 05-09-1667_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt > 05-09-1667_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv cd $(WORKDIR)/05-09-1667;sed -i "s/^/05-09-1667_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO,/" 05-09-1667_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv job_05-09-1667_wCSV_pre_ENTROPY_RADIUS_1: cd $(WORKDIR)/05-09-1667;c3d 05-09-1667_pre_ENTROPY_RADIUS_1.nii.gz 05-09-1667_labels.nii.gz -lstat > 05-09-1667_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/05-09-1667;sed -i "1,2d" 05-09-1667_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/05-09-1667;sed "s/\s\+/,/g" 05-09-1667_pre_ENTROPY_RADIUS_1.txt > 05-09-1667_pre_ENTROPY_RADIUS_1.csv cd $(WORKDIR)/05-09-1667;sed -i "s/^/05-09-1667_pre_ENTROPY_RADIUS_1,/" 05-09-1667_pre_ENTROPY_RADIUS_1.csv job_05-09-1667_wCSV_pre_ENTROPY_RADIUS_3: cd $(WORKDIR)/05-09-1667;c3d 05-09-1667_pre_ENTROPY_RADIUS_3.nii.gz 05-09-1667_labels.nii.gz -lstat > 05-09-1667_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/05-09-1667;sed -i "1,2d" 05-09-1667_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/05-09-1667;sed "s/\s\+/,/g" 05-09-1667_pre_ENTROPY_RADIUS_3.txt > 05-09-1667_pre_ENTROPY_RADIUS_3.csv cd $(WORKDIR)/05-09-1667;sed -i "s/^/05-09-1667_pre_ENTROPY_RADIUS_3,/" 05-09-1667_pre_ENTROPY_RADIUS_3.csv job_05-09-1667_wCSV_pre_MEAN_RADIUS_1: cd $(WORKDIR)/05-09-1667;c3d 05-09-1667_pre_MEAN_RADIUS_1.nii.gz 05-09-1667_labels.nii.gz -lstat > 05-09-1667_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/05-09-1667;sed -i "1,2d" 05-09-1667_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/05-09-1667;sed "s/\s\+/,/g" 05-09-1667_pre_MEAN_RADIUS_1.txt > 05-09-1667_pre_MEAN_RADIUS_1.csv cd $(WORKDIR)/05-09-1667;sed -i "s/^/05-09-1667_pre_MEAN_RADIUS_1,/" 05-09-1667_pre_MEAN_RADIUS_1.csv job_05-09-1667_wCSV_pre_MEAN_RADIUS_3: cd $(WORKDIR)/05-09-1667;c3d 05-09-1667_pre_MEAN_RADIUS_3.nii.gz 05-09-1667_labels.nii.gz -lstat > 05-09-1667_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/05-09-1667;sed -i "1,2d" 05-09-1667_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/05-09-1667;sed "s/\s\+/,/g" 05-09-1667_pre_MEAN_RADIUS_3.txt > 05-09-1667_pre_MEAN_RADIUS_3.csv cd $(WORKDIR)/05-09-1667;sed -i "s/^/05-09-1667_pre_MEAN_RADIUS_3,/" 05-09-1667_pre_MEAN_RADIUS_3.csv job_05-09-1667_wCSV_pre_NORMALIZED: cd $(WORKDIR)/05-09-1667;c3d 05-09-1667_pre_NORMALIZED.nii.gz 05-09-1667_labels.nii.gz -lstat > 05-09-1667_pre_NORMALIZED.txt cd $(WORKDIR)/05-09-1667;sed -i "1,2d" 05-09-1667_pre_NORMALIZED.txt cd $(WORKDIR)/05-09-1667;sed "s/\s\+/,/g" 05-09-1667_pre_NORMALIZED.txt > 05-09-1667_pre_NORMALIZED.csv cd $(WORKDIR)/05-09-1667;sed -i "s/^/05-09-1667_pre_NORMALIZED,/" 05-09-1667_pre_NORMALIZED.csv job_05-09-1667_wCSV_pre_SIGMA_RADIUS_1: cd $(WORKDIR)/05-09-1667;c3d 05-09-1667_pre_SIGMA_RADIUS_1.nii.gz 05-09-1667_labels.nii.gz -lstat > 05-09-1667_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/05-09-1667;sed -i "1,2d" 05-09-1667_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/05-09-1667;sed "s/\s\+/,/g" 05-09-1667_pre_SIGMA_RADIUS_1.txt > 05-09-1667_pre_SIGMA_RADIUS_1.csv cd $(WORKDIR)/05-09-1667;sed -i "s/^/05-09-1667_pre_SIGMA_RADIUS_1,/" 05-09-1667_pre_SIGMA_RADIUS_1.csv job_05-09-1667_wCSV_pre_SIGMA_RADIUS_3: cd $(WORKDIR)/05-09-1667;c3d 05-09-1667_pre_SIGMA_RADIUS_3.nii.gz 05-09-1667_labels.nii.gz -lstat > 05-09-1667_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/05-09-1667;sed -i "1,2d" 05-09-1667_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/05-09-1667;sed "s/\s\+/,/g" 05-09-1667_pre_SIGMA_RADIUS_3.txt > 05-09-1667_pre_SIGMA_RADIUS_3.csv cd $(WORKDIR)/05-09-1667;sed -i "s/^/05-09-1667_pre_SIGMA_RADIUS_3,/" 05-09-1667_pre_SIGMA_RADIUS_3.csv job_05-09-1667_wCSV_pre_SKEWNESS_RADIUS_1: cd $(WORKDIR)/05-09-1667;c3d 05-09-1667_pre_SKEWNESS_RADIUS_1.nii.gz 05-09-1667_labels.nii.gz -lstat > 05-09-1667_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/05-09-1667;sed -i "1,2d" 05-09-1667_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/05-09-1667;sed "s/\s\+/,/g" 05-09-1667_pre_SKEWNESS_RADIUS_1.txt > 05-09-1667_pre_SKEWNESS_RADIUS_1.csv cd $(WORKDIR)/05-09-1667;sed -i "s/^/05-09-1667_pre_SKEWNESS_RADIUS_1,/" 05-09-1667_pre_SKEWNESS_RADIUS_1.csv job_05-09-1667_wCSV_pre_SKEWNESS_RADIUS_3: cd $(WORKDIR)/05-09-1667;c3d 05-09-1667_pre_SKEWNESS_RADIUS_3.nii.gz 05-09-1667_labels.nii.gz -lstat > 05-09-1667_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/05-09-1667;sed -i "1,2d" 05-09-1667_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/05-09-1667;sed "s/\s\+/,/g" 05-09-1667_pre_SKEWNESS_RADIUS_3.txt > 05-09-1667_pre_SKEWNESS_RADIUS_3.csv cd $(WORKDIR)/05-09-1667;sed -i "s/^/05-09-1667_pre_SKEWNESS_RADIUS_3,/" 05-09-1667_pre_SKEWNESS_RADIUS_3.csv job_05-09-1667_wCSV_pre__DIFFERENCE: cd $(WORKDIR)/05-09-1667;c3d 05-09-1667_pre__DIFFERENCE.nii.gz 05-09-1667_labels.nii.gz -lstat > 05-09-1667_pre__DIFFERENCE.txt cd $(WORKDIR)/05-09-1667;sed -i "1,2d" 05-09-1667_pre__DIFFERENCE.txt cd $(WORKDIR)/05-09-1667;sed "s/\s\+/,/g" 05-09-1667_pre__DIFFERENCE.txt > 05-09-1667_pre__DIFFERENCE.csv cd $(WORKDIR)/05-09-1667;sed -i "s/^/05-09-1667_pre__DIFFERENCE,/" 05-09-1667_pre__DIFFERENCE.csv job_06-09-1669_crFI: cd $(WORKDIR)/06-09-1669;c3d 06-09-1669_grey.nii.gz 06-09-1669_labels.nii.gz -copy-transform -o 06-09-1669_labels.nii.gz cd $(WORKDIR)/06-09-1669;c3d 06-09-1669_grey.nii.gz -orient RAI -o 06-09-1669_grey.nii.gz cd $(WORKDIR)/06-09-1669;c3d 06-09-1669_labels.nii.gz -orient RAI -o 06-09-1669_labels.nii.gz cd $(WORKDIR)/06-09-1669;c3d 06-09-1669_labels.nii.gz -binarize -o 06-09-1669_mask.nii.gz cd $(WORKDIR)/06-09-1669;../createFeatureImagesOvary.sh -d 3 -x 06-09-1669_mask.nii.gz -l3 -n pre -a 06-09-1669_grey.nii.gz -f 0x2 -o ./06-09-1669_ -r 1 -r 3 -s 2 -b 4 job_06-09-1669_wCSV_NORMALIZED_DISTANCE: cd $(WORKDIR)/06-09-1669;c3d 06-09-1669_NORMALIZED_DISTANCE.nii.gz 06-09-1669_labels.nii.gz -lstat > 06-09-1669_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/06-09-1669;sed -i "1,2d" 06-09-1669_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/06-09-1669;sed "s/\s\+/,/g" 06-09-1669_NORMALIZED_DISTANCE.txt > 06-09-1669_NORMALIZED_DISTANCE.csv cd $(WORKDIR)/06-09-1669;sed -i "s/^/06-09-1669_NORMALIZED_DISTANCE,/" 06-09-1669_NORMALIZED_DISTANCE.csv job_06-09-1669_wCSV_pre_ATROPOS_GMM: cd $(WORKDIR)/06-09-1669;c3d 06-09-1669_pre_ATROPOS_GMM.nii.gz 06-09-1669_labels.nii.gz -lstat > 06-09-1669_pre_ATROPOS_GMM.txt cd $(WORKDIR)/06-09-1669;sed -i "1,2d" 06-09-1669_pre_ATROPOS_GMM.txt cd $(WORKDIR)/06-09-1669;sed "s/\s\+/,/g" 06-09-1669_pre_ATROPOS_GMM.txt > 06-09-1669_pre_ATROPOS_GMM.csv cd $(WORKDIR)/06-09-1669;sed -i "s/^/06-09-1669_pre_ATROPOS_GMM,/" 06-09-1669_pre_ATROPOS_GMM.csv job_06-09-1669_wCSV_pre_ATROPOS_GMM_ECCENTRICITY: cd $(WORKDIR)/06-09-1669;c3d 06-09-1669_pre_ATROPOS_GMM_ECCENTRICITY.nii.gz 06-09-1669_labels.nii.gz -lstat > 06-09-1669_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/06-09-1669;sed -i "1,2d" 06-09-1669_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/06-09-1669;sed "s/\s\+/,/g" 06-09-1669_pre_ATROPOS_GMM_ECCENTRICITY.txt > 06-09-1669_pre_ATROPOS_GMM_ECCENTRICITY.csv cd $(WORKDIR)/06-09-1669;sed -i "s/^/06-09-1669_pre_ATROPOS_GMM_ECCENTRICITY,/" 06-09-1669_pre_ATROPOS_GMM_ECCENTRICITY.csv job_06-09-1669_wCSV_pre_ATROPOS_GMM_ELONGATION: cd $(WORKDIR)/06-09-1669;c3d 06-09-1669_pre_ATROPOS_GMM_ELONGATION.nii.gz 06-09-1669_labels.nii.gz -lstat > 06-09-1669_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/06-09-1669;sed -i "1,2d" 06-09-1669_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/06-09-1669;sed "s/\s\+/,/g" 06-09-1669_pre_ATROPOS_GMM_ELONGATION.txt > 06-09-1669_pre_ATROPOS_GMM_ELONGATION.csv cd $(WORKDIR)/06-09-1669;sed -i "s/^/06-09-1669_pre_ATROPOS_GMM_ELONGATION,/" 06-09-1669_pre_ATROPOS_GMM_ELONGATION.csv job_06-09-1669_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE: cd $(WORKDIR)/06-09-1669;c3d 06-09-1669_pre_ATROPOS_GMM_LABEL3_DISTANCE.nii.gz 06-09-1669_labels.nii.gz -lstat > 06-09-1669_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/06-09-1669;sed -i "1,2d" 06-09-1669_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/06-09-1669;sed "s/\s\+/,/g" 06-09-1669_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt > 06-09-1669_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv cd $(WORKDIR)/06-09-1669;sed -i "s/^/06-09-1669_pre_ATROPOS_GMM_LABEL3_DISTANCE,/" 06-09-1669_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv job_06-09-1669_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME: cd $(WORKDIR)/06-09-1669;c3d 06-09-1669_pre_ATROPOS_GMM_PHYSICAL_VOLUME.nii.gz 06-09-1669_labels.nii.gz -lstat > 06-09-1669_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/06-09-1669;sed -i "1,2d" 06-09-1669_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/06-09-1669;sed "s/\s\+/,/g" 06-09-1669_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt > 06-09-1669_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv cd $(WORKDIR)/06-09-1669;sed -i "s/^/06-09-1669_pre_ATROPOS_GMM_PHYSICAL_VOLUME,/" 06-09-1669_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv job_06-09-1669_wCSV_pre_ATROPOS_GMM_POSTERIORS1: cd $(WORKDIR)/06-09-1669;c3d 06-09-1669_pre_ATROPOS_GMM_POSTERIORS1.nii.gz 06-09-1669_labels.nii.gz -lstat > 06-09-1669_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/06-09-1669;sed -i "1,2d" 06-09-1669_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/06-09-1669;sed "s/\s\+/,/g" 06-09-1669_pre_ATROPOS_GMM_POSTERIORS1.txt > 06-09-1669_pre_ATROPOS_GMM_POSTERIORS1.csv cd $(WORKDIR)/06-09-1669;sed -i "s/^/06-09-1669_pre_ATROPOS_GMM_POSTERIORS1,/" 06-09-1669_pre_ATROPOS_GMM_POSTERIORS1.csv job_06-09-1669_wCSV_pre_ATROPOS_GMM_POSTERIORS2: cd $(WORKDIR)/06-09-1669;c3d 06-09-1669_pre_ATROPOS_GMM_POSTERIORS2.nii.gz 06-09-1669_labels.nii.gz -lstat > 06-09-1669_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/06-09-1669;sed -i "1,2d" 06-09-1669_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/06-09-1669;sed "s/\s\+/,/g" 06-09-1669_pre_ATROPOS_GMM_POSTERIORS2.txt > 06-09-1669_pre_ATROPOS_GMM_POSTERIORS2.csv cd $(WORKDIR)/06-09-1669;sed -i "s/^/06-09-1669_pre_ATROPOS_GMM_POSTERIORS2,/" 06-09-1669_pre_ATROPOS_GMM_POSTERIORS2.csv job_06-09-1669_wCSV_pre_ATROPOS_GMM_POSTERIORS3: cd $(WORKDIR)/06-09-1669;c3d 06-09-1669_pre_ATROPOS_GMM_POSTERIORS3.nii.gz 06-09-1669_labels.nii.gz -lstat > 06-09-1669_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/06-09-1669;sed -i "1,2d" 06-09-1669_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/06-09-1669;sed "s/\s\+/,/g" 06-09-1669_pre_ATROPOS_GMM_POSTERIORS3.txt > 06-09-1669_pre_ATROPOS_GMM_POSTERIORS3.csv cd $(WORKDIR)/06-09-1669;sed -i "s/^/06-09-1669_pre_ATROPOS_GMM_POSTERIORS3,/" 06-09-1669_pre_ATROPOS_GMM_POSTERIORS3.csv job_06-09-1669_wCSV_pre_ATROPOS_GMM_POSTERIORS4: cd $(WORKDIR)/06-09-1669;c3d 06-09-1669_pre_ATROPOS_GMM_POSTERIORS4.nii.gz 06-09-1669_labels.nii.gz -lstat > 06-09-1669_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/06-09-1669;sed -i "1,2d" 06-09-1669_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/06-09-1669;sed "s/\s\+/,/g" 06-09-1669_pre_ATROPOS_GMM_POSTERIORS4.txt > 06-09-1669_pre_ATROPOS_GMM_POSTERIORS4.csv cd $(WORKDIR)/06-09-1669;sed -i "s/^/06-09-1669_pre_ATROPOS_GMM_POSTERIORS4,/" 06-09-1669_pre_ATROPOS_GMM_POSTERIORS4.csv job_06-09-1669_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO: cd $(WORKDIR)/06-09-1669;c3d 06-09-1669_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.nii.gz 06-09-1669_labels.nii.gz -lstat > 06-09-1669_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/06-09-1669;sed -i "1,2d" 06-09-1669_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/06-09-1669;sed "s/\s\+/,/g" 06-09-1669_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt > 06-09-1669_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv cd $(WORKDIR)/06-09-1669;sed -i "s/^/06-09-1669_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO,/" 06-09-1669_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv job_06-09-1669_wCSV_pre_ENTROPY_RADIUS_1: cd $(WORKDIR)/06-09-1669;c3d 06-09-1669_pre_ENTROPY_RADIUS_1.nii.gz 06-09-1669_labels.nii.gz -lstat > 06-09-1669_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/06-09-1669;sed -i "1,2d" 06-09-1669_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/06-09-1669;sed "s/\s\+/,/g" 06-09-1669_pre_ENTROPY_RADIUS_1.txt > 06-09-1669_pre_ENTROPY_RADIUS_1.csv cd $(WORKDIR)/06-09-1669;sed -i "s/^/06-09-1669_pre_ENTROPY_RADIUS_1,/" 06-09-1669_pre_ENTROPY_RADIUS_1.csv job_06-09-1669_wCSV_pre_ENTROPY_RADIUS_3: cd $(WORKDIR)/06-09-1669;c3d 06-09-1669_pre_ENTROPY_RADIUS_3.nii.gz 06-09-1669_labels.nii.gz -lstat > 06-09-1669_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/06-09-1669;sed -i "1,2d" 06-09-1669_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/06-09-1669;sed "s/\s\+/,/g" 06-09-1669_pre_ENTROPY_RADIUS_3.txt > 06-09-1669_pre_ENTROPY_RADIUS_3.csv cd $(WORKDIR)/06-09-1669;sed -i "s/^/06-09-1669_pre_ENTROPY_RADIUS_3,/" 06-09-1669_pre_ENTROPY_RADIUS_3.csv job_06-09-1669_wCSV_pre_MEAN_RADIUS_1: cd $(WORKDIR)/06-09-1669;c3d 06-09-1669_pre_MEAN_RADIUS_1.nii.gz 06-09-1669_labels.nii.gz -lstat > 06-09-1669_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/06-09-1669;sed -i "1,2d" 06-09-1669_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/06-09-1669;sed "s/\s\+/,/g" 06-09-1669_pre_MEAN_RADIUS_1.txt > 06-09-1669_pre_MEAN_RADIUS_1.csv cd $(WORKDIR)/06-09-1669;sed -i "s/^/06-09-1669_pre_MEAN_RADIUS_1,/" 06-09-1669_pre_MEAN_RADIUS_1.csv job_06-09-1669_wCSV_pre_MEAN_RADIUS_3: cd $(WORKDIR)/06-09-1669;c3d 06-09-1669_pre_MEAN_RADIUS_3.nii.gz 06-09-1669_labels.nii.gz -lstat > 06-09-1669_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/06-09-1669;sed -i "1,2d" 06-09-1669_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/06-09-1669;sed "s/\s\+/,/g" 06-09-1669_pre_MEAN_RADIUS_3.txt > 06-09-1669_pre_MEAN_RADIUS_3.csv cd $(WORKDIR)/06-09-1669;sed -i "s/^/06-09-1669_pre_MEAN_RADIUS_3,/" 06-09-1669_pre_MEAN_RADIUS_3.csv job_06-09-1669_wCSV_pre_NORMALIZED: cd $(WORKDIR)/06-09-1669;c3d 06-09-1669_pre_NORMALIZED.nii.gz 06-09-1669_labels.nii.gz -lstat > 06-09-1669_pre_NORMALIZED.txt cd $(WORKDIR)/06-09-1669;sed -i "1,2d" 06-09-1669_pre_NORMALIZED.txt cd $(WORKDIR)/06-09-1669;sed "s/\s\+/,/g" 06-09-1669_pre_NORMALIZED.txt > 06-09-1669_pre_NORMALIZED.csv cd $(WORKDIR)/06-09-1669;sed -i "s/^/06-09-1669_pre_NORMALIZED,/" 06-09-1669_pre_NORMALIZED.csv job_06-09-1669_wCSV_pre_SIGMA_RADIUS_1: cd $(WORKDIR)/06-09-1669;c3d 06-09-1669_pre_SIGMA_RADIUS_1.nii.gz 06-09-1669_labels.nii.gz -lstat > 06-09-1669_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/06-09-1669;sed -i "1,2d" 06-09-1669_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/06-09-1669;sed "s/\s\+/,/g" 06-09-1669_pre_SIGMA_RADIUS_1.txt > 06-09-1669_pre_SIGMA_RADIUS_1.csv cd $(WORKDIR)/06-09-1669;sed -i "s/^/06-09-1669_pre_SIGMA_RADIUS_1,/" 06-09-1669_pre_SIGMA_RADIUS_1.csv job_06-09-1669_wCSV_pre_SIGMA_RADIUS_3: cd $(WORKDIR)/06-09-1669;c3d 06-09-1669_pre_SIGMA_RADIUS_3.nii.gz 06-09-1669_labels.nii.gz -lstat > 06-09-1669_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/06-09-1669;sed -i "1,2d" 06-09-1669_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/06-09-1669;sed "s/\s\+/,/g" 06-09-1669_pre_SIGMA_RADIUS_3.txt > 06-09-1669_pre_SIGMA_RADIUS_3.csv cd $(WORKDIR)/06-09-1669;sed -i "s/^/06-09-1669_pre_SIGMA_RADIUS_3,/" 06-09-1669_pre_SIGMA_RADIUS_3.csv job_06-09-1669_wCSV_pre_SKEWNESS_RADIUS_1: cd $(WORKDIR)/06-09-1669;c3d 06-09-1669_pre_SKEWNESS_RADIUS_1.nii.gz 06-09-1669_labels.nii.gz -lstat > 06-09-1669_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/06-09-1669;sed -i "1,2d" 06-09-1669_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/06-09-1669;sed "s/\s\+/,/g" 06-09-1669_pre_SKEWNESS_RADIUS_1.txt > 06-09-1669_pre_SKEWNESS_RADIUS_1.csv cd $(WORKDIR)/06-09-1669;sed -i "s/^/06-09-1669_pre_SKEWNESS_RADIUS_1,/" 06-09-1669_pre_SKEWNESS_RADIUS_1.csv job_06-09-1669_wCSV_pre_SKEWNESS_RADIUS_3: cd $(WORKDIR)/06-09-1669;c3d 06-09-1669_pre_SKEWNESS_RADIUS_3.nii.gz 06-09-1669_labels.nii.gz -lstat > 06-09-1669_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/06-09-1669;sed -i "1,2d" 06-09-1669_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/06-09-1669;sed "s/\s\+/,/g" 06-09-1669_pre_SKEWNESS_RADIUS_3.txt > 06-09-1669_pre_SKEWNESS_RADIUS_3.csv cd $(WORKDIR)/06-09-1669;sed -i "s/^/06-09-1669_pre_SKEWNESS_RADIUS_3,/" 06-09-1669_pre_SKEWNESS_RADIUS_3.csv job_06-09-1669_wCSV_pre__DIFFERENCE: cd $(WORKDIR)/06-09-1669;c3d 06-09-1669_pre__DIFFERENCE.nii.gz 06-09-1669_labels.nii.gz -lstat > 06-09-1669_pre__DIFFERENCE.txt cd $(WORKDIR)/06-09-1669;sed -i "1,2d" 06-09-1669_pre__DIFFERENCE.txt cd $(WORKDIR)/06-09-1669;sed "s/\s\+/,/g" 06-09-1669_pre__DIFFERENCE.txt > 06-09-1669_pre__DIFFERENCE.csv cd $(WORKDIR)/06-09-1669;sed -i "s/^/06-09-1669_pre__DIFFERENCE,/" 06-09-1669_pre__DIFFERENCE.csv job_07-09-1672_crFI: cd $(WORKDIR)/07-09-1672;c3d 07-09-1672_grey.nii.gz 07-09-1672_labels.nii.gz -copy-transform -o 07-09-1672_labels.nii.gz cd $(WORKDIR)/07-09-1672;c3d 07-09-1672_grey.nii.gz -orient RAI -o 07-09-1672_grey.nii.gz cd $(WORKDIR)/07-09-1672;c3d 07-09-1672_labels.nii.gz -orient RAI -o 07-09-1672_labels.nii.gz cd $(WORKDIR)/07-09-1672;c3d 07-09-1672_labels.nii.gz -binarize -o 07-09-1672_mask.nii.gz cd $(WORKDIR)/07-09-1672;../createFeatureImagesOvary.sh -d 3 -x 07-09-1672_mask.nii.gz -l3 -n pre -a 07-09-1672_grey.nii.gz -f 0x2 -o ./07-09-1672_ -r 1 -r 3 -s 2 -b 4 job_07-09-1672_wCSV_NORMALIZED_DISTANCE: cd $(WORKDIR)/07-09-1672;c3d 07-09-1672_NORMALIZED_DISTANCE.nii.gz 07-09-1672_labels.nii.gz -lstat > 07-09-1672_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/07-09-1672;sed -i "1,2d" 07-09-1672_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/07-09-1672;sed "s/\s\+/,/g" 07-09-1672_NORMALIZED_DISTANCE.txt > 07-09-1672_NORMALIZED_DISTANCE.csv cd $(WORKDIR)/07-09-1672;sed -i "s/^/07-09-1672_NORMALIZED_DISTANCE,/" 07-09-1672_NORMALIZED_DISTANCE.csv job_07-09-1672_wCSV_pre_ATROPOS_GMM: cd $(WORKDIR)/07-09-1672;c3d 07-09-1672_pre_ATROPOS_GMM.nii.gz 07-09-1672_labels.nii.gz -lstat > 07-09-1672_pre_ATROPOS_GMM.txt cd $(WORKDIR)/07-09-1672;sed -i "1,2d" 07-09-1672_pre_ATROPOS_GMM.txt cd $(WORKDIR)/07-09-1672;sed "s/\s\+/,/g" 07-09-1672_pre_ATROPOS_GMM.txt > 07-09-1672_pre_ATROPOS_GMM.csv cd $(WORKDIR)/07-09-1672;sed -i "s/^/07-09-1672_pre_ATROPOS_GMM,/" 07-09-1672_pre_ATROPOS_GMM.csv job_07-09-1672_wCSV_pre_ATROPOS_GMM_ECCENTRICITY: cd $(WORKDIR)/07-09-1672;c3d 07-09-1672_pre_ATROPOS_GMM_ECCENTRICITY.nii.gz 07-09-1672_labels.nii.gz -lstat > 07-09-1672_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/07-09-1672;sed -i "1,2d" 07-09-1672_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/07-09-1672;sed "s/\s\+/,/g" 07-09-1672_pre_ATROPOS_GMM_ECCENTRICITY.txt > 07-09-1672_pre_ATROPOS_GMM_ECCENTRICITY.csv cd $(WORKDIR)/07-09-1672;sed -i "s/^/07-09-1672_pre_ATROPOS_GMM_ECCENTRICITY,/" 07-09-1672_pre_ATROPOS_GMM_ECCENTRICITY.csv job_07-09-1672_wCSV_pre_ATROPOS_GMM_ELONGATION: cd $(WORKDIR)/07-09-1672;c3d 07-09-1672_pre_ATROPOS_GMM_ELONGATION.nii.gz 07-09-1672_labels.nii.gz -lstat > 07-09-1672_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/07-09-1672;sed -i "1,2d" 07-09-1672_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/07-09-1672;sed "s/\s\+/,/g" 07-09-1672_pre_ATROPOS_GMM_ELONGATION.txt > 07-09-1672_pre_ATROPOS_GMM_ELONGATION.csv cd $(WORKDIR)/07-09-1672;sed -i "s/^/07-09-1672_pre_ATROPOS_GMM_ELONGATION,/" 07-09-1672_pre_ATROPOS_GMM_ELONGATION.csv job_07-09-1672_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE: cd $(WORKDIR)/07-09-1672;c3d 07-09-1672_pre_ATROPOS_GMM_LABEL3_DISTANCE.nii.gz 07-09-1672_labels.nii.gz -lstat > 07-09-1672_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/07-09-1672;sed -i "1,2d" 07-09-1672_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/07-09-1672;sed "s/\s\+/,/g" 07-09-1672_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt > 07-09-1672_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv cd $(WORKDIR)/07-09-1672;sed -i "s/^/07-09-1672_pre_ATROPOS_GMM_LABEL3_DISTANCE,/" 07-09-1672_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv job_07-09-1672_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME: cd $(WORKDIR)/07-09-1672;c3d 07-09-1672_pre_ATROPOS_GMM_PHYSICAL_VOLUME.nii.gz 07-09-1672_labels.nii.gz -lstat > 07-09-1672_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/07-09-1672;sed -i "1,2d" 07-09-1672_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/07-09-1672;sed "s/\s\+/,/g" 07-09-1672_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt > 07-09-1672_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv cd $(WORKDIR)/07-09-1672;sed -i "s/^/07-09-1672_pre_ATROPOS_GMM_PHYSICAL_VOLUME,/" 07-09-1672_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv job_07-09-1672_wCSV_pre_ATROPOS_GMM_POSTERIORS1: cd $(WORKDIR)/07-09-1672;c3d 07-09-1672_pre_ATROPOS_GMM_POSTERIORS1.nii.gz 07-09-1672_labels.nii.gz -lstat > 07-09-1672_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/07-09-1672;sed -i "1,2d" 07-09-1672_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/07-09-1672;sed "s/\s\+/,/g" 07-09-1672_pre_ATROPOS_GMM_POSTERIORS1.txt > 07-09-1672_pre_ATROPOS_GMM_POSTERIORS1.csv cd $(WORKDIR)/07-09-1672;sed -i "s/^/07-09-1672_pre_ATROPOS_GMM_POSTERIORS1,/" 07-09-1672_pre_ATROPOS_GMM_POSTERIORS1.csv job_07-09-1672_wCSV_pre_ATROPOS_GMM_POSTERIORS2: cd $(WORKDIR)/07-09-1672;c3d 07-09-1672_pre_ATROPOS_GMM_POSTERIORS2.nii.gz 07-09-1672_labels.nii.gz -lstat > 07-09-1672_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/07-09-1672;sed -i "1,2d" 07-09-1672_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/07-09-1672;sed "s/\s\+/,/g" 07-09-1672_pre_ATROPOS_GMM_POSTERIORS2.txt > 07-09-1672_pre_ATROPOS_GMM_POSTERIORS2.csv cd $(WORKDIR)/07-09-1672;sed -i "s/^/07-09-1672_pre_ATROPOS_GMM_POSTERIORS2,/" 07-09-1672_pre_ATROPOS_GMM_POSTERIORS2.csv job_07-09-1672_wCSV_pre_ATROPOS_GMM_POSTERIORS3: cd $(WORKDIR)/07-09-1672;c3d 07-09-1672_pre_ATROPOS_GMM_POSTERIORS3.nii.gz 07-09-1672_labels.nii.gz -lstat > 07-09-1672_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/07-09-1672;sed -i "1,2d" 07-09-1672_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/07-09-1672;sed "s/\s\+/,/g" 07-09-1672_pre_ATROPOS_GMM_POSTERIORS3.txt > 07-09-1672_pre_ATROPOS_GMM_POSTERIORS3.csv cd $(WORKDIR)/07-09-1672;sed -i "s/^/07-09-1672_pre_ATROPOS_GMM_POSTERIORS3,/" 07-09-1672_pre_ATROPOS_GMM_POSTERIORS3.csv job_07-09-1672_wCSV_pre_ATROPOS_GMM_POSTERIORS4: cd $(WORKDIR)/07-09-1672;c3d 07-09-1672_pre_ATROPOS_GMM_POSTERIORS4.nii.gz 07-09-1672_labels.nii.gz -lstat > 07-09-1672_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/07-09-1672;sed -i "1,2d" 07-09-1672_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/07-09-1672;sed "s/\s\+/,/g" 07-09-1672_pre_ATROPOS_GMM_POSTERIORS4.txt > 07-09-1672_pre_ATROPOS_GMM_POSTERIORS4.csv cd $(WORKDIR)/07-09-1672;sed -i "s/^/07-09-1672_pre_ATROPOS_GMM_POSTERIORS4,/" 07-09-1672_pre_ATROPOS_GMM_POSTERIORS4.csv job_07-09-1672_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO: cd $(WORKDIR)/07-09-1672;c3d 07-09-1672_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.nii.gz 07-09-1672_labels.nii.gz -lstat > 07-09-1672_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/07-09-1672;sed -i "1,2d" 07-09-1672_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/07-09-1672;sed "s/\s\+/,/g" 07-09-1672_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt > 07-09-1672_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv cd $(WORKDIR)/07-09-1672;sed -i "s/^/07-09-1672_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO,/" 07-09-1672_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv job_07-09-1672_wCSV_pre_ENTROPY_RADIUS_1: cd $(WORKDIR)/07-09-1672;c3d 07-09-1672_pre_ENTROPY_RADIUS_1.nii.gz 07-09-1672_labels.nii.gz -lstat > 07-09-1672_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/07-09-1672;sed -i "1,2d" 07-09-1672_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/07-09-1672;sed "s/\s\+/,/g" 07-09-1672_pre_ENTROPY_RADIUS_1.txt > 07-09-1672_pre_ENTROPY_RADIUS_1.csv cd $(WORKDIR)/07-09-1672;sed -i "s/^/07-09-1672_pre_ENTROPY_RADIUS_1,/" 07-09-1672_pre_ENTROPY_RADIUS_1.csv job_07-09-1672_wCSV_pre_ENTROPY_RADIUS_3: cd $(WORKDIR)/07-09-1672;c3d 07-09-1672_pre_ENTROPY_RADIUS_3.nii.gz 07-09-1672_labels.nii.gz -lstat > 07-09-1672_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/07-09-1672;sed -i "1,2d" 07-09-1672_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/07-09-1672;sed "s/\s\+/,/g" 07-09-1672_pre_ENTROPY_RADIUS_3.txt > 07-09-1672_pre_ENTROPY_RADIUS_3.csv cd $(WORKDIR)/07-09-1672;sed -i "s/^/07-09-1672_pre_ENTROPY_RADIUS_3,/" 07-09-1672_pre_ENTROPY_RADIUS_3.csv job_07-09-1672_wCSV_pre_MEAN_RADIUS_1: cd $(WORKDIR)/07-09-1672;c3d 07-09-1672_pre_MEAN_RADIUS_1.nii.gz 07-09-1672_labels.nii.gz -lstat > 07-09-1672_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/07-09-1672;sed -i "1,2d" 07-09-1672_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/07-09-1672;sed "s/\s\+/,/g" 07-09-1672_pre_MEAN_RADIUS_1.txt > 07-09-1672_pre_MEAN_RADIUS_1.csv cd $(WORKDIR)/07-09-1672;sed -i "s/^/07-09-1672_pre_MEAN_RADIUS_1,/" 07-09-1672_pre_MEAN_RADIUS_1.csv job_07-09-1672_wCSV_pre_MEAN_RADIUS_3: cd $(WORKDIR)/07-09-1672;c3d 07-09-1672_pre_MEAN_RADIUS_3.nii.gz 07-09-1672_labels.nii.gz -lstat > 07-09-1672_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/07-09-1672;sed -i "1,2d" 07-09-1672_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/07-09-1672;sed "s/\s\+/,/g" 07-09-1672_pre_MEAN_RADIUS_3.txt > 07-09-1672_pre_MEAN_RADIUS_3.csv cd $(WORKDIR)/07-09-1672;sed -i "s/^/07-09-1672_pre_MEAN_RADIUS_3,/" 07-09-1672_pre_MEAN_RADIUS_3.csv job_07-09-1672_wCSV_pre_NORMALIZED: cd $(WORKDIR)/07-09-1672;c3d 07-09-1672_pre_NORMALIZED.nii.gz 07-09-1672_labels.nii.gz -lstat > 07-09-1672_pre_NORMALIZED.txt cd $(WORKDIR)/07-09-1672;sed -i "1,2d" 07-09-1672_pre_NORMALIZED.txt cd $(WORKDIR)/07-09-1672;sed "s/\s\+/,/g" 07-09-1672_pre_NORMALIZED.txt > 07-09-1672_pre_NORMALIZED.csv cd $(WORKDIR)/07-09-1672;sed -i "s/^/07-09-1672_pre_NORMALIZED,/" 07-09-1672_pre_NORMALIZED.csv job_07-09-1672_wCSV_pre_SIGMA_RADIUS_1: cd $(WORKDIR)/07-09-1672;c3d 07-09-1672_pre_SIGMA_RADIUS_1.nii.gz 07-09-1672_labels.nii.gz -lstat > 07-09-1672_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/07-09-1672;sed -i "1,2d" 07-09-1672_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/07-09-1672;sed "s/\s\+/,/g" 07-09-1672_pre_SIGMA_RADIUS_1.txt > 07-09-1672_pre_SIGMA_RADIUS_1.csv cd $(WORKDIR)/07-09-1672;sed -i "s/^/07-09-1672_pre_SIGMA_RADIUS_1,/" 07-09-1672_pre_SIGMA_RADIUS_1.csv job_07-09-1672_wCSV_pre_SIGMA_RADIUS_3: cd $(WORKDIR)/07-09-1672;c3d 07-09-1672_pre_SIGMA_RADIUS_3.nii.gz 07-09-1672_labels.nii.gz -lstat > 07-09-1672_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/07-09-1672;sed -i "1,2d" 07-09-1672_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/07-09-1672;sed "s/\s\+/,/g" 07-09-1672_pre_SIGMA_RADIUS_3.txt > 07-09-1672_pre_SIGMA_RADIUS_3.csv cd $(WORKDIR)/07-09-1672;sed -i "s/^/07-09-1672_pre_SIGMA_RADIUS_3,/" 07-09-1672_pre_SIGMA_RADIUS_3.csv job_07-09-1672_wCSV_pre_SKEWNESS_RADIUS_1: cd $(WORKDIR)/07-09-1672;c3d 07-09-1672_pre_SKEWNESS_RADIUS_1.nii.gz 07-09-1672_labels.nii.gz -lstat > 07-09-1672_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/07-09-1672;sed -i "1,2d" 07-09-1672_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/07-09-1672;sed "s/\s\+/,/g" 07-09-1672_pre_SKEWNESS_RADIUS_1.txt > 07-09-1672_pre_SKEWNESS_RADIUS_1.csv cd $(WORKDIR)/07-09-1672;sed -i "s/^/07-09-1672_pre_SKEWNESS_RADIUS_1,/" 07-09-1672_pre_SKEWNESS_RADIUS_1.csv job_07-09-1672_wCSV_pre_SKEWNESS_RADIUS_3: cd $(WORKDIR)/07-09-1672;c3d 07-09-1672_pre_SKEWNESS_RADIUS_3.nii.gz 07-09-1672_labels.nii.gz -lstat > 07-09-1672_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/07-09-1672;sed -i "1,2d" 07-09-1672_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/07-09-1672;sed "s/\s\+/,/g" 07-09-1672_pre_SKEWNESS_RADIUS_3.txt > 07-09-1672_pre_SKEWNESS_RADIUS_3.csv cd $(WORKDIR)/07-09-1672;sed -i "s/^/07-09-1672_pre_SKEWNESS_RADIUS_3,/" 07-09-1672_pre_SKEWNESS_RADIUS_3.csv job_07-09-1672_wCSV_pre__DIFFERENCE: cd $(WORKDIR)/07-09-1672;c3d 07-09-1672_pre__DIFFERENCE.nii.gz 07-09-1672_labels.nii.gz -lstat > 07-09-1672_pre__DIFFERENCE.txt cd $(WORKDIR)/07-09-1672;sed -i "1,2d" 07-09-1672_pre__DIFFERENCE.txt cd $(WORKDIR)/07-09-1672;sed "s/\s\+/,/g" 07-09-1672_pre__DIFFERENCE.txt > 07-09-1672_pre__DIFFERENCE.csv cd $(WORKDIR)/07-09-1672;sed -i "s/^/07-09-1672_pre__DIFFERENCE,/" 07-09-1672_pre__DIFFERENCE.csv job_08-09-1673_crFI: cd $(WORKDIR)/08-09-1673;c3d 08-09-1673_grey.nii.gz 08-09-1673_labels.nii.gz -copy-transform -o 08-09-1673_labels.nii.gz cd $(WORKDIR)/08-09-1673;c3d 08-09-1673_grey.nii.gz -orient RAI -o 08-09-1673_grey.nii.gz cd $(WORKDIR)/08-09-1673;c3d 08-09-1673_labels.nii.gz -orient RAI -o 08-09-1673_labels.nii.gz cd $(WORKDIR)/08-09-1673;c3d 08-09-1673_labels.nii.gz -binarize -o 08-09-1673_mask.nii.gz cd $(WORKDIR)/08-09-1673;../createFeatureImagesOvary.sh -d 3 -x 08-09-1673_mask.nii.gz -l3 -n pre -a 08-09-1673_grey.nii.gz -f 0x2 -o ./08-09-1673_ -r 1 -r 3 -s 2 -b 4 job_08-09-1673_wCSV_NORMALIZED_DISTANCE: cd $(WORKDIR)/08-09-1673;c3d 08-09-1673_NORMALIZED_DISTANCE.nii.gz 08-09-1673_labels.nii.gz -lstat > 08-09-1673_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/08-09-1673;sed -i "1,2d" 08-09-1673_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/08-09-1673;sed "s/\s\+/,/g" 08-09-1673_NORMALIZED_DISTANCE.txt > 08-09-1673_NORMALIZED_DISTANCE.csv cd $(WORKDIR)/08-09-1673;sed -i "s/^/08-09-1673_NORMALIZED_DISTANCE,/" 08-09-1673_NORMALIZED_DISTANCE.csv job_08-09-1673_wCSV_pre_ATROPOS_GMM: cd $(WORKDIR)/08-09-1673;c3d 08-09-1673_pre_ATROPOS_GMM.nii.gz 08-09-1673_labels.nii.gz -lstat > 08-09-1673_pre_ATROPOS_GMM.txt cd $(WORKDIR)/08-09-1673;sed -i "1,2d" 08-09-1673_pre_ATROPOS_GMM.txt cd $(WORKDIR)/08-09-1673;sed "s/\s\+/,/g" 08-09-1673_pre_ATROPOS_GMM.txt > 08-09-1673_pre_ATROPOS_GMM.csv cd $(WORKDIR)/08-09-1673;sed -i "s/^/08-09-1673_pre_ATROPOS_GMM,/" 08-09-1673_pre_ATROPOS_GMM.csv job_08-09-1673_wCSV_pre_ATROPOS_GMM_ECCENTRICITY: cd $(WORKDIR)/08-09-1673;c3d 08-09-1673_pre_ATROPOS_GMM_ECCENTRICITY.nii.gz 08-09-1673_labels.nii.gz -lstat > 08-09-1673_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/08-09-1673;sed -i "1,2d" 08-09-1673_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/08-09-1673;sed "s/\s\+/,/g" 08-09-1673_pre_ATROPOS_GMM_ECCENTRICITY.txt > 08-09-1673_pre_ATROPOS_GMM_ECCENTRICITY.csv cd $(WORKDIR)/08-09-1673;sed -i "s/^/08-09-1673_pre_ATROPOS_GMM_ECCENTRICITY,/" 08-09-1673_pre_ATROPOS_GMM_ECCENTRICITY.csv job_08-09-1673_wCSV_pre_ATROPOS_GMM_ELONGATION: cd $(WORKDIR)/08-09-1673;c3d 08-09-1673_pre_ATROPOS_GMM_ELONGATION.nii.gz 08-09-1673_labels.nii.gz -lstat > 08-09-1673_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/08-09-1673;sed -i "1,2d" 08-09-1673_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/08-09-1673;sed "s/\s\+/,/g" 08-09-1673_pre_ATROPOS_GMM_ELONGATION.txt > 08-09-1673_pre_ATROPOS_GMM_ELONGATION.csv cd $(WORKDIR)/08-09-1673;sed -i "s/^/08-09-1673_pre_ATROPOS_GMM_ELONGATION,/" 08-09-1673_pre_ATROPOS_GMM_ELONGATION.csv job_08-09-1673_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE: cd $(WORKDIR)/08-09-1673;c3d 08-09-1673_pre_ATROPOS_GMM_LABEL3_DISTANCE.nii.gz 08-09-1673_labels.nii.gz -lstat > 08-09-1673_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/08-09-1673;sed -i "1,2d" 08-09-1673_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/08-09-1673;sed "s/\s\+/,/g" 08-09-1673_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt > 08-09-1673_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv cd $(WORKDIR)/08-09-1673;sed -i "s/^/08-09-1673_pre_ATROPOS_GMM_LABEL3_DISTANCE,/" 08-09-1673_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv job_08-09-1673_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME: cd $(WORKDIR)/08-09-1673;c3d 08-09-1673_pre_ATROPOS_GMM_PHYSICAL_VOLUME.nii.gz 08-09-1673_labels.nii.gz -lstat > 08-09-1673_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/08-09-1673;sed -i "1,2d" 08-09-1673_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/08-09-1673;sed "s/\s\+/,/g" 08-09-1673_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt > 08-09-1673_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv cd $(WORKDIR)/08-09-1673;sed -i "s/^/08-09-1673_pre_ATROPOS_GMM_PHYSICAL_VOLUME,/" 08-09-1673_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv job_08-09-1673_wCSV_pre_ATROPOS_GMM_POSTERIORS1: cd $(WORKDIR)/08-09-1673;c3d 08-09-1673_pre_ATROPOS_GMM_POSTERIORS1.nii.gz 08-09-1673_labels.nii.gz -lstat > 08-09-1673_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/08-09-1673;sed -i "1,2d" 08-09-1673_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/08-09-1673;sed "s/\s\+/,/g" 08-09-1673_pre_ATROPOS_GMM_POSTERIORS1.txt > 08-09-1673_pre_ATROPOS_GMM_POSTERIORS1.csv cd $(WORKDIR)/08-09-1673;sed -i "s/^/08-09-1673_pre_ATROPOS_GMM_POSTERIORS1,/" 08-09-1673_pre_ATROPOS_GMM_POSTERIORS1.csv job_08-09-1673_wCSV_pre_ATROPOS_GMM_POSTERIORS2: cd $(WORKDIR)/08-09-1673;c3d 08-09-1673_pre_ATROPOS_GMM_POSTERIORS2.nii.gz 08-09-1673_labels.nii.gz -lstat > 08-09-1673_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/08-09-1673;sed -i "1,2d" 08-09-1673_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/08-09-1673;sed "s/\s\+/,/g" 08-09-1673_pre_ATROPOS_GMM_POSTERIORS2.txt > 08-09-1673_pre_ATROPOS_GMM_POSTERIORS2.csv cd $(WORKDIR)/08-09-1673;sed -i "s/^/08-09-1673_pre_ATROPOS_GMM_POSTERIORS2,/" 08-09-1673_pre_ATROPOS_GMM_POSTERIORS2.csv job_08-09-1673_wCSV_pre_ATROPOS_GMM_POSTERIORS3: cd $(WORKDIR)/08-09-1673;c3d 08-09-1673_pre_ATROPOS_GMM_POSTERIORS3.nii.gz 08-09-1673_labels.nii.gz -lstat > 08-09-1673_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/08-09-1673;sed -i "1,2d" 08-09-1673_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/08-09-1673;sed "s/\s\+/,/g" 08-09-1673_pre_ATROPOS_GMM_POSTERIORS3.txt > 08-09-1673_pre_ATROPOS_GMM_POSTERIORS3.csv cd $(WORKDIR)/08-09-1673;sed -i "s/^/08-09-1673_pre_ATROPOS_GMM_POSTERIORS3,/" 08-09-1673_pre_ATROPOS_GMM_POSTERIORS3.csv job_08-09-1673_wCSV_pre_ATROPOS_GMM_POSTERIORS4: cd $(WORKDIR)/08-09-1673;c3d 08-09-1673_pre_ATROPOS_GMM_POSTERIORS4.nii.gz 08-09-1673_labels.nii.gz -lstat > 08-09-1673_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/08-09-1673;sed -i "1,2d" 08-09-1673_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/08-09-1673;sed "s/\s\+/,/g" 08-09-1673_pre_ATROPOS_GMM_POSTERIORS4.txt > 08-09-1673_pre_ATROPOS_GMM_POSTERIORS4.csv cd $(WORKDIR)/08-09-1673;sed -i "s/^/08-09-1673_pre_ATROPOS_GMM_POSTERIORS4,/" 08-09-1673_pre_ATROPOS_GMM_POSTERIORS4.csv job_08-09-1673_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO: cd $(WORKDIR)/08-09-1673;c3d 08-09-1673_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.nii.gz 08-09-1673_labels.nii.gz -lstat > 08-09-1673_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/08-09-1673;sed -i "1,2d" 08-09-1673_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/08-09-1673;sed "s/\s\+/,/g" 08-09-1673_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt > 08-09-1673_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv cd $(WORKDIR)/08-09-1673;sed -i "s/^/08-09-1673_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO,/" 08-09-1673_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv job_08-09-1673_wCSV_pre_ENTROPY_RADIUS_1: cd $(WORKDIR)/08-09-1673;c3d 08-09-1673_pre_ENTROPY_RADIUS_1.nii.gz 08-09-1673_labels.nii.gz -lstat > 08-09-1673_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/08-09-1673;sed -i "1,2d" 08-09-1673_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/08-09-1673;sed "s/\s\+/,/g" 08-09-1673_pre_ENTROPY_RADIUS_1.txt > 08-09-1673_pre_ENTROPY_RADIUS_1.csv cd $(WORKDIR)/08-09-1673;sed -i "s/^/08-09-1673_pre_ENTROPY_RADIUS_1,/" 08-09-1673_pre_ENTROPY_RADIUS_1.csv job_08-09-1673_wCSV_pre_ENTROPY_RADIUS_3: cd $(WORKDIR)/08-09-1673;c3d 08-09-1673_pre_ENTROPY_RADIUS_3.nii.gz 08-09-1673_labels.nii.gz -lstat > 08-09-1673_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/08-09-1673;sed -i "1,2d" 08-09-1673_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/08-09-1673;sed "s/\s\+/,/g" 08-09-1673_pre_ENTROPY_RADIUS_3.txt > 08-09-1673_pre_ENTROPY_RADIUS_3.csv cd $(WORKDIR)/08-09-1673;sed -i "s/^/08-09-1673_pre_ENTROPY_RADIUS_3,/" 08-09-1673_pre_ENTROPY_RADIUS_3.csv job_08-09-1673_wCSV_pre_MEAN_RADIUS_1: cd $(WORKDIR)/08-09-1673;c3d 08-09-1673_pre_MEAN_RADIUS_1.nii.gz 08-09-1673_labels.nii.gz -lstat > 08-09-1673_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/08-09-1673;sed -i "1,2d" 08-09-1673_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/08-09-1673;sed "s/\s\+/,/g" 08-09-1673_pre_MEAN_RADIUS_1.txt > 08-09-1673_pre_MEAN_RADIUS_1.csv cd $(WORKDIR)/08-09-1673;sed -i "s/^/08-09-1673_pre_MEAN_RADIUS_1,/" 08-09-1673_pre_MEAN_RADIUS_1.csv job_08-09-1673_wCSV_pre_MEAN_RADIUS_3: cd $(WORKDIR)/08-09-1673;c3d 08-09-1673_pre_MEAN_RADIUS_3.nii.gz 08-09-1673_labels.nii.gz -lstat > 08-09-1673_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/08-09-1673;sed -i "1,2d" 08-09-1673_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/08-09-1673;sed "s/\s\+/,/g" 08-09-1673_pre_MEAN_RADIUS_3.txt > 08-09-1673_pre_MEAN_RADIUS_3.csv cd $(WORKDIR)/08-09-1673;sed -i "s/^/08-09-1673_pre_MEAN_RADIUS_3,/" 08-09-1673_pre_MEAN_RADIUS_3.csv job_08-09-1673_wCSV_pre_NORMALIZED: cd $(WORKDIR)/08-09-1673;c3d 08-09-1673_pre_NORMALIZED.nii.gz 08-09-1673_labels.nii.gz -lstat > 08-09-1673_pre_NORMALIZED.txt cd $(WORKDIR)/08-09-1673;sed -i "1,2d" 08-09-1673_pre_NORMALIZED.txt cd $(WORKDIR)/08-09-1673;sed "s/\s\+/,/g" 08-09-1673_pre_NORMALIZED.txt > 08-09-1673_pre_NORMALIZED.csv cd $(WORKDIR)/08-09-1673;sed -i "s/^/08-09-1673_pre_NORMALIZED,/" 08-09-1673_pre_NORMALIZED.csv job_08-09-1673_wCSV_pre_SIGMA_RADIUS_1: cd $(WORKDIR)/08-09-1673;c3d 08-09-1673_pre_SIGMA_RADIUS_1.nii.gz 08-09-1673_labels.nii.gz -lstat > 08-09-1673_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/08-09-1673;sed -i "1,2d" 08-09-1673_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/08-09-1673;sed "s/\s\+/,/g" 08-09-1673_pre_SIGMA_RADIUS_1.txt > 08-09-1673_pre_SIGMA_RADIUS_1.csv cd $(WORKDIR)/08-09-1673;sed -i "s/^/08-09-1673_pre_SIGMA_RADIUS_1,/" 08-09-1673_pre_SIGMA_RADIUS_1.csv job_08-09-1673_wCSV_pre_SIGMA_RADIUS_3: cd $(WORKDIR)/08-09-1673;c3d 08-09-1673_pre_SIGMA_RADIUS_3.nii.gz 08-09-1673_labels.nii.gz -lstat > 08-09-1673_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/08-09-1673;sed -i "1,2d" 08-09-1673_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/08-09-1673;sed "s/\s\+/,/g" 08-09-1673_pre_SIGMA_RADIUS_3.txt > 08-09-1673_pre_SIGMA_RADIUS_3.csv cd $(WORKDIR)/08-09-1673;sed -i "s/^/08-09-1673_pre_SIGMA_RADIUS_3,/" 08-09-1673_pre_SIGMA_RADIUS_3.csv job_08-09-1673_wCSV_pre_SKEWNESS_RADIUS_1: cd $(WORKDIR)/08-09-1673;c3d 08-09-1673_pre_SKEWNESS_RADIUS_1.nii.gz 08-09-1673_labels.nii.gz -lstat > 08-09-1673_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/08-09-1673;sed -i "1,2d" 08-09-1673_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/08-09-1673;sed "s/\s\+/,/g" 08-09-1673_pre_SKEWNESS_RADIUS_1.txt > 08-09-1673_pre_SKEWNESS_RADIUS_1.csv cd $(WORKDIR)/08-09-1673;sed -i "s/^/08-09-1673_pre_SKEWNESS_RADIUS_1,/" 08-09-1673_pre_SKEWNESS_RADIUS_1.csv job_08-09-1673_wCSV_pre_SKEWNESS_RADIUS_3: cd $(WORKDIR)/08-09-1673;c3d 08-09-1673_pre_SKEWNESS_RADIUS_3.nii.gz 08-09-1673_labels.nii.gz -lstat > 08-09-1673_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/08-09-1673;sed -i "1,2d" 08-09-1673_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/08-09-1673;sed "s/\s\+/,/g" 08-09-1673_pre_SKEWNESS_RADIUS_3.txt > 08-09-1673_pre_SKEWNESS_RADIUS_3.csv cd $(WORKDIR)/08-09-1673;sed -i "s/^/08-09-1673_pre_SKEWNESS_RADIUS_3,/" 08-09-1673_pre_SKEWNESS_RADIUS_3.csv job_08-09-1673_wCSV_pre__DIFFERENCE: cd $(WORKDIR)/08-09-1673;c3d 08-09-1673_pre__DIFFERENCE.nii.gz 08-09-1673_labels.nii.gz -lstat > 08-09-1673_pre__DIFFERENCE.txt cd $(WORKDIR)/08-09-1673;sed -i "1,2d" 08-09-1673_pre__DIFFERENCE.txt cd $(WORKDIR)/08-09-1673;sed "s/\s\+/,/g" 08-09-1673_pre__DIFFERENCE.txt > 08-09-1673_pre__DIFFERENCE.csv cd $(WORKDIR)/08-09-1673;sed -i "s/^/08-09-1673_pre__DIFFERENCE,/" 08-09-1673_pre__DIFFERENCE.csv job_09-09-1674_crFI: cd $(WORKDIR)/09-09-1674;c3d 09-09-1674_grey.nii.gz 09-09-1674_labels.nii.gz -copy-transform -o 09-09-1674_labels.nii.gz cd $(WORKDIR)/09-09-1674;c3d 09-09-1674_grey.nii.gz -orient RAI -o 09-09-1674_grey.nii.gz cd $(WORKDIR)/09-09-1674;c3d 09-09-1674_labels.nii.gz -orient RAI -o 09-09-1674_labels.nii.gz cd $(WORKDIR)/09-09-1674;c3d 09-09-1674_labels.nii.gz -binarize -o 09-09-1674_mask.nii.gz cd $(WORKDIR)/09-09-1674;../createFeatureImagesOvary.sh -d 3 -x 09-09-1674_mask.nii.gz -l3 -n pre -a 09-09-1674_grey.nii.gz -f 0x2 -o ./09-09-1674_ -r 1 -r 3 -s 2 -b 4 job_09-09-1674_wCSV_NORMALIZED_DISTANCE: cd $(WORKDIR)/09-09-1674;c3d 09-09-1674_NORMALIZED_DISTANCE.nii.gz 09-09-1674_labels.nii.gz -lstat > 09-09-1674_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/09-09-1674;sed -i "1,2d" 09-09-1674_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/09-09-1674;sed "s/\s\+/,/g" 09-09-1674_NORMALIZED_DISTANCE.txt > 09-09-1674_NORMALIZED_DISTANCE.csv cd $(WORKDIR)/09-09-1674;sed -i "s/^/09-09-1674_NORMALIZED_DISTANCE,/" 09-09-1674_NORMALIZED_DISTANCE.csv job_09-09-1674_wCSV_pre_ATROPOS_GMM: cd $(WORKDIR)/09-09-1674;c3d 09-09-1674_pre_ATROPOS_GMM.nii.gz 09-09-1674_labels.nii.gz -lstat > 09-09-1674_pre_ATROPOS_GMM.txt cd $(WORKDIR)/09-09-1674;sed -i "1,2d" 09-09-1674_pre_ATROPOS_GMM.txt cd $(WORKDIR)/09-09-1674;sed "s/\s\+/,/g" 09-09-1674_pre_ATROPOS_GMM.txt > 09-09-1674_pre_ATROPOS_GMM.csv cd $(WORKDIR)/09-09-1674;sed -i "s/^/09-09-1674_pre_ATROPOS_GMM,/" 09-09-1674_pre_ATROPOS_GMM.csv job_09-09-1674_wCSV_pre_ATROPOS_GMM_ECCENTRICITY: cd $(WORKDIR)/09-09-1674;c3d 09-09-1674_pre_ATROPOS_GMM_ECCENTRICITY.nii.gz 09-09-1674_labels.nii.gz -lstat > 09-09-1674_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/09-09-1674;sed -i "1,2d" 09-09-1674_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/09-09-1674;sed "s/\s\+/,/g" 09-09-1674_pre_ATROPOS_GMM_ECCENTRICITY.txt > 09-09-1674_pre_ATROPOS_GMM_ECCENTRICITY.csv cd $(WORKDIR)/09-09-1674;sed -i "s/^/09-09-1674_pre_ATROPOS_GMM_ECCENTRICITY,/" 09-09-1674_pre_ATROPOS_GMM_ECCENTRICITY.csv job_09-09-1674_wCSV_pre_ATROPOS_GMM_ELONGATION: cd $(WORKDIR)/09-09-1674;c3d 09-09-1674_pre_ATROPOS_GMM_ELONGATION.nii.gz 09-09-1674_labels.nii.gz -lstat > 09-09-1674_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/09-09-1674;sed -i "1,2d" 09-09-1674_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/09-09-1674;sed "s/\s\+/,/g" 09-09-1674_pre_ATROPOS_GMM_ELONGATION.txt > 09-09-1674_pre_ATROPOS_GMM_ELONGATION.csv cd $(WORKDIR)/09-09-1674;sed -i "s/^/09-09-1674_pre_ATROPOS_GMM_ELONGATION,/" 09-09-1674_pre_ATROPOS_GMM_ELONGATION.csv job_09-09-1674_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE: cd $(WORKDIR)/09-09-1674;c3d 09-09-1674_pre_ATROPOS_GMM_LABEL3_DISTANCE.nii.gz 09-09-1674_labels.nii.gz -lstat > 09-09-1674_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/09-09-1674;sed -i "1,2d" 09-09-1674_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/09-09-1674;sed "s/\s\+/,/g" 09-09-1674_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt > 09-09-1674_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv cd $(WORKDIR)/09-09-1674;sed -i "s/^/09-09-1674_pre_ATROPOS_GMM_LABEL3_DISTANCE,/" 09-09-1674_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv job_09-09-1674_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME: cd $(WORKDIR)/09-09-1674;c3d 09-09-1674_pre_ATROPOS_GMM_PHYSICAL_VOLUME.nii.gz 09-09-1674_labels.nii.gz -lstat > 09-09-1674_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/09-09-1674;sed -i "1,2d" 09-09-1674_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/09-09-1674;sed "s/\s\+/,/g" 09-09-1674_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt > 09-09-1674_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv cd $(WORKDIR)/09-09-1674;sed -i "s/^/09-09-1674_pre_ATROPOS_GMM_PHYSICAL_VOLUME,/" 09-09-1674_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv job_09-09-1674_wCSV_pre_ATROPOS_GMM_POSTERIORS1: cd $(WORKDIR)/09-09-1674;c3d 09-09-1674_pre_ATROPOS_GMM_POSTERIORS1.nii.gz 09-09-1674_labels.nii.gz -lstat > 09-09-1674_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/09-09-1674;sed -i "1,2d" 09-09-1674_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/09-09-1674;sed "s/\s\+/,/g" 09-09-1674_pre_ATROPOS_GMM_POSTERIORS1.txt > 09-09-1674_pre_ATROPOS_GMM_POSTERIORS1.csv cd $(WORKDIR)/09-09-1674;sed -i "s/^/09-09-1674_pre_ATROPOS_GMM_POSTERIORS1,/" 09-09-1674_pre_ATROPOS_GMM_POSTERIORS1.csv job_09-09-1674_wCSV_pre_ATROPOS_GMM_POSTERIORS2: cd $(WORKDIR)/09-09-1674;c3d 09-09-1674_pre_ATROPOS_GMM_POSTERIORS2.nii.gz 09-09-1674_labels.nii.gz -lstat > 09-09-1674_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/09-09-1674;sed -i "1,2d" 09-09-1674_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/09-09-1674;sed "s/\s\+/,/g" 09-09-1674_pre_ATROPOS_GMM_POSTERIORS2.txt > 09-09-1674_pre_ATROPOS_GMM_POSTERIORS2.csv cd $(WORKDIR)/09-09-1674;sed -i "s/^/09-09-1674_pre_ATROPOS_GMM_POSTERIORS2,/" 09-09-1674_pre_ATROPOS_GMM_POSTERIORS2.csv job_09-09-1674_wCSV_pre_ATROPOS_GMM_POSTERIORS3: cd $(WORKDIR)/09-09-1674;c3d 09-09-1674_pre_ATROPOS_GMM_POSTERIORS3.nii.gz 09-09-1674_labels.nii.gz -lstat > 09-09-1674_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/09-09-1674;sed -i "1,2d" 09-09-1674_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/09-09-1674;sed "s/\s\+/,/g" 09-09-1674_pre_ATROPOS_GMM_POSTERIORS3.txt > 09-09-1674_pre_ATROPOS_GMM_POSTERIORS3.csv cd $(WORKDIR)/09-09-1674;sed -i "s/^/09-09-1674_pre_ATROPOS_GMM_POSTERIORS3,/" 09-09-1674_pre_ATROPOS_GMM_POSTERIORS3.csv job_09-09-1674_wCSV_pre_ATROPOS_GMM_POSTERIORS4: cd $(WORKDIR)/09-09-1674;c3d 09-09-1674_pre_ATROPOS_GMM_POSTERIORS4.nii.gz 09-09-1674_labels.nii.gz -lstat > 09-09-1674_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/09-09-1674;sed -i "1,2d" 09-09-1674_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/09-09-1674;sed "s/\s\+/,/g" 09-09-1674_pre_ATROPOS_GMM_POSTERIORS4.txt > 09-09-1674_pre_ATROPOS_GMM_POSTERIORS4.csv cd $(WORKDIR)/09-09-1674;sed -i "s/^/09-09-1674_pre_ATROPOS_GMM_POSTERIORS4,/" 09-09-1674_pre_ATROPOS_GMM_POSTERIORS4.csv job_09-09-1674_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO: cd $(WORKDIR)/09-09-1674;c3d 09-09-1674_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.nii.gz 09-09-1674_labels.nii.gz -lstat > 09-09-1674_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/09-09-1674;sed -i "1,2d" 09-09-1674_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/09-09-1674;sed "s/\s\+/,/g" 09-09-1674_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt > 09-09-1674_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv cd $(WORKDIR)/09-09-1674;sed -i "s/^/09-09-1674_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO,/" 09-09-1674_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv job_09-09-1674_wCSV_pre_ENTROPY_RADIUS_1: cd $(WORKDIR)/09-09-1674;c3d 09-09-1674_pre_ENTROPY_RADIUS_1.nii.gz 09-09-1674_labels.nii.gz -lstat > 09-09-1674_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/09-09-1674;sed -i "1,2d" 09-09-1674_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/09-09-1674;sed "s/\s\+/,/g" 09-09-1674_pre_ENTROPY_RADIUS_1.txt > 09-09-1674_pre_ENTROPY_RADIUS_1.csv cd $(WORKDIR)/09-09-1674;sed -i "s/^/09-09-1674_pre_ENTROPY_RADIUS_1,/" 09-09-1674_pre_ENTROPY_RADIUS_1.csv job_09-09-1674_wCSV_pre_ENTROPY_RADIUS_3: cd $(WORKDIR)/09-09-1674;c3d 09-09-1674_pre_ENTROPY_RADIUS_3.nii.gz 09-09-1674_labels.nii.gz -lstat > 09-09-1674_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/09-09-1674;sed -i "1,2d" 09-09-1674_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/09-09-1674;sed "s/\s\+/,/g" 09-09-1674_pre_ENTROPY_RADIUS_3.txt > 09-09-1674_pre_ENTROPY_RADIUS_3.csv cd $(WORKDIR)/09-09-1674;sed -i "s/^/09-09-1674_pre_ENTROPY_RADIUS_3,/" 09-09-1674_pre_ENTROPY_RADIUS_3.csv job_09-09-1674_wCSV_pre_MEAN_RADIUS_1: cd $(WORKDIR)/09-09-1674;c3d 09-09-1674_pre_MEAN_RADIUS_1.nii.gz 09-09-1674_labels.nii.gz -lstat > 09-09-1674_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/09-09-1674;sed -i "1,2d" 09-09-1674_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/09-09-1674;sed "s/\s\+/,/g" 09-09-1674_pre_MEAN_RADIUS_1.txt > 09-09-1674_pre_MEAN_RADIUS_1.csv cd $(WORKDIR)/09-09-1674;sed -i "s/^/09-09-1674_pre_MEAN_RADIUS_1,/" 09-09-1674_pre_MEAN_RADIUS_1.csv job_09-09-1674_wCSV_pre_MEAN_RADIUS_3: cd $(WORKDIR)/09-09-1674;c3d 09-09-1674_pre_MEAN_RADIUS_3.nii.gz 09-09-1674_labels.nii.gz -lstat > 09-09-1674_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/09-09-1674;sed -i "1,2d" 09-09-1674_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/09-09-1674;sed "s/\s\+/,/g" 09-09-1674_pre_MEAN_RADIUS_3.txt > 09-09-1674_pre_MEAN_RADIUS_3.csv cd $(WORKDIR)/09-09-1674;sed -i "s/^/09-09-1674_pre_MEAN_RADIUS_3,/" 09-09-1674_pre_MEAN_RADIUS_3.csv job_09-09-1674_wCSV_pre_NORMALIZED: cd $(WORKDIR)/09-09-1674;c3d 09-09-1674_pre_NORMALIZED.nii.gz 09-09-1674_labels.nii.gz -lstat > 09-09-1674_pre_NORMALIZED.txt cd $(WORKDIR)/09-09-1674;sed -i "1,2d" 09-09-1674_pre_NORMALIZED.txt cd $(WORKDIR)/09-09-1674;sed "s/\s\+/,/g" 09-09-1674_pre_NORMALIZED.txt > 09-09-1674_pre_NORMALIZED.csv cd $(WORKDIR)/09-09-1674;sed -i "s/^/09-09-1674_pre_NORMALIZED,/" 09-09-1674_pre_NORMALIZED.csv job_09-09-1674_wCSV_pre_SIGMA_RADIUS_1: cd $(WORKDIR)/09-09-1674;c3d 09-09-1674_pre_SIGMA_RADIUS_1.nii.gz 09-09-1674_labels.nii.gz -lstat > 09-09-1674_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/09-09-1674;sed -i "1,2d" 09-09-1674_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/09-09-1674;sed "s/\s\+/,/g" 09-09-1674_pre_SIGMA_RADIUS_1.txt > 09-09-1674_pre_SIGMA_RADIUS_1.csv cd $(WORKDIR)/09-09-1674;sed -i "s/^/09-09-1674_pre_SIGMA_RADIUS_1,/" 09-09-1674_pre_SIGMA_RADIUS_1.csv job_09-09-1674_wCSV_pre_SIGMA_RADIUS_3: cd $(WORKDIR)/09-09-1674;c3d 09-09-1674_pre_SIGMA_RADIUS_3.nii.gz 09-09-1674_labels.nii.gz -lstat > 09-09-1674_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/09-09-1674;sed -i "1,2d" 09-09-1674_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/09-09-1674;sed "s/\s\+/,/g" 09-09-1674_pre_SIGMA_RADIUS_3.txt > 09-09-1674_pre_SIGMA_RADIUS_3.csv cd $(WORKDIR)/09-09-1674;sed -i "s/^/09-09-1674_pre_SIGMA_RADIUS_3,/" 09-09-1674_pre_SIGMA_RADIUS_3.csv job_09-09-1674_wCSV_pre_SKEWNESS_RADIUS_1: cd $(WORKDIR)/09-09-1674;c3d 09-09-1674_pre_SKEWNESS_RADIUS_1.nii.gz 09-09-1674_labels.nii.gz -lstat > 09-09-1674_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/09-09-1674;sed -i "1,2d" 09-09-1674_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/09-09-1674;sed "s/\s\+/,/g" 09-09-1674_pre_SKEWNESS_RADIUS_1.txt > 09-09-1674_pre_SKEWNESS_RADIUS_1.csv cd $(WORKDIR)/09-09-1674;sed -i "s/^/09-09-1674_pre_SKEWNESS_RADIUS_1,/" 09-09-1674_pre_SKEWNESS_RADIUS_1.csv job_09-09-1674_wCSV_pre_SKEWNESS_RADIUS_3: cd $(WORKDIR)/09-09-1674;c3d 09-09-1674_pre_SKEWNESS_RADIUS_3.nii.gz 09-09-1674_labels.nii.gz -lstat > 09-09-1674_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/09-09-1674;sed -i "1,2d" 09-09-1674_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/09-09-1674;sed "s/\s\+/,/g" 09-09-1674_pre_SKEWNESS_RADIUS_3.txt > 09-09-1674_pre_SKEWNESS_RADIUS_3.csv cd $(WORKDIR)/09-09-1674;sed -i "s/^/09-09-1674_pre_SKEWNESS_RADIUS_3,/" 09-09-1674_pre_SKEWNESS_RADIUS_3.csv job_09-09-1674_wCSV_pre__DIFFERENCE: cd $(WORKDIR)/09-09-1674;c3d 09-09-1674_pre__DIFFERENCE.nii.gz 09-09-1674_labels.nii.gz -lstat > 09-09-1674_pre__DIFFERENCE.txt cd $(WORKDIR)/09-09-1674;sed -i "1,2d" 09-09-1674_pre__DIFFERENCE.txt cd $(WORKDIR)/09-09-1674;sed "s/\s\+/,/g" 09-09-1674_pre__DIFFERENCE.txt > 09-09-1674_pre__DIFFERENCE.csv cd $(WORKDIR)/09-09-1674;sed -i "s/^/09-09-1674_pre__DIFFERENCE,/" 09-09-1674_pre__DIFFERENCE.csv job_10-09-1675_crFI: cd $(WORKDIR)/10-09-1675;c3d 10-09-1675_grey.nii.gz 10-09-1675_labels.nii.gz -copy-transform -o 10-09-1675_labels.nii.gz cd $(WORKDIR)/10-09-1675;c3d 10-09-1675_grey.nii.gz -orient RAI -o 10-09-1675_grey.nii.gz cd $(WORKDIR)/10-09-1675;c3d 10-09-1675_labels.nii.gz -orient RAI -o 10-09-1675_labels.nii.gz cd $(WORKDIR)/10-09-1675;c3d 10-09-1675_labels.nii.gz -binarize -o 10-09-1675_mask.nii.gz cd $(WORKDIR)/10-09-1675;../createFeatureImagesOvary.sh -d 3 -x 10-09-1675_mask.nii.gz -l3 -n pre -a 10-09-1675_grey.nii.gz -f 0x2 -o ./10-09-1675_ -r 1 -r 3 -s 2 -b 4 job_10-09-1675_wCSV_NORMALIZED_DISTANCE: cd $(WORKDIR)/10-09-1675;c3d 10-09-1675_NORMALIZED_DISTANCE.nii.gz 10-09-1675_labels.nii.gz -lstat > 10-09-1675_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/10-09-1675;sed -i "1,2d" 10-09-1675_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/10-09-1675;sed "s/\s\+/,/g" 10-09-1675_NORMALIZED_DISTANCE.txt > 10-09-1675_NORMALIZED_DISTANCE.csv cd $(WORKDIR)/10-09-1675;sed -i "s/^/10-09-1675_NORMALIZED_DISTANCE,/" 10-09-1675_NORMALIZED_DISTANCE.csv job_10-09-1675_wCSV_pre_ATROPOS_GMM: cd $(WORKDIR)/10-09-1675;c3d 10-09-1675_pre_ATROPOS_GMM.nii.gz 10-09-1675_labels.nii.gz -lstat > 10-09-1675_pre_ATROPOS_GMM.txt cd $(WORKDIR)/10-09-1675;sed -i "1,2d" 10-09-1675_pre_ATROPOS_GMM.txt cd $(WORKDIR)/10-09-1675;sed "s/\s\+/,/g" 10-09-1675_pre_ATROPOS_GMM.txt > 10-09-1675_pre_ATROPOS_GMM.csv cd $(WORKDIR)/10-09-1675;sed -i "s/^/10-09-1675_pre_ATROPOS_GMM,/" 10-09-1675_pre_ATROPOS_GMM.csv job_10-09-1675_wCSV_pre_ATROPOS_GMM_ECCENTRICITY: cd $(WORKDIR)/10-09-1675;c3d 10-09-1675_pre_ATROPOS_GMM_ECCENTRICITY.nii.gz 10-09-1675_labels.nii.gz -lstat > 10-09-1675_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/10-09-1675;sed -i "1,2d" 10-09-1675_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/10-09-1675;sed "s/\s\+/,/g" 10-09-1675_pre_ATROPOS_GMM_ECCENTRICITY.txt > 10-09-1675_pre_ATROPOS_GMM_ECCENTRICITY.csv cd $(WORKDIR)/10-09-1675;sed -i "s/^/10-09-1675_pre_ATROPOS_GMM_ECCENTRICITY,/" 10-09-1675_pre_ATROPOS_GMM_ECCENTRICITY.csv job_10-09-1675_wCSV_pre_ATROPOS_GMM_ELONGATION: cd $(WORKDIR)/10-09-1675;c3d 10-09-1675_pre_ATROPOS_GMM_ELONGATION.nii.gz 10-09-1675_labels.nii.gz -lstat > 10-09-1675_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/10-09-1675;sed -i "1,2d" 10-09-1675_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/10-09-1675;sed "s/\s\+/,/g" 10-09-1675_pre_ATROPOS_GMM_ELONGATION.txt > 10-09-1675_pre_ATROPOS_GMM_ELONGATION.csv cd $(WORKDIR)/10-09-1675;sed -i "s/^/10-09-1675_pre_ATROPOS_GMM_ELONGATION,/" 10-09-1675_pre_ATROPOS_GMM_ELONGATION.csv job_10-09-1675_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE: cd $(WORKDIR)/10-09-1675;c3d 10-09-1675_pre_ATROPOS_GMM_LABEL3_DISTANCE.nii.gz 10-09-1675_labels.nii.gz -lstat > 10-09-1675_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/10-09-1675;sed -i "1,2d" 10-09-1675_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/10-09-1675;sed "s/\s\+/,/g" 10-09-1675_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt > 10-09-1675_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv cd $(WORKDIR)/10-09-1675;sed -i "s/^/10-09-1675_pre_ATROPOS_GMM_LABEL3_DISTANCE,/" 10-09-1675_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv job_10-09-1675_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME: cd $(WORKDIR)/10-09-1675;c3d 10-09-1675_pre_ATROPOS_GMM_PHYSICAL_VOLUME.nii.gz 10-09-1675_labels.nii.gz -lstat > 10-09-1675_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/10-09-1675;sed -i "1,2d" 10-09-1675_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/10-09-1675;sed "s/\s\+/,/g" 10-09-1675_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt > 10-09-1675_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv cd $(WORKDIR)/10-09-1675;sed -i "s/^/10-09-1675_pre_ATROPOS_GMM_PHYSICAL_VOLUME,/" 10-09-1675_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv job_10-09-1675_wCSV_pre_ATROPOS_GMM_POSTERIORS1: cd $(WORKDIR)/10-09-1675;c3d 10-09-1675_pre_ATROPOS_GMM_POSTERIORS1.nii.gz 10-09-1675_labels.nii.gz -lstat > 10-09-1675_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/10-09-1675;sed -i "1,2d" 10-09-1675_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/10-09-1675;sed "s/\s\+/,/g" 10-09-1675_pre_ATROPOS_GMM_POSTERIORS1.txt > 10-09-1675_pre_ATROPOS_GMM_POSTERIORS1.csv cd $(WORKDIR)/10-09-1675;sed -i "s/^/10-09-1675_pre_ATROPOS_GMM_POSTERIORS1,/" 10-09-1675_pre_ATROPOS_GMM_POSTERIORS1.csv job_10-09-1675_wCSV_pre_ATROPOS_GMM_POSTERIORS2: cd $(WORKDIR)/10-09-1675;c3d 10-09-1675_pre_ATROPOS_GMM_POSTERIORS2.nii.gz 10-09-1675_labels.nii.gz -lstat > 10-09-1675_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/10-09-1675;sed -i "1,2d" 10-09-1675_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/10-09-1675;sed "s/\s\+/,/g" 10-09-1675_pre_ATROPOS_GMM_POSTERIORS2.txt > 10-09-1675_pre_ATROPOS_GMM_POSTERIORS2.csv cd $(WORKDIR)/10-09-1675;sed -i "s/^/10-09-1675_pre_ATROPOS_GMM_POSTERIORS2,/" 10-09-1675_pre_ATROPOS_GMM_POSTERIORS2.csv job_10-09-1675_wCSV_pre_ATROPOS_GMM_POSTERIORS3: cd $(WORKDIR)/10-09-1675;c3d 10-09-1675_pre_ATROPOS_GMM_POSTERIORS3.nii.gz 10-09-1675_labels.nii.gz -lstat > 10-09-1675_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/10-09-1675;sed -i "1,2d" 10-09-1675_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/10-09-1675;sed "s/\s\+/,/g" 10-09-1675_pre_ATROPOS_GMM_POSTERIORS3.txt > 10-09-1675_pre_ATROPOS_GMM_POSTERIORS3.csv cd $(WORKDIR)/10-09-1675;sed -i "s/^/10-09-1675_pre_ATROPOS_GMM_POSTERIORS3,/" 10-09-1675_pre_ATROPOS_GMM_POSTERIORS3.csv job_10-09-1675_wCSV_pre_ATROPOS_GMM_POSTERIORS4: cd $(WORKDIR)/10-09-1675;c3d 10-09-1675_pre_ATROPOS_GMM_POSTERIORS4.nii.gz 10-09-1675_labels.nii.gz -lstat > 10-09-1675_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/10-09-1675;sed -i "1,2d" 10-09-1675_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/10-09-1675;sed "s/\s\+/,/g" 10-09-1675_pre_ATROPOS_GMM_POSTERIORS4.txt > 10-09-1675_pre_ATROPOS_GMM_POSTERIORS4.csv cd $(WORKDIR)/10-09-1675;sed -i "s/^/10-09-1675_pre_ATROPOS_GMM_POSTERIORS4,/" 10-09-1675_pre_ATROPOS_GMM_POSTERIORS4.csv job_10-09-1675_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO: cd $(WORKDIR)/10-09-1675;c3d 10-09-1675_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.nii.gz 10-09-1675_labels.nii.gz -lstat > 10-09-1675_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/10-09-1675;sed -i "1,2d" 10-09-1675_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/10-09-1675;sed "s/\s\+/,/g" 10-09-1675_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt > 10-09-1675_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv cd $(WORKDIR)/10-09-1675;sed -i "s/^/10-09-1675_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO,/" 10-09-1675_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv job_10-09-1675_wCSV_pre_ENTROPY_RADIUS_1: cd $(WORKDIR)/10-09-1675;c3d 10-09-1675_pre_ENTROPY_RADIUS_1.nii.gz 10-09-1675_labels.nii.gz -lstat > 10-09-1675_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/10-09-1675;sed -i "1,2d" 10-09-1675_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/10-09-1675;sed "s/\s\+/,/g" 10-09-1675_pre_ENTROPY_RADIUS_1.txt > 10-09-1675_pre_ENTROPY_RADIUS_1.csv cd $(WORKDIR)/10-09-1675;sed -i "s/^/10-09-1675_pre_ENTROPY_RADIUS_1,/" 10-09-1675_pre_ENTROPY_RADIUS_1.csv job_10-09-1675_wCSV_pre_ENTROPY_RADIUS_3: cd $(WORKDIR)/10-09-1675;c3d 10-09-1675_pre_ENTROPY_RADIUS_3.nii.gz 10-09-1675_labels.nii.gz -lstat > 10-09-1675_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/10-09-1675;sed -i "1,2d" 10-09-1675_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/10-09-1675;sed "s/\s\+/,/g" 10-09-1675_pre_ENTROPY_RADIUS_3.txt > 10-09-1675_pre_ENTROPY_RADIUS_3.csv cd $(WORKDIR)/10-09-1675;sed -i "s/^/10-09-1675_pre_ENTROPY_RADIUS_3,/" 10-09-1675_pre_ENTROPY_RADIUS_3.csv job_10-09-1675_wCSV_pre_MEAN_RADIUS_1: cd $(WORKDIR)/10-09-1675;c3d 10-09-1675_pre_MEAN_RADIUS_1.nii.gz 10-09-1675_labels.nii.gz -lstat > 10-09-1675_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/10-09-1675;sed -i "1,2d" 10-09-1675_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/10-09-1675;sed "s/\s\+/,/g" 10-09-1675_pre_MEAN_RADIUS_1.txt > 10-09-1675_pre_MEAN_RADIUS_1.csv cd $(WORKDIR)/10-09-1675;sed -i "s/^/10-09-1675_pre_MEAN_RADIUS_1,/" 10-09-1675_pre_MEAN_RADIUS_1.csv job_10-09-1675_wCSV_pre_MEAN_RADIUS_3: cd $(WORKDIR)/10-09-1675;c3d 10-09-1675_pre_MEAN_RADIUS_3.nii.gz 10-09-1675_labels.nii.gz -lstat > 10-09-1675_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/10-09-1675;sed -i "1,2d" 10-09-1675_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/10-09-1675;sed "s/\s\+/,/g" 10-09-1675_pre_MEAN_RADIUS_3.txt > 10-09-1675_pre_MEAN_RADIUS_3.csv cd $(WORKDIR)/10-09-1675;sed -i "s/^/10-09-1675_pre_MEAN_RADIUS_3,/" 10-09-1675_pre_MEAN_RADIUS_3.csv job_10-09-1675_wCSV_pre_NORMALIZED: cd $(WORKDIR)/10-09-1675;c3d 10-09-1675_pre_NORMALIZED.nii.gz 10-09-1675_labels.nii.gz -lstat > 10-09-1675_pre_NORMALIZED.txt cd $(WORKDIR)/10-09-1675;sed -i "1,2d" 10-09-1675_pre_NORMALIZED.txt cd $(WORKDIR)/10-09-1675;sed "s/\s\+/,/g" 10-09-1675_pre_NORMALIZED.txt > 10-09-1675_pre_NORMALIZED.csv cd $(WORKDIR)/10-09-1675;sed -i "s/^/10-09-1675_pre_NORMALIZED,/" 10-09-1675_pre_NORMALIZED.csv job_10-09-1675_wCSV_pre_SIGMA_RADIUS_1: cd $(WORKDIR)/10-09-1675;c3d 10-09-1675_pre_SIGMA_RADIUS_1.nii.gz 10-09-1675_labels.nii.gz -lstat > 10-09-1675_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/10-09-1675;sed -i "1,2d" 10-09-1675_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/10-09-1675;sed "s/\s\+/,/g" 10-09-1675_pre_SIGMA_RADIUS_1.txt > 10-09-1675_pre_SIGMA_RADIUS_1.csv cd $(WORKDIR)/10-09-1675;sed -i "s/^/10-09-1675_pre_SIGMA_RADIUS_1,/" 10-09-1675_pre_SIGMA_RADIUS_1.csv job_10-09-1675_wCSV_pre_SIGMA_RADIUS_3: cd $(WORKDIR)/10-09-1675;c3d 10-09-1675_pre_SIGMA_RADIUS_3.nii.gz 10-09-1675_labels.nii.gz -lstat > 10-09-1675_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/10-09-1675;sed -i "1,2d" 10-09-1675_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/10-09-1675;sed "s/\s\+/,/g" 10-09-1675_pre_SIGMA_RADIUS_3.txt > 10-09-1675_pre_SIGMA_RADIUS_3.csv cd $(WORKDIR)/10-09-1675;sed -i "s/^/10-09-1675_pre_SIGMA_RADIUS_3,/" 10-09-1675_pre_SIGMA_RADIUS_3.csv job_10-09-1675_wCSV_pre_SKEWNESS_RADIUS_1: cd $(WORKDIR)/10-09-1675;c3d 10-09-1675_pre_SKEWNESS_RADIUS_1.nii.gz 10-09-1675_labels.nii.gz -lstat > 10-09-1675_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/10-09-1675;sed -i "1,2d" 10-09-1675_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/10-09-1675;sed "s/\s\+/,/g" 10-09-1675_pre_SKEWNESS_RADIUS_1.txt > 10-09-1675_pre_SKEWNESS_RADIUS_1.csv cd $(WORKDIR)/10-09-1675;sed -i "s/^/10-09-1675_pre_SKEWNESS_RADIUS_1,/" 10-09-1675_pre_SKEWNESS_RADIUS_1.csv job_10-09-1675_wCSV_pre_SKEWNESS_RADIUS_3: cd $(WORKDIR)/10-09-1675;c3d 10-09-1675_pre_SKEWNESS_RADIUS_3.nii.gz 10-09-1675_labels.nii.gz -lstat > 10-09-1675_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/10-09-1675;sed -i "1,2d" 10-09-1675_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/10-09-1675;sed "s/\s\+/,/g" 10-09-1675_pre_SKEWNESS_RADIUS_3.txt > 10-09-1675_pre_SKEWNESS_RADIUS_3.csv cd $(WORKDIR)/10-09-1675;sed -i "s/^/10-09-1675_pre_SKEWNESS_RADIUS_3,/" 10-09-1675_pre_SKEWNESS_RADIUS_3.csv job_10-09-1675_wCSV_pre__DIFFERENCE: cd $(WORKDIR)/10-09-1675;c3d 10-09-1675_pre__DIFFERENCE.nii.gz 10-09-1675_labels.nii.gz -lstat > 10-09-1675_pre__DIFFERENCE.txt cd $(WORKDIR)/10-09-1675;sed -i "1,2d" 10-09-1675_pre__DIFFERENCE.txt cd $(WORKDIR)/10-09-1675;sed "s/\s\+/,/g" 10-09-1675_pre__DIFFERENCE.txt > 10-09-1675_pre__DIFFERENCE.csv cd $(WORKDIR)/10-09-1675;sed -i "s/^/10-09-1675_pre__DIFFERENCE,/" 10-09-1675_pre__DIFFERENCE.csv job_11-09-2043_crFI: cd $(WORKDIR)/11-09-2043;c3d 11-09-2043_grey.nii.gz 11-09-2043_labels.nii.gz -copy-transform -o 11-09-2043_labels.nii.gz cd $(WORKDIR)/11-09-2043;c3d 11-09-2043_grey.nii.gz -orient RAI -o 11-09-2043_grey.nii.gz cd $(WORKDIR)/11-09-2043;c3d 11-09-2043_labels.nii.gz -orient RAI -o 11-09-2043_labels.nii.gz cd $(WORKDIR)/11-09-2043;c3d 11-09-2043_labels.nii.gz -binarize -o 11-09-2043_mask.nii.gz cd $(WORKDIR)/11-09-2043;../createFeatureImagesOvary.sh -d 3 -x 11-09-2043_mask.nii.gz -l3 -n pre -a 11-09-2043_grey.nii.gz -f 0x2 -o ./11-09-2043_ -r 1 -r 3 -s 2 -b 4 job_11-09-2043_wCSV_NORMALIZED_DISTANCE: cd $(WORKDIR)/11-09-2043;c3d 11-09-2043_NORMALIZED_DISTANCE.nii.gz 11-09-2043_labels.nii.gz -lstat > 11-09-2043_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/11-09-2043;sed -i "1,2d" 11-09-2043_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/11-09-2043;sed "s/\s\+/,/g" 11-09-2043_NORMALIZED_DISTANCE.txt > 11-09-2043_NORMALIZED_DISTANCE.csv cd $(WORKDIR)/11-09-2043;sed -i "s/^/11-09-2043_NORMALIZED_DISTANCE,/" 11-09-2043_NORMALIZED_DISTANCE.csv job_11-09-2043_wCSV_pre_ATROPOS_GMM: cd $(WORKDIR)/11-09-2043;c3d 11-09-2043_pre_ATROPOS_GMM.nii.gz 11-09-2043_labels.nii.gz -lstat > 11-09-2043_pre_ATROPOS_GMM.txt cd $(WORKDIR)/11-09-2043;sed -i "1,2d" 11-09-2043_pre_ATROPOS_GMM.txt cd $(WORKDIR)/11-09-2043;sed "s/\s\+/,/g" 11-09-2043_pre_ATROPOS_GMM.txt > 11-09-2043_pre_ATROPOS_GMM.csv cd $(WORKDIR)/11-09-2043;sed -i "s/^/11-09-2043_pre_ATROPOS_GMM,/" 11-09-2043_pre_ATROPOS_GMM.csv job_11-09-2043_wCSV_pre_ATROPOS_GMM_ECCENTRICITY: cd $(WORKDIR)/11-09-2043;c3d 11-09-2043_pre_ATROPOS_GMM_ECCENTRICITY.nii.gz 11-09-2043_labels.nii.gz -lstat > 11-09-2043_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/11-09-2043;sed -i "1,2d" 11-09-2043_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/11-09-2043;sed "s/\s\+/,/g" 11-09-2043_pre_ATROPOS_GMM_ECCENTRICITY.txt > 11-09-2043_pre_ATROPOS_GMM_ECCENTRICITY.csv cd $(WORKDIR)/11-09-2043;sed -i "s/^/11-09-2043_pre_ATROPOS_GMM_ECCENTRICITY,/" 11-09-2043_pre_ATROPOS_GMM_ECCENTRICITY.csv job_11-09-2043_wCSV_pre_ATROPOS_GMM_ELONGATION: cd $(WORKDIR)/11-09-2043;c3d 11-09-2043_pre_ATROPOS_GMM_ELONGATION.nii.gz 11-09-2043_labels.nii.gz -lstat > 11-09-2043_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/11-09-2043;sed -i "1,2d" 11-09-2043_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/11-09-2043;sed "s/\s\+/,/g" 11-09-2043_pre_ATROPOS_GMM_ELONGATION.txt > 11-09-2043_pre_ATROPOS_GMM_ELONGATION.csv cd $(WORKDIR)/11-09-2043;sed -i "s/^/11-09-2043_pre_ATROPOS_GMM_ELONGATION,/" 11-09-2043_pre_ATROPOS_GMM_ELONGATION.csv job_11-09-2043_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE: cd $(WORKDIR)/11-09-2043;c3d 11-09-2043_pre_ATROPOS_GMM_LABEL3_DISTANCE.nii.gz 11-09-2043_labels.nii.gz -lstat > 11-09-2043_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/11-09-2043;sed -i "1,2d" 11-09-2043_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/11-09-2043;sed "s/\s\+/,/g" 11-09-2043_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt > 11-09-2043_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv cd $(WORKDIR)/11-09-2043;sed -i "s/^/11-09-2043_pre_ATROPOS_GMM_LABEL3_DISTANCE,/" 11-09-2043_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv job_11-09-2043_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME: cd $(WORKDIR)/11-09-2043;c3d 11-09-2043_pre_ATROPOS_GMM_PHYSICAL_VOLUME.nii.gz 11-09-2043_labels.nii.gz -lstat > 11-09-2043_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/11-09-2043;sed -i "1,2d" 11-09-2043_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/11-09-2043;sed "s/\s\+/,/g" 11-09-2043_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt > 11-09-2043_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv cd $(WORKDIR)/11-09-2043;sed -i "s/^/11-09-2043_pre_ATROPOS_GMM_PHYSICAL_VOLUME,/" 11-09-2043_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv job_11-09-2043_wCSV_pre_ATROPOS_GMM_POSTERIORS1: cd $(WORKDIR)/11-09-2043;c3d 11-09-2043_pre_ATROPOS_GMM_POSTERIORS1.nii.gz 11-09-2043_labels.nii.gz -lstat > 11-09-2043_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/11-09-2043;sed -i "1,2d" 11-09-2043_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/11-09-2043;sed "s/\s\+/,/g" 11-09-2043_pre_ATROPOS_GMM_POSTERIORS1.txt > 11-09-2043_pre_ATROPOS_GMM_POSTERIORS1.csv cd $(WORKDIR)/11-09-2043;sed -i "s/^/11-09-2043_pre_ATROPOS_GMM_POSTERIORS1,/" 11-09-2043_pre_ATROPOS_GMM_POSTERIORS1.csv job_11-09-2043_wCSV_pre_ATROPOS_GMM_POSTERIORS2: cd $(WORKDIR)/11-09-2043;c3d 11-09-2043_pre_ATROPOS_GMM_POSTERIORS2.nii.gz 11-09-2043_labels.nii.gz -lstat > 11-09-2043_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/11-09-2043;sed -i "1,2d" 11-09-2043_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/11-09-2043;sed "s/\s\+/,/g" 11-09-2043_pre_ATROPOS_GMM_POSTERIORS2.txt > 11-09-2043_pre_ATROPOS_GMM_POSTERIORS2.csv cd $(WORKDIR)/11-09-2043;sed -i "s/^/11-09-2043_pre_ATROPOS_GMM_POSTERIORS2,/" 11-09-2043_pre_ATROPOS_GMM_POSTERIORS2.csv job_11-09-2043_wCSV_pre_ATROPOS_GMM_POSTERIORS3: cd $(WORKDIR)/11-09-2043;c3d 11-09-2043_pre_ATROPOS_GMM_POSTERIORS3.nii.gz 11-09-2043_labels.nii.gz -lstat > 11-09-2043_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/11-09-2043;sed -i "1,2d" 11-09-2043_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/11-09-2043;sed "s/\s\+/,/g" 11-09-2043_pre_ATROPOS_GMM_POSTERIORS3.txt > 11-09-2043_pre_ATROPOS_GMM_POSTERIORS3.csv cd $(WORKDIR)/11-09-2043;sed -i "s/^/11-09-2043_pre_ATROPOS_GMM_POSTERIORS3,/" 11-09-2043_pre_ATROPOS_GMM_POSTERIORS3.csv job_11-09-2043_wCSV_pre_ATROPOS_GMM_POSTERIORS4: cd $(WORKDIR)/11-09-2043;c3d 11-09-2043_pre_ATROPOS_GMM_POSTERIORS4.nii.gz 11-09-2043_labels.nii.gz -lstat > 11-09-2043_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/11-09-2043;sed -i "1,2d" 11-09-2043_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/11-09-2043;sed "s/\s\+/,/g" 11-09-2043_pre_ATROPOS_GMM_POSTERIORS4.txt > 11-09-2043_pre_ATROPOS_GMM_POSTERIORS4.csv cd $(WORKDIR)/11-09-2043;sed -i "s/^/11-09-2043_pre_ATROPOS_GMM_POSTERIORS4,/" 11-09-2043_pre_ATROPOS_GMM_POSTERIORS4.csv job_11-09-2043_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO: cd $(WORKDIR)/11-09-2043;c3d 11-09-2043_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.nii.gz 11-09-2043_labels.nii.gz -lstat > 11-09-2043_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/11-09-2043;sed -i "1,2d" 11-09-2043_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/11-09-2043;sed "s/\s\+/,/g" 11-09-2043_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt > 11-09-2043_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv cd $(WORKDIR)/11-09-2043;sed -i "s/^/11-09-2043_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO,/" 11-09-2043_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv job_11-09-2043_wCSV_pre_ENTROPY_RADIUS_1: cd $(WORKDIR)/11-09-2043;c3d 11-09-2043_pre_ENTROPY_RADIUS_1.nii.gz 11-09-2043_labels.nii.gz -lstat > 11-09-2043_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/11-09-2043;sed -i "1,2d" 11-09-2043_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/11-09-2043;sed "s/\s\+/,/g" 11-09-2043_pre_ENTROPY_RADIUS_1.txt > 11-09-2043_pre_ENTROPY_RADIUS_1.csv cd $(WORKDIR)/11-09-2043;sed -i "s/^/11-09-2043_pre_ENTROPY_RADIUS_1,/" 11-09-2043_pre_ENTROPY_RADIUS_1.csv job_11-09-2043_wCSV_pre_ENTROPY_RADIUS_3: cd $(WORKDIR)/11-09-2043;c3d 11-09-2043_pre_ENTROPY_RADIUS_3.nii.gz 11-09-2043_labels.nii.gz -lstat > 11-09-2043_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/11-09-2043;sed -i "1,2d" 11-09-2043_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/11-09-2043;sed "s/\s\+/,/g" 11-09-2043_pre_ENTROPY_RADIUS_3.txt > 11-09-2043_pre_ENTROPY_RADIUS_3.csv cd $(WORKDIR)/11-09-2043;sed -i "s/^/11-09-2043_pre_ENTROPY_RADIUS_3,/" 11-09-2043_pre_ENTROPY_RADIUS_3.csv job_11-09-2043_wCSV_pre_MEAN_RADIUS_1: cd $(WORKDIR)/11-09-2043;c3d 11-09-2043_pre_MEAN_RADIUS_1.nii.gz 11-09-2043_labels.nii.gz -lstat > 11-09-2043_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/11-09-2043;sed -i "1,2d" 11-09-2043_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/11-09-2043;sed "s/\s\+/,/g" 11-09-2043_pre_MEAN_RADIUS_1.txt > 11-09-2043_pre_MEAN_RADIUS_1.csv cd $(WORKDIR)/11-09-2043;sed -i "s/^/11-09-2043_pre_MEAN_RADIUS_1,/" 11-09-2043_pre_MEAN_RADIUS_1.csv job_11-09-2043_wCSV_pre_MEAN_RADIUS_3: cd $(WORKDIR)/11-09-2043;c3d 11-09-2043_pre_MEAN_RADIUS_3.nii.gz 11-09-2043_labels.nii.gz -lstat > 11-09-2043_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/11-09-2043;sed -i "1,2d" 11-09-2043_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/11-09-2043;sed "s/\s\+/,/g" 11-09-2043_pre_MEAN_RADIUS_3.txt > 11-09-2043_pre_MEAN_RADIUS_3.csv cd $(WORKDIR)/11-09-2043;sed -i "s/^/11-09-2043_pre_MEAN_RADIUS_3,/" 11-09-2043_pre_MEAN_RADIUS_3.csv job_11-09-2043_wCSV_pre_NORMALIZED: cd $(WORKDIR)/11-09-2043;c3d 11-09-2043_pre_NORMALIZED.nii.gz 11-09-2043_labels.nii.gz -lstat > 11-09-2043_pre_NORMALIZED.txt cd $(WORKDIR)/11-09-2043;sed -i "1,2d" 11-09-2043_pre_NORMALIZED.txt cd $(WORKDIR)/11-09-2043;sed "s/\s\+/,/g" 11-09-2043_pre_NORMALIZED.txt > 11-09-2043_pre_NORMALIZED.csv cd $(WORKDIR)/11-09-2043;sed -i "s/^/11-09-2043_pre_NORMALIZED,/" 11-09-2043_pre_NORMALIZED.csv job_11-09-2043_wCSV_pre_SIGMA_RADIUS_1: cd $(WORKDIR)/11-09-2043;c3d 11-09-2043_pre_SIGMA_RADIUS_1.nii.gz 11-09-2043_labels.nii.gz -lstat > 11-09-2043_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/11-09-2043;sed -i "1,2d" 11-09-2043_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/11-09-2043;sed "s/\s\+/,/g" 11-09-2043_pre_SIGMA_RADIUS_1.txt > 11-09-2043_pre_SIGMA_RADIUS_1.csv cd $(WORKDIR)/11-09-2043;sed -i "s/^/11-09-2043_pre_SIGMA_RADIUS_1,/" 11-09-2043_pre_SIGMA_RADIUS_1.csv job_11-09-2043_wCSV_pre_SIGMA_RADIUS_3: cd $(WORKDIR)/11-09-2043;c3d 11-09-2043_pre_SIGMA_RADIUS_3.nii.gz 11-09-2043_labels.nii.gz -lstat > 11-09-2043_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/11-09-2043;sed -i "1,2d" 11-09-2043_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/11-09-2043;sed "s/\s\+/,/g" 11-09-2043_pre_SIGMA_RADIUS_3.txt > 11-09-2043_pre_SIGMA_RADIUS_3.csv cd $(WORKDIR)/11-09-2043;sed -i "s/^/11-09-2043_pre_SIGMA_RADIUS_3,/" 11-09-2043_pre_SIGMA_RADIUS_3.csv job_11-09-2043_wCSV_pre_SKEWNESS_RADIUS_1: cd $(WORKDIR)/11-09-2043;c3d 11-09-2043_pre_SKEWNESS_RADIUS_1.nii.gz 11-09-2043_labels.nii.gz -lstat > 11-09-2043_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/11-09-2043;sed -i "1,2d" 11-09-2043_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/11-09-2043;sed "s/\s\+/,/g" 11-09-2043_pre_SKEWNESS_RADIUS_1.txt > 11-09-2043_pre_SKEWNESS_RADIUS_1.csv cd $(WORKDIR)/11-09-2043;sed -i "s/^/11-09-2043_pre_SKEWNESS_RADIUS_1,/" 11-09-2043_pre_SKEWNESS_RADIUS_1.csv job_11-09-2043_wCSV_pre_SKEWNESS_RADIUS_3: cd $(WORKDIR)/11-09-2043;c3d 11-09-2043_pre_SKEWNESS_RADIUS_3.nii.gz 11-09-2043_labels.nii.gz -lstat > 11-09-2043_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/11-09-2043;sed -i "1,2d" 11-09-2043_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/11-09-2043;sed "s/\s\+/,/g" 11-09-2043_pre_SKEWNESS_RADIUS_3.txt > 11-09-2043_pre_SKEWNESS_RADIUS_3.csv cd $(WORKDIR)/11-09-2043;sed -i "s/^/11-09-2043_pre_SKEWNESS_RADIUS_3,/" 11-09-2043_pre_SKEWNESS_RADIUS_3.csv job_11-09-2043_wCSV_pre__DIFFERENCE: cd $(WORKDIR)/11-09-2043;c3d 11-09-2043_pre__DIFFERENCE.nii.gz 11-09-2043_labels.nii.gz -lstat > 11-09-2043_pre__DIFFERENCE.txt cd $(WORKDIR)/11-09-2043;sed -i "1,2d" 11-09-2043_pre__DIFFERENCE.txt cd $(WORKDIR)/11-09-2043;sed "s/\s\+/,/g" 11-09-2043_pre__DIFFERENCE.txt > 11-09-2043_pre__DIFFERENCE.csv cd $(WORKDIR)/11-09-2043;sed -i "s/^/11-09-2043_pre__DIFFERENCE,/" 11-09-2043_pre__DIFFERENCE.csv job_12-09-2044_crFI: cd $(WORKDIR)/12-09-2044;c3d 12-09-2044_grey.nii.gz 12-09-2044_labels.nii.gz -copy-transform -o 12-09-2044_labels.nii.gz cd $(WORKDIR)/12-09-2044;c3d 12-09-2044_grey.nii.gz -orient RAI -o 12-09-2044_grey.nii.gz cd $(WORKDIR)/12-09-2044;c3d 12-09-2044_labels.nii.gz -orient RAI -o 12-09-2044_labels.nii.gz cd $(WORKDIR)/12-09-2044;c3d 12-09-2044_labels.nii.gz -binarize -o 12-09-2044_mask.nii.gz cd $(WORKDIR)/12-09-2044;../createFeatureImagesOvary.sh -d 3 -x 12-09-2044_mask.nii.gz -l3 -n pre -a 12-09-2044_grey.nii.gz -f 0x2 -o ./12-09-2044_ -r 1 -r 3 -s 2 -b 4 job_12-09-2044_wCSV_NORMALIZED_DISTANCE: cd $(WORKDIR)/12-09-2044;c3d 12-09-2044_NORMALIZED_DISTANCE.nii.gz 12-09-2044_labels.nii.gz -lstat > 12-09-2044_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/12-09-2044;sed -i "1,2d" 12-09-2044_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/12-09-2044;sed "s/\s\+/,/g" 12-09-2044_NORMALIZED_DISTANCE.txt > 12-09-2044_NORMALIZED_DISTANCE.csv cd $(WORKDIR)/12-09-2044;sed -i "s/^/12-09-2044_NORMALIZED_DISTANCE,/" 12-09-2044_NORMALIZED_DISTANCE.csv job_12-09-2044_wCSV_pre_ATROPOS_GMM: cd $(WORKDIR)/12-09-2044;c3d 12-09-2044_pre_ATROPOS_GMM.nii.gz 12-09-2044_labels.nii.gz -lstat > 12-09-2044_pre_ATROPOS_GMM.txt cd $(WORKDIR)/12-09-2044;sed -i "1,2d" 12-09-2044_pre_ATROPOS_GMM.txt cd $(WORKDIR)/12-09-2044;sed "s/\s\+/,/g" 12-09-2044_pre_ATROPOS_GMM.txt > 12-09-2044_pre_ATROPOS_GMM.csv cd $(WORKDIR)/12-09-2044;sed -i "s/^/12-09-2044_pre_ATROPOS_GMM,/" 12-09-2044_pre_ATROPOS_GMM.csv job_12-09-2044_wCSV_pre_ATROPOS_GMM_ECCENTRICITY: cd $(WORKDIR)/12-09-2044;c3d 12-09-2044_pre_ATROPOS_GMM_ECCENTRICITY.nii.gz 12-09-2044_labels.nii.gz -lstat > 12-09-2044_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/12-09-2044;sed -i "1,2d" 12-09-2044_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/12-09-2044;sed "s/\s\+/,/g" 12-09-2044_pre_ATROPOS_GMM_ECCENTRICITY.txt > 12-09-2044_pre_ATROPOS_GMM_ECCENTRICITY.csv cd $(WORKDIR)/12-09-2044;sed -i "s/^/12-09-2044_pre_ATROPOS_GMM_ECCENTRICITY,/" 12-09-2044_pre_ATROPOS_GMM_ECCENTRICITY.csv job_12-09-2044_wCSV_pre_ATROPOS_GMM_ELONGATION: cd $(WORKDIR)/12-09-2044;c3d 12-09-2044_pre_ATROPOS_GMM_ELONGATION.nii.gz 12-09-2044_labels.nii.gz -lstat > 12-09-2044_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/12-09-2044;sed -i "1,2d" 12-09-2044_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/12-09-2044;sed "s/\s\+/,/g" 12-09-2044_pre_ATROPOS_GMM_ELONGATION.txt > 12-09-2044_pre_ATROPOS_GMM_ELONGATION.csv cd $(WORKDIR)/12-09-2044;sed -i "s/^/12-09-2044_pre_ATROPOS_GMM_ELONGATION,/" 12-09-2044_pre_ATROPOS_GMM_ELONGATION.csv job_12-09-2044_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE: cd $(WORKDIR)/12-09-2044;c3d 12-09-2044_pre_ATROPOS_GMM_LABEL3_DISTANCE.nii.gz 12-09-2044_labels.nii.gz -lstat > 12-09-2044_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/12-09-2044;sed -i "1,2d" 12-09-2044_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/12-09-2044;sed "s/\s\+/,/g" 12-09-2044_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt > 12-09-2044_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv cd $(WORKDIR)/12-09-2044;sed -i "s/^/12-09-2044_pre_ATROPOS_GMM_LABEL3_DISTANCE,/" 12-09-2044_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv job_12-09-2044_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME: cd $(WORKDIR)/12-09-2044;c3d 12-09-2044_pre_ATROPOS_GMM_PHYSICAL_VOLUME.nii.gz 12-09-2044_labels.nii.gz -lstat > 12-09-2044_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/12-09-2044;sed -i "1,2d" 12-09-2044_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/12-09-2044;sed "s/\s\+/,/g" 12-09-2044_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt > 12-09-2044_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv cd $(WORKDIR)/12-09-2044;sed -i "s/^/12-09-2044_pre_ATROPOS_GMM_PHYSICAL_VOLUME,/" 12-09-2044_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv job_12-09-2044_wCSV_pre_ATROPOS_GMM_POSTERIORS1: cd $(WORKDIR)/12-09-2044;c3d 12-09-2044_pre_ATROPOS_GMM_POSTERIORS1.nii.gz 12-09-2044_labels.nii.gz -lstat > 12-09-2044_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/12-09-2044;sed -i "1,2d" 12-09-2044_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/12-09-2044;sed "s/\s\+/,/g" 12-09-2044_pre_ATROPOS_GMM_POSTERIORS1.txt > 12-09-2044_pre_ATROPOS_GMM_POSTERIORS1.csv cd $(WORKDIR)/12-09-2044;sed -i "s/^/12-09-2044_pre_ATROPOS_GMM_POSTERIORS1,/" 12-09-2044_pre_ATROPOS_GMM_POSTERIORS1.csv job_12-09-2044_wCSV_pre_ATROPOS_GMM_POSTERIORS2: cd $(WORKDIR)/12-09-2044;c3d 12-09-2044_pre_ATROPOS_GMM_POSTERIORS2.nii.gz 12-09-2044_labels.nii.gz -lstat > 12-09-2044_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/12-09-2044;sed -i "1,2d" 12-09-2044_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/12-09-2044;sed "s/\s\+/,/g" 12-09-2044_pre_ATROPOS_GMM_POSTERIORS2.txt > 12-09-2044_pre_ATROPOS_GMM_POSTERIORS2.csv cd $(WORKDIR)/12-09-2044;sed -i "s/^/12-09-2044_pre_ATROPOS_GMM_POSTERIORS2,/" 12-09-2044_pre_ATROPOS_GMM_POSTERIORS2.csv job_12-09-2044_wCSV_pre_ATROPOS_GMM_POSTERIORS3: cd $(WORKDIR)/12-09-2044;c3d 12-09-2044_pre_ATROPOS_GMM_POSTERIORS3.nii.gz 12-09-2044_labels.nii.gz -lstat > 12-09-2044_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/12-09-2044;sed -i "1,2d" 12-09-2044_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/12-09-2044;sed "s/\s\+/,/g" 12-09-2044_pre_ATROPOS_GMM_POSTERIORS3.txt > 12-09-2044_pre_ATROPOS_GMM_POSTERIORS3.csv cd $(WORKDIR)/12-09-2044;sed -i "s/^/12-09-2044_pre_ATROPOS_GMM_POSTERIORS3,/" 12-09-2044_pre_ATROPOS_GMM_POSTERIORS3.csv job_12-09-2044_wCSV_pre_ATROPOS_GMM_POSTERIORS4: cd $(WORKDIR)/12-09-2044;c3d 12-09-2044_pre_ATROPOS_GMM_POSTERIORS4.nii.gz 12-09-2044_labels.nii.gz -lstat > 12-09-2044_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/12-09-2044;sed -i "1,2d" 12-09-2044_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/12-09-2044;sed "s/\s\+/,/g" 12-09-2044_pre_ATROPOS_GMM_POSTERIORS4.txt > 12-09-2044_pre_ATROPOS_GMM_POSTERIORS4.csv cd $(WORKDIR)/12-09-2044;sed -i "s/^/12-09-2044_pre_ATROPOS_GMM_POSTERIORS4,/" 12-09-2044_pre_ATROPOS_GMM_POSTERIORS4.csv job_12-09-2044_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO: cd $(WORKDIR)/12-09-2044;c3d 12-09-2044_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.nii.gz 12-09-2044_labels.nii.gz -lstat > 12-09-2044_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/12-09-2044;sed -i "1,2d" 12-09-2044_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/12-09-2044;sed "s/\s\+/,/g" 12-09-2044_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt > 12-09-2044_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv cd $(WORKDIR)/12-09-2044;sed -i "s/^/12-09-2044_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO,/" 12-09-2044_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv job_12-09-2044_wCSV_pre_ENTROPY_RADIUS_1: cd $(WORKDIR)/12-09-2044;c3d 12-09-2044_pre_ENTROPY_RADIUS_1.nii.gz 12-09-2044_labels.nii.gz -lstat > 12-09-2044_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/12-09-2044;sed -i "1,2d" 12-09-2044_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/12-09-2044;sed "s/\s\+/,/g" 12-09-2044_pre_ENTROPY_RADIUS_1.txt > 12-09-2044_pre_ENTROPY_RADIUS_1.csv cd $(WORKDIR)/12-09-2044;sed -i "s/^/12-09-2044_pre_ENTROPY_RADIUS_1,/" 12-09-2044_pre_ENTROPY_RADIUS_1.csv job_12-09-2044_wCSV_pre_ENTROPY_RADIUS_3: cd $(WORKDIR)/12-09-2044;c3d 12-09-2044_pre_ENTROPY_RADIUS_3.nii.gz 12-09-2044_labels.nii.gz -lstat > 12-09-2044_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/12-09-2044;sed -i "1,2d" 12-09-2044_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/12-09-2044;sed "s/\s\+/,/g" 12-09-2044_pre_ENTROPY_RADIUS_3.txt > 12-09-2044_pre_ENTROPY_RADIUS_3.csv cd $(WORKDIR)/12-09-2044;sed -i "s/^/12-09-2044_pre_ENTROPY_RADIUS_3,/" 12-09-2044_pre_ENTROPY_RADIUS_3.csv job_12-09-2044_wCSV_pre_MEAN_RADIUS_1: cd $(WORKDIR)/12-09-2044;c3d 12-09-2044_pre_MEAN_RADIUS_1.nii.gz 12-09-2044_labels.nii.gz -lstat > 12-09-2044_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/12-09-2044;sed -i "1,2d" 12-09-2044_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/12-09-2044;sed "s/\s\+/,/g" 12-09-2044_pre_MEAN_RADIUS_1.txt > 12-09-2044_pre_MEAN_RADIUS_1.csv cd $(WORKDIR)/12-09-2044;sed -i "s/^/12-09-2044_pre_MEAN_RADIUS_1,/" 12-09-2044_pre_MEAN_RADIUS_1.csv job_12-09-2044_wCSV_pre_MEAN_RADIUS_3: cd $(WORKDIR)/12-09-2044;c3d 12-09-2044_pre_MEAN_RADIUS_3.nii.gz 12-09-2044_labels.nii.gz -lstat > 12-09-2044_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/12-09-2044;sed -i "1,2d" 12-09-2044_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/12-09-2044;sed "s/\s\+/,/g" 12-09-2044_pre_MEAN_RADIUS_3.txt > 12-09-2044_pre_MEAN_RADIUS_3.csv cd $(WORKDIR)/12-09-2044;sed -i "s/^/12-09-2044_pre_MEAN_RADIUS_3,/" 12-09-2044_pre_MEAN_RADIUS_3.csv job_12-09-2044_wCSV_pre_NORMALIZED: cd $(WORKDIR)/12-09-2044;c3d 12-09-2044_pre_NORMALIZED.nii.gz 12-09-2044_labels.nii.gz -lstat > 12-09-2044_pre_NORMALIZED.txt cd $(WORKDIR)/12-09-2044;sed -i "1,2d" 12-09-2044_pre_NORMALIZED.txt cd $(WORKDIR)/12-09-2044;sed "s/\s\+/,/g" 12-09-2044_pre_NORMALIZED.txt > 12-09-2044_pre_NORMALIZED.csv cd $(WORKDIR)/12-09-2044;sed -i "s/^/12-09-2044_pre_NORMALIZED,/" 12-09-2044_pre_NORMALIZED.csv job_12-09-2044_wCSV_pre_SIGMA_RADIUS_1: cd $(WORKDIR)/12-09-2044;c3d 12-09-2044_pre_SIGMA_RADIUS_1.nii.gz 12-09-2044_labels.nii.gz -lstat > 12-09-2044_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/12-09-2044;sed -i "1,2d" 12-09-2044_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/12-09-2044;sed "s/\s\+/,/g" 12-09-2044_pre_SIGMA_RADIUS_1.txt > 12-09-2044_pre_SIGMA_RADIUS_1.csv cd $(WORKDIR)/12-09-2044;sed -i "s/^/12-09-2044_pre_SIGMA_RADIUS_1,/" 12-09-2044_pre_SIGMA_RADIUS_1.csv job_12-09-2044_wCSV_pre_SIGMA_RADIUS_3: cd $(WORKDIR)/12-09-2044;c3d 12-09-2044_pre_SIGMA_RADIUS_3.nii.gz 12-09-2044_labels.nii.gz -lstat > 12-09-2044_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/12-09-2044;sed -i "1,2d" 12-09-2044_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/12-09-2044;sed "s/\s\+/,/g" 12-09-2044_pre_SIGMA_RADIUS_3.txt > 12-09-2044_pre_SIGMA_RADIUS_3.csv cd $(WORKDIR)/12-09-2044;sed -i "s/^/12-09-2044_pre_SIGMA_RADIUS_3,/" 12-09-2044_pre_SIGMA_RADIUS_3.csv job_12-09-2044_wCSV_pre_SKEWNESS_RADIUS_1: cd $(WORKDIR)/12-09-2044;c3d 12-09-2044_pre_SKEWNESS_RADIUS_1.nii.gz 12-09-2044_labels.nii.gz -lstat > 12-09-2044_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/12-09-2044;sed -i "1,2d" 12-09-2044_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/12-09-2044;sed "s/\s\+/,/g" 12-09-2044_pre_SKEWNESS_RADIUS_1.txt > 12-09-2044_pre_SKEWNESS_RADIUS_1.csv cd $(WORKDIR)/12-09-2044;sed -i "s/^/12-09-2044_pre_SKEWNESS_RADIUS_1,/" 12-09-2044_pre_SKEWNESS_RADIUS_1.csv job_12-09-2044_wCSV_pre_SKEWNESS_RADIUS_3: cd $(WORKDIR)/12-09-2044;c3d 12-09-2044_pre_SKEWNESS_RADIUS_3.nii.gz 12-09-2044_labels.nii.gz -lstat > 12-09-2044_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/12-09-2044;sed -i "1,2d" 12-09-2044_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/12-09-2044;sed "s/\s\+/,/g" 12-09-2044_pre_SKEWNESS_RADIUS_3.txt > 12-09-2044_pre_SKEWNESS_RADIUS_3.csv cd $(WORKDIR)/12-09-2044;sed -i "s/^/12-09-2044_pre_SKEWNESS_RADIUS_3,/" 12-09-2044_pre_SKEWNESS_RADIUS_3.csv job_12-09-2044_wCSV_pre__DIFFERENCE: cd $(WORKDIR)/12-09-2044;c3d 12-09-2044_pre__DIFFERENCE.nii.gz 12-09-2044_labels.nii.gz -lstat > 12-09-2044_pre__DIFFERENCE.txt cd $(WORKDIR)/12-09-2044;sed -i "1,2d" 12-09-2044_pre__DIFFERENCE.txt cd $(WORKDIR)/12-09-2044;sed "s/\s\+/,/g" 12-09-2044_pre__DIFFERENCE.txt > 12-09-2044_pre__DIFFERENCE.csv cd $(WORKDIR)/12-09-2044;sed -i "s/^/12-09-2044_pre__DIFFERENCE,/" 12-09-2044_pre__DIFFERENCE.csv job_13-09-2045_crFI: cd $(WORKDIR)/13-09-2045;c3d 13-09-2045_grey.nii.gz 13-09-2045_labels.nii.gz -copy-transform -o 13-09-2045_labels.nii.gz cd $(WORKDIR)/13-09-2045;c3d 13-09-2045_grey.nii.gz -orient RAI -o 13-09-2045_grey.nii.gz cd $(WORKDIR)/13-09-2045;c3d 13-09-2045_labels.nii.gz -orient RAI -o 13-09-2045_labels.nii.gz cd $(WORKDIR)/13-09-2045;c3d 13-09-2045_labels.nii.gz -binarize -o 13-09-2045_mask.nii.gz cd $(WORKDIR)/13-09-2045;../createFeatureImagesOvary.sh -d 3 -x 13-09-2045_mask.nii.gz -l3 -n pre -a 13-09-2045_grey.nii.gz -f 0x2 -o ./13-09-2045_ -r 1 -r 3 -s 2 -b 4 job_13-09-2045_wCSV_NORMALIZED_DISTANCE: cd $(WORKDIR)/13-09-2045;c3d 13-09-2045_NORMALIZED_DISTANCE.nii.gz 13-09-2045_labels.nii.gz -lstat > 13-09-2045_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/13-09-2045;sed -i "1,2d" 13-09-2045_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/13-09-2045;sed "s/\s\+/,/g" 13-09-2045_NORMALIZED_DISTANCE.txt > 13-09-2045_NORMALIZED_DISTANCE.csv cd $(WORKDIR)/13-09-2045;sed -i "s/^/13-09-2045_NORMALIZED_DISTANCE,/" 13-09-2045_NORMALIZED_DISTANCE.csv job_13-09-2045_wCSV_pre_ATROPOS_GMM: cd $(WORKDIR)/13-09-2045;c3d 13-09-2045_pre_ATROPOS_GMM.nii.gz 13-09-2045_labels.nii.gz -lstat > 13-09-2045_pre_ATROPOS_GMM.txt cd $(WORKDIR)/13-09-2045;sed -i "1,2d" 13-09-2045_pre_ATROPOS_GMM.txt cd $(WORKDIR)/13-09-2045;sed "s/\s\+/,/g" 13-09-2045_pre_ATROPOS_GMM.txt > 13-09-2045_pre_ATROPOS_GMM.csv cd $(WORKDIR)/13-09-2045;sed -i "s/^/13-09-2045_pre_ATROPOS_GMM,/" 13-09-2045_pre_ATROPOS_GMM.csv job_13-09-2045_wCSV_pre_ATROPOS_GMM_ECCENTRICITY: cd $(WORKDIR)/13-09-2045;c3d 13-09-2045_pre_ATROPOS_GMM_ECCENTRICITY.nii.gz 13-09-2045_labels.nii.gz -lstat > 13-09-2045_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/13-09-2045;sed -i "1,2d" 13-09-2045_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/13-09-2045;sed "s/\s\+/,/g" 13-09-2045_pre_ATROPOS_GMM_ECCENTRICITY.txt > 13-09-2045_pre_ATROPOS_GMM_ECCENTRICITY.csv cd $(WORKDIR)/13-09-2045;sed -i "s/^/13-09-2045_pre_ATROPOS_GMM_ECCENTRICITY,/" 13-09-2045_pre_ATROPOS_GMM_ECCENTRICITY.csv job_13-09-2045_wCSV_pre_ATROPOS_GMM_ELONGATION: cd $(WORKDIR)/13-09-2045;c3d 13-09-2045_pre_ATROPOS_GMM_ELONGATION.nii.gz 13-09-2045_labels.nii.gz -lstat > 13-09-2045_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/13-09-2045;sed -i "1,2d" 13-09-2045_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/13-09-2045;sed "s/\s\+/,/g" 13-09-2045_pre_ATROPOS_GMM_ELONGATION.txt > 13-09-2045_pre_ATROPOS_GMM_ELONGATION.csv cd $(WORKDIR)/13-09-2045;sed -i "s/^/13-09-2045_pre_ATROPOS_GMM_ELONGATION,/" 13-09-2045_pre_ATROPOS_GMM_ELONGATION.csv job_13-09-2045_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE: cd $(WORKDIR)/13-09-2045;c3d 13-09-2045_pre_ATROPOS_GMM_LABEL3_DISTANCE.nii.gz 13-09-2045_labels.nii.gz -lstat > 13-09-2045_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/13-09-2045;sed -i "1,2d" 13-09-2045_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/13-09-2045;sed "s/\s\+/,/g" 13-09-2045_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt > 13-09-2045_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv cd $(WORKDIR)/13-09-2045;sed -i "s/^/13-09-2045_pre_ATROPOS_GMM_LABEL3_DISTANCE,/" 13-09-2045_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv job_13-09-2045_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME: cd $(WORKDIR)/13-09-2045;c3d 13-09-2045_pre_ATROPOS_GMM_PHYSICAL_VOLUME.nii.gz 13-09-2045_labels.nii.gz -lstat > 13-09-2045_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/13-09-2045;sed -i "1,2d" 13-09-2045_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/13-09-2045;sed "s/\s\+/,/g" 13-09-2045_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt > 13-09-2045_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv cd $(WORKDIR)/13-09-2045;sed -i "s/^/13-09-2045_pre_ATROPOS_GMM_PHYSICAL_VOLUME,/" 13-09-2045_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv job_13-09-2045_wCSV_pre_ATROPOS_GMM_POSTERIORS1: cd $(WORKDIR)/13-09-2045;c3d 13-09-2045_pre_ATROPOS_GMM_POSTERIORS1.nii.gz 13-09-2045_labels.nii.gz -lstat > 13-09-2045_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/13-09-2045;sed -i "1,2d" 13-09-2045_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/13-09-2045;sed "s/\s\+/,/g" 13-09-2045_pre_ATROPOS_GMM_POSTERIORS1.txt > 13-09-2045_pre_ATROPOS_GMM_POSTERIORS1.csv cd $(WORKDIR)/13-09-2045;sed -i "s/^/13-09-2045_pre_ATROPOS_GMM_POSTERIORS1,/" 13-09-2045_pre_ATROPOS_GMM_POSTERIORS1.csv job_13-09-2045_wCSV_pre_ATROPOS_GMM_POSTERIORS2: cd $(WORKDIR)/13-09-2045;c3d 13-09-2045_pre_ATROPOS_GMM_POSTERIORS2.nii.gz 13-09-2045_labels.nii.gz -lstat > 13-09-2045_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/13-09-2045;sed -i "1,2d" 13-09-2045_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/13-09-2045;sed "s/\s\+/,/g" 13-09-2045_pre_ATROPOS_GMM_POSTERIORS2.txt > 13-09-2045_pre_ATROPOS_GMM_POSTERIORS2.csv cd $(WORKDIR)/13-09-2045;sed -i "s/^/13-09-2045_pre_ATROPOS_GMM_POSTERIORS2,/" 13-09-2045_pre_ATROPOS_GMM_POSTERIORS2.csv job_13-09-2045_wCSV_pre_ATROPOS_GMM_POSTERIORS3: cd $(WORKDIR)/13-09-2045;c3d 13-09-2045_pre_ATROPOS_GMM_POSTERIORS3.nii.gz 13-09-2045_labels.nii.gz -lstat > 13-09-2045_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/13-09-2045;sed -i "1,2d" 13-09-2045_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/13-09-2045;sed "s/\s\+/,/g" 13-09-2045_pre_ATROPOS_GMM_POSTERIORS3.txt > 13-09-2045_pre_ATROPOS_GMM_POSTERIORS3.csv cd $(WORKDIR)/13-09-2045;sed -i "s/^/13-09-2045_pre_ATROPOS_GMM_POSTERIORS3,/" 13-09-2045_pre_ATROPOS_GMM_POSTERIORS3.csv job_13-09-2045_wCSV_pre_ATROPOS_GMM_POSTERIORS4: cd $(WORKDIR)/13-09-2045;c3d 13-09-2045_pre_ATROPOS_GMM_POSTERIORS4.nii.gz 13-09-2045_labels.nii.gz -lstat > 13-09-2045_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/13-09-2045;sed -i "1,2d" 13-09-2045_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/13-09-2045;sed "s/\s\+/,/g" 13-09-2045_pre_ATROPOS_GMM_POSTERIORS4.txt > 13-09-2045_pre_ATROPOS_GMM_POSTERIORS4.csv cd $(WORKDIR)/13-09-2045;sed -i "s/^/13-09-2045_pre_ATROPOS_GMM_POSTERIORS4,/" 13-09-2045_pre_ATROPOS_GMM_POSTERIORS4.csv job_13-09-2045_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO: cd $(WORKDIR)/13-09-2045;c3d 13-09-2045_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.nii.gz 13-09-2045_labels.nii.gz -lstat > 13-09-2045_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/13-09-2045;sed -i "1,2d" 13-09-2045_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/13-09-2045;sed "s/\s\+/,/g" 13-09-2045_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt > 13-09-2045_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv cd $(WORKDIR)/13-09-2045;sed -i "s/^/13-09-2045_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO,/" 13-09-2045_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv job_13-09-2045_wCSV_pre_ENTROPY_RADIUS_1: cd $(WORKDIR)/13-09-2045;c3d 13-09-2045_pre_ENTROPY_RADIUS_1.nii.gz 13-09-2045_labels.nii.gz -lstat > 13-09-2045_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/13-09-2045;sed -i "1,2d" 13-09-2045_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/13-09-2045;sed "s/\s\+/,/g" 13-09-2045_pre_ENTROPY_RADIUS_1.txt > 13-09-2045_pre_ENTROPY_RADIUS_1.csv cd $(WORKDIR)/13-09-2045;sed -i "s/^/13-09-2045_pre_ENTROPY_RADIUS_1,/" 13-09-2045_pre_ENTROPY_RADIUS_1.csv job_13-09-2045_wCSV_pre_ENTROPY_RADIUS_3: cd $(WORKDIR)/13-09-2045;c3d 13-09-2045_pre_ENTROPY_RADIUS_3.nii.gz 13-09-2045_labels.nii.gz -lstat > 13-09-2045_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/13-09-2045;sed -i "1,2d" 13-09-2045_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/13-09-2045;sed "s/\s\+/,/g" 13-09-2045_pre_ENTROPY_RADIUS_3.txt > 13-09-2045_pre_ENTROPY_RADIUS_3.csv cd $(WORKDIR)/13-09-2045;sed -i "s/^/13-09-2045_pre_ENTROPY_RADIUS_3,/" 13-09-2045_pre_ENTROPY_RADIUS_3.csv job_13-09-2045_wCSV_pre_MEAN_RADIUS_1: cd $(WORKDIR)/13-09-2045;c3d 13-09-2045_pre_MEAN_RADIUS_1.nii.gz 13-09-2045_labels.nii.gz -lstat > 13-09-2045_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/13-09-2045;sed -i "1,2d" 13-09-2045_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/13-09-2045;sed "s/\s\+/,/g" 13-09-2045_pre_MEAN_RADIUS_1.txt > 13-09-2045_pre_MEAN_RADIUS_1.csv cd $(WORKDIR)/13-09-2045;sed -i "s/^/13-09-2045_pre_MEAN_RADIUS_1,/" 13-09-2045_pre_MEAN_RADIUS_1.csv job_13-09-2045_wCSV_pre_MEAN_RADIUS_3: cd $(WORKDIR)/13-09-2045;c3d 13-09-2045_pre_MEAN_RADIUS_3.nii.gz 13-09-2045_labels.nii.gz -lstat > 13-09-2045_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/13-09-2045;sed -i "1,2d" 13-09-2045_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/13-09-2045;sed "s/\s\+/,/g" 13-09-2045_pre_MEAN_RADIUS_3.txt > 13-09-2045_pre_MEAN_RADIUS_3.csv cd $(WORKDIR)/13-09-2045;sed -i "s/^/13-09-2045_pre_MEAN_RADIUS_3,/" 13-09-2045_pre_MEAN_RADIUS_3.csv job_13-09-2045_wCSV_pre_NORMALIZED: cd $(WORKDIR)/13-09-2045;c3d 13-09-2045_pre_NORMALIZED.nii.gz 13-09-2045_labels.nii.gz -lstat > 13-09-2045_pre_NORMALIZED.txt cd $(WORKDIR)/13-09-2045;sed -i "1,2d" 13-09-2045_pre_NORMALIZED.txt cd $(WORKDIR)/13-09-2045;sed "s/\s\+/,/g" 13-09-2045_pre_NORMALIZED.txt > 13-09-2045_pre_NORMALIZED.csv cd $(WORKDIR)/13-09-2045;sed -i "s/^/13-09-2045_pre_NORMALIZED,/" 13-09-2045_pre_NORMALIZED.csv job_13-09-2045_wCSV_pre_SIGMA_RADIUS_1: cd $(WORKDIR)/13-09-2045;c3d 13-09-2045_pre_SIGMA_RADIUS_1.nii.gz 13-09-2045_labels.nii.gz -lstat > 13-09-2045_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/13-09-2045;sed -i "1,2d" 13-09-2045_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/13-09-2045;sed "s/\s\+/,/g" 13-09-2045_pre_SIGMA_RADIUS_1.txt > 13-09-2045_pre_SIGMA_RADIUS_1.csv cd $(WORKDIR)/13-09-2045;sed -i "s/^/13-09-2045_pre_SIGMA_RADIUS_1,/" 13-09-2045_pre_SIGMA_RADIUS_1.csv job_13-09-2045_wCSV_pre_SIGMA_RADIUS_3: cd $(WORKDIR)/13-09-2045;c3d 13-09-2045_pre_SIGMA_RADIUS_3.nii.gz 13-09-2045_labels.nii.gz -lstat > 13-09-2045_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/13-09-2045;sed -i "1,2d" 13-09-2045_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/13-09-2045;sed "s/\s\+/,/g" 13-09-2045_pre_SIGMA_RADIUS_3.txt > 13-09-2045_pre_SIGMA_RADIUS_3.csv cd $(WORKDIR)/13-09-2045;sed -i "s/^/13-09-2045_pre_SIGMA_RADIUS_3,/" 13-09-2045_pre_SIGMA_RADIUS_3.csv job_13-09-2045_wCSV_pre_SKEWNESS_RADIUS_1: cd $(WORKDIR)/13-09-2045;c3d 13-09-2045_pre_SKEWNESS_RADIUS_1.nii.gz 13-09-2045_labels.nii.gz -lstat > 13-09-2045_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/13-09-2045;sed -i "1,2d" 13-09-2045_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/13-09-2045;sed "s/\s\+/,/g" 13-09-2045_pre_SKEWNESS_RADIUS_1.txt > 13-09-2045_pre_SKEWNESS_RADIUS_1.csv cd $(WORKDIR)/13-09-2045;sed -i "s/^/13-09-2045_pre_SKEWNESS_RADIUS_1,/" 13-09-2045_pre_SKEWNESS_RADIUS_1.csv job_13-09-2045_wCSV_pre_SKEWNESS_RADIUS_3: cd $(WORKDIR)/13-09-2045;c3d 13-09-2045_pre_SKEWNESS_RADIUS_3.nii.gz 13-09-2045_labels.nii.gz -lstat > 13-09-2045_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/13-09-2045;sed -i "1,2d" 13-09-2045_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/13-09-2045;sed "s/\s\+/,/g" 13-09-2045_pre_SKEWNESS_RADIUS_3.txt > 13-09-2045_pre_SKEWNESS_RADIUS_3.csv cd $(WORKDIR)/13-09-2045;sed -i "s/^/13-09-2045_pre_SKEWNESS_RADIUS_3,/" 13-09-2045_pre_SKEWNESS_RADIUS_3.csv job_13-09-2045_wCSV_pre__DIFFERENCE: cd $(WORKDIR)/13-09-2045;c3d 13-09-2045_pre__DIFFERENCE.nii.gz 13-09-2045_labels.nii.gz -lstat > 13-09-2045_pre__DIFFERENCE.txt cd $(WORKDIR)/13-09-2045;sed -i "1,2d" 13-09-2045_pre__DIFFERENCE.txt cd $(WORKDIR)/13-09-2045;sed "s/\s\+/,/g" 13-09-2045_pre__DIFFERENCE.txt > 13-09-2045_pre__DIFFERENCE.csv cd $(WORKDIR)/13-09-2045;sed -i "s/^/13-09-2045_pre__DIFFERENCE,/" 13-09-2045_pre__DIFFERENCE.csv job_14-09-2050_crFI: cd $(WORKDIR)/14-09-2050;c3d 14-09-2050_grey.nii.gz 14-09-2050_labels.nii.gz -copy-transform -o 14-09-2050_labels.nii.gz cd $(WORKDIR)/14-09-2050;c3d 14-09-2050_grey.nii.gz -orient RAI -o 14-09-2050_grey.nii.gz cd $(WORKDIR)/14-09-2050;c3d 14-09-2050_labels.nii.gz -orient RAI -o 14-09-2050_labels.nii.gz cd $(WORKDIR)/14-09-2050;c3d 14-09-2050_labels.nii.gz -binarize -o 14-09-2050_mask.nii.gz cd $(WORKDIR)/14-09-2050;../createFeatureImagesOvary.sh -d 3 -x 14-09-2050_mask.nii.gz -l3 -n pre -a 14-09-2050_grey.nii.gz -f 0x2 -o ./14-09-2050_ -r 1 -r 3 -s 2 -b 4 job_14-09-2050_wCSV_NORMALIZED_DISTANCE: cd $(WORKDIR)/14-09-2050;c3d 14-09-2050_NORMALIZED_DISTANCE.nii.gz 14-09-2050_labels.nii.gz -lstat > 14-09-2050_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/14-09-2050;sed -i "1,2d" 14-09-2050_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/14-09-2050;sed "s/\s\+/,/g" 14-09-2050_NORMALIZED_DISTANCE.txt > 14-09-2050_NORMALIZED_DISTANCE.csv cd $(WORKDIR)/14-09-2050;sed -i "s/^/14-09-2050_NORMALIZED_DISTANCE,/" 14-09-2050_NORMALIZED_DISTANCE.csv job_14-09-2050_wCSV_pre_ATROPOS_GMM: cd $(WORKDIR)/14-09-2050;c3d 14-09-2050_pre_ATROPOS_GMM.nii.gz 14-09-2050_labels.nii.gz -lstat > 14-09-2050_pre_ATROPOS_GMM.txt cd $(WORKDIR)/14-09-2050;sed -i "1,2d" 14-09-2050_pre_ATROPOS_GMM.txt cd $(WORKDIR)/14-09-2050;sed "s/\s\+/,/g" 14-09-2050_pre_ATROPOS_GMM.txt > 14-09-2050_pre_ATROPOS_GMM.csv cd $(WORKDIR)/14-09-2050;sed -i "s/^/14-09-2050_pre_ATROPOS_GMM,/" 14-09-2050_pre_ATROPOS_GMM.csv job_14-09-2050_wCSV_pre_ATROPOS_GMM_ECCENTRICITY: cd $(WORKDIR)/14-09-2050;c3d 14-09-2050_pre_ATROPOS_GMM_ECCENTRICITY.nii.gz 14-09-2050_labels.nii.gz -lstat > 14-09-2050_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/14-09-2050;sed -i "1,2d" 14-09-2050_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/14-09-2050;sed "s/\s\+/,/g" 14-09-2050_pre_ATROPOS_GMM_ECCENTRICITY.txt > 14-09-2050_pre_ATROPOS_GMM_ECCENTRICITY.csv cd $(WORKDIR)/14-09-2050;sed -i "s/^/14-09-2050_pre_ATROPOS_GMM_ECCENTRICITY,/" 14-09-2050_pre_ATROPOS_GMM_ECCENTRICITY.csv job_14-09-2050_wCSV_pre_ATROPOS_GMM_ELONGATION: cd $(WORKDIR)/14-09-2050;c3d 14-09-2050_pre_ATROPOS_GMM_ELONGATION.nii.gz 14-09-2050_labels.nii.gz -lstat > 14-09-2050_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/14-09-2050;sed -i "1,2d" 14-09-2050_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/14-09-2050;sed "s/\s\+/,/g" 14-09-2050_pre_ATROPOS_GMM_ELONGATION.txt > 14-09-2050_pre_ATROPOS_GMM_ELONGATION.csv cd $(WORKDIR)/14-09-2050;sed -i "s/^/14-09-2050_pre_ATROPOS_GMM_ELONGATION,/" 14-09-2050_pre_ATROPOS_GMM_ELONGATION.csv job_14-09-2050_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE: cd $(WORKDIR)/14-09-2050;c3d 14-09-2050_pre_ATROPOS_GMM_LABEL3_DISTANCE.nii.gz 14-09-2050_labels.nii.gz -lstat > 14-09-2050_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/14-09-2050;sed -i "1,2d" 14-09-2050_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/14-09-2050;sed "s/\s\+/,/g" 14-09-2050_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt > 14-09-2050_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv cd $(WORKDIR)/14-09-2050;sed -i "s/^/14-09-2050_pre_ATROPOS_GMM_LABEL3_DISTANCE,/" 14-09-2050_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv job_14-09-2050_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME: cd $(WORKDIR)/14-09-2050;c3d 14-09-2050_pre_ATROPOS_GMM_PHYSICAL_VOLUME.nii.gz 14-09-2050_labels.nii.gz -lstat > 14-09-2050_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/14-09-2050;sed -i "1,2d" 14-09-2050_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/14-09-2050;sed "s/\s\+/,/g" 14-09-2050_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt > 14-09-2050_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv cd $(WORKDIR)/14-09-2050;sed -i "s/^/14-09-2050_pre_ATROPOS_GMM_PHYSICAL_VOLUME,/" 14-09-2050_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv job_14-09-2050_wCSV_pre_ATROPOS_GMM_POSTERIORS1: cd $(WORKDIR)/14-09-2050;c3d 14-09-2050_pre_ATROPOS_GMM_POSTERIORS1.nii.gz 14-09-2050_labels.nii.gz -lstat > 14-09-2050_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/14-09-2050;sed -i "1,2d" 14-09-2050_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/14-09-2050;sed "s/\s\+/,/g" 14-09-2050_pre_ATROPOS_GMM_POSTERIORS1.txt > 14-09-2050_pre_ATROPOS_GMM_POSTERIORS1.csv cd $(WORKDIR)/14-09-2050;sed -i "s/^/14-09-2050_pre_ATROPOS_GMM_POSTERIORS1,/" 14-09-2050_pre_ATROPOS_GMM_POSTERIORS1.csv job_14-09-2050_wCSV_pre_ATROPOS_GMM_POSTERIORS2: cd $(WORKDIR)/14-09-2050;c3d 14-09-2050_pre_ATROPOS_GMM_POSTERIORS2.nii.gz 14-09-2050_labels.nii.gz -lstat > 14-09-2050_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/14-09-2050;sed -i "1,2d" 14-09-2050_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/14-09-2050;sed "s/\s\+/,/g" 14-09-2050_pre_ATROPOS_GMM_POSTERIORS2.txt > 14-09-2050_pre_ATROPOS_GMM_POSTERIORS2.csv cd $(WORKDIR)/14-09-2050;sed -i "s/^/14-09-2050_pre_ATROPOS_GMM_POSTERIORS2,/" 14-09-2050_pre_ATROPOS_GMM_POSTERIORS2.csv job_14-09-2050_wCSV_pre_ATROPOS_GMM_POSTERIORS3: cd $(WORKDIR)/14-09-2050;c3d 14-09-2050_pre_ATROPOS_GMM_POSTERIORS3.nii.gz 14-09-2050_labels.nii.gz -lstat > 14-09-2050_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/14-09-2050;sed -i "1,2d" 14-09-2050_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/14-09-2050;sed "s/\s\+/,/g" 14-09-2050_pre_ATROPOS_GMM_POSTERIORS3.txt > 14-09-2050_pre_ATROPOS_GMM_POSTERIORS3.csv cd $(WORKDIR)/14-09-2050;sed -i "s/^/14-09-2050_pre_ATROPOS_GMM_POSTERIORS3,/" 14-09-2050_pre_ATROPOS_GMM_POSTERIORS3.csv job_14-09-2050_wCSV_pre_ATROPOS_GMM_POSTERIORS4: cd $(WORKDIR)/14-09-2050;c3d 14-09-2050_pre_ATROPOS_GMM_POSTERIORS4.nii.gz 14-09-2050_labels.nii.gz -lstat > 14-09-2050_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/14-09-2050;sed -i "1,2d" 14-09-2050_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/14-09-2050;sed "s/\s\+/,/g" 14-09-2050_pre_ATROPOS_GMM_POSTERIORS4.txt > 14-09-2050_pre_ATROPOS_GMM_POSTERIORS4.csv cd $(WORKDIR)/14-09-2050;sed -i "s/^/14-09-2050_pre_ATROPOS_GMM_POSTERIORS4,/" 14-09-2050_pre_ATROPOS_GMM_POSTERIORS4.csv job_14-09-2050_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO: cd $(WORKDIR)/14-09-2050;c3d 14-09-2050_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.nii.gz 14-09-2050_labels.nii.gz -lstat > 14-09-2050_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/14-09-2050;sed -i "1,2d" 14-09-2050_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/14-09-2050;sed "s/\s\+/,/g" 14-09-2050_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt > 14-09-2050_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv cd $(WORKDIR)/14-09-2050;sed -i "s/^/14-09-2050_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO,/" 14-09-2050_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv job_14-09-2050_wCSV_pre_ENTROPY_RADIUS_1: cd $(WORKDIR)/14-09-2050;c3d 14-09-2050_pre_ENTROPY_RADIUS_1.nii.gz 14-09-2050_labels.nii.gz -lstat > 14-09-2050_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/14-09-2050;sed -i "1,2d" 14-09-2050_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/14-09-2050;sed "s/\s\+/,/g" 14-09-2050_pre_ENTROPY_RADIUS_1.txt > 14-09-2050_pre_ENTROPY_RADIUS_1.csv cd $(WORKDIR)/14-09-2050;sed -i "s/^/14-09-2050_pre_ENTROPY_RADIUS_1,/" 14-09-2050_pre_ENTROPY_RADIUS_1.csv job_14-09-2050_wCSV_pre_ENTROPY_RADIUS_3: cd $(WORKDIR)/14-09-2050;c3d 14-09-2050_pre_ENTROPY_RADIUS_3.nii.gz 14-09-2050_labels.nii.gz -lstat > 14-09-2050_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/14-09-2050;sed -i "1,2d" 14-09-2050_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/14-09-2050;sed "s/\s\+/,/g" 14-09-2050_pre_ENTROPY_RADIUS_3.txt > 14-09-2050_pre_ENTROPY_RADIUS_3.csv cd $(WORKDIR)/14-09-2050;sed -i "s/^/14-09-2050_pre_ENTROPY_RADIUS_3,/" 14-09-2050_pre_ENTROPY_RADIUS_3.csv job_14-09-2050_wCSV_pre_MEAN_RADIUS_1: cd $(WORKDIR)/14-09-2050;c3d 14-09-2050_pre_MEAN_RADIUS_1.nii.gz 14-09-2050_labels.nii.gz -lstat > 14-09-2050_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/14-09-2050;sed -i "1,2d" 14-09-2050_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/14-09-2050;sed "s/\s\+/,/g" 14-09-2050_pre_MEAN_RADIUS_1.txt > 14-09-2050_pre_MEAN_RADIUS_1.csv cd $(WORKDIR)/14-09-2050;sed -i "s/^/14-09-2050_pre_MEAN_RADIUS_1,/" 14-09-2050_pre_MEAN_RADIUS_1.csv job_14-09-2050_wCSV_pre_MEAN_RADIUS_3: cd $(WORKDIR)/14-09-2050;c3d 14-09-2050_pre_MEAN_RADIUS_3.nii.gz 14-09-2050_labels.nii.gz -lstat > 14-09-2050_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/14-09-2050;sed -i "1,2d" 14-09-2050_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/14-09-2050;sed "s/\s\+/,/g" 14-09-2050_pre_MEAN_RADIUS_3.txt > 14-09-2050_pre_MEAN_RADIUS_3.csv cd $(WORKDIR)/14-09-2050;sed -i "s/^/14-09-2050_pre_MEAN_RADIUS_3,/" 14-09-2050_pre_MEAN_RADIUS_3.csv job_14-09-2050_wCSV_pre_NORMALIZED: cd $(WORKDIR)/14-09-2050;c3d 14-09-2050_pre_NORMALIZED.nii.gz 14-09-2050_labels.nii.gz -lstat > 14-09-2050_pre_NORMALIZED.txt cd $(WORKDIR)/14-09-2050;sed -i "1,2d" 14-09-2050_pre_NORMALIZED.txt cd $(WORKDIR)/14-09-2050;sed "s/\s\+/,/g" 14-09-2050_pre_NORMALIZED.txt > 14-09-2050_pre_NORMALIZED.csv cd $(WORKDIR)/14-09-2050;sed -i "s/^/14-09-2050_pre_NORMALIZED,/" 14-09-2050_pre_NORMALIZED.csv job_14-09-2050_wCSV_pre_SIGMA_RADIUS_1: cd $(WORKDIR)/14-09-2050;c3d 14-09-2050_pre_SIGMA_RADIUS_1.nii.gz 14-09-2050_labels.nii.gz -lstat > 14-09-2050_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/14-09-2050;sed -i "1,2d" 14-09-2050_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/14-09-2050;sed "s/\s\+/,/g" 14-09-2050_pre_SIGMA_RADIUS_1.txt > 14-09-2050_pre_SIGMA_RADIUS_1.csv cd $(WORKDIR)/14-09-2050;sed -i "s/^/14-09-2050_pre_SIGMA_RADIUS_1,/" 14-09-2050_pre_SIGMA_RADIUS_1.csv job_14-09-2050_wCSV_pre_SIGMA_RADIUS_3: cd $(WORKDIR)/14-09-2050;c3d 14-09-2050_pre_SIGMA_RADIUS_3.nii.gz 14-09-2050_labels.nii.gz -lstat > 14-09-2050_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/14-09-2050;sed -i "1,2d" 14-09-2050_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/14-09-2050;sed "s/\s\+/,/g" 14-09-2050_pre_SIGMA_RADIUS_3.txt > 14-09-2050_pre_SIGMA_RADIUS_3.csv cd $(WORKDIR)/14-09-2050;sed -i "s/^/14-09-2050_pre_SIGMA_RADIUS_3,/" 14-09-2050_pre_SIGMA_RADIUS_3.csv job_14-09-2050_wCSV_pre_SKEWNESS_RADIUS_1: cd $(WORKDIR)/14-09-2050;c3d 14-09-2050_pre_SKEWNESS_RADIUS_1.nii.gz 14-09-2050_labels.nii.gz -lstat > 14-09-2050_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/14-09-2050;sed -i "1,2d" 14-09-2050_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/14-09-2050;sed "s/\s\+/,/g" 14-09-2050_pre_SKEWNESS_RADIUS_1.txt > 14-09-2050_pre_SKEWNESS_RADIUS_1.csv cd $(WORKDIR)/14-09-2050;sed -i "s/^/14-09-2050_pre_SKEWNESS_RADIUS_1,/" 14-09-2050_pre_SKEWNESS_RADIUS_1.csv job_14-09-2050_wCSV_pre_SKEWNESS_RADIUS_3: cd $(WORKDIR)/14-09-2050;c3d 14-09-2050_pre_SKEWNESS_RADIUS_3.nii.gz 14-09-2050_labels.nii.gz -lstat > 14-09-2050_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/14-09-2050;sed -i "1,2d" 14-09-2050_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/14-09-2050;sed "s/\s\+/,/g" 14-09-2050_pre_SKEWNESS_RADIUS_3.txt > 14-09-2050_pre_SKEWNESS_RADIUS_3.csv cd $(WORKDIR)/14-09-2050;sed -i "s/^/14-09-2050_pre_SKEWNESS_RADIUS_3,/" 14-09-2050_pre_SKEWNESS_RADIUS_3.csv job_14-09-2050_wCSV_pre__DIFFERENCE: cd $(WORKDIR)/14-09-2050;c3d 14-09-2050_pre__DIFFERENCE.nii.gz 14-09-2050_labels.nii.gz -lstat > 14-09-2050_pre__DIFFERENCE.txt cd $(WORKDIR)/14-09-2050;sed -i "1,2d" 14-09-2050_pre__DIFFERENCE.txt cd $(WORKDIR)/14-09-2050;sed "s/\s\+/,/g" 14-09-2050_pre__DIFFERENCE.txt > 14-09-2050_pre__DIFFERENCE.csv cd $(WORKDIR)/14-09-2050;sed -i "s/^/14-09-2050_pre__DIFFERENCE,/" 14-09-2050_pre__DIFFERENCE.csv job_15-09-2051_crFI: cd $(WORKDIR)/15-09-2051;c3d 15-09-2051_grey.nii.gz 15-09-2051_labels.nii.gz -copy-transform -o 15-09-2051_labels.nii.gz cd $(WORKDIR)/15-09-2051;c3d 15-09-2051_grey.nii.gz -orient RAI -o 15-09-2051_grey.nii.gz cd $(WORKDIR)/15-09-2051;c3d 15-09-2051_labels.nii.gz -orient RAI -o 15-09-2051_labels.nii.gz cd $(WORKDIR)/15-09-2051;c3d 15-09-2051_labels.nii.gz -binarize -o 15-09-2051_mask.nii.gz cd $(WORKDIR)/15-09-2051;../createFeatureImagesOvary.sh -d 3 -x 15-09-2051_mask.nii.gz -l3 -n pre -a 15-09-2051_grey.nii.gz -f 0x2 -o ./15-09-2051_ -r 1 -r 3 -s 2 -b 4 job_15-09-2051_wCSV_NORMALIZED_DISTANCE: cd $(WORKDIR)/15-09-2051;c3d 15-09-2051_NORMALIZED_DISTANCE.nii.gz 15-09-2051_labels.nii.gz -lstat > 15-09-2051_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/15-09-2051;sed -i "1,2d" 15-09-2051_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/15-09-2051;sed "s/\s\+/,/g" 15-09-2051_NORMALIZED_DISTANCE.txt > 15-09-2051_NORMALIZED_DISTANCE.csv cd $(WORKDIR)/15-09-2051;sed -i "s/^/15-09-2051_NORMALIZED_DISTANCE,/" 15-09-2051_NORMALIZED_DISTANCE.csv job_15-09-2051_wCSV_pre_ATROPOS_GMM: cd $(WORKDIR)/15-09-2051;c3d 15-09-2051_pre_ATROPOS_GMM.nii.gz 15-09-2051_labels.nii.gz -lstat > 15-09-2051_pre_ATROPOS_GMM.txt cd $(WORKDIR)/15-09-2051;sed -i "1,2d" 15-09-2051_pre_ATROPOS_GMM.txt cd $(WORKDIR)/15-09-2051;sed "s/\s\+/,/g" 15-09-2051_pre_ATROPOS_GMM.txt > 15-09-2051_pre_ATROPOS_GMM.csv cd $(WORKDIR)/15-09-2051;sed -i "s/^/15-09-2051_pre_ATROPOS_GMM,/" 15-09-2051_pre_ATROPOS_GMM.csv job_15-09-2051_wCSV_pre_ATROPOS_GMM_ECCENTRICITY: cd $(WORKDIR)/15-09-2051;c3d 15-09-2051_pre_ATROPOS_GMM_ECCENTRICITY.nii.gz 15-09-2051_labels.nii.gz -lstat > 15-09-2051_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/15-09-2051;sed -i "1,2d" 15-09-2051_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/15-09-2051;sed "s/\s\+/,/g" 15-09-2051_pre_ATROPOS_GMM_ECCENTRICITY.txt > 15-09-2051_pre_ATROPOS_GMM_ECCENTRICITY.csv cd $(WORKDIR)/15-09-2051;sed -i "s/^/15-09-2051_pre_ATROPOS_GMM_ECCENTRICITY,/" 15-09-2051_pre_ATROPOS_GMM_ECCENTRICITY.csv job_15-09-2051_wCSV_pre_ATROPOS_GMM_ELONGATION: cd $(WORKDIR)/15-09-2051;c3d 15-09-2051_pre_ATROPOS_GMM_ELONGATION.nii.gz 15-09-2051_labels.nii.gz -lstat > 15-09-2051_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/15-09-2051;sed -i "1,2d" 15-09-2051_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/15-09-2051;sed "s/\s\+/,/g" 15-09-2051_pre_ATROPOS_GMM_ELONGATION.txt > 15-09-2051_pre_ATROPOS_GMM_ELONGATION.csv cd $(WORKDIR)/15-09-2051;sed -i "s/^/15-09-2051_pre_ATROPOS_GMM_ELONGATION,/" 15-09-2051_pre_ATROPOS_GMM_ELONGATION.csv job_15-09-2051_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE: cd $(WORKDIR)/15-09-2051;c3d 15-09-2051_pre_ATROPOS_GMM_LABEL3_DISTANCE.nii.gz 15-09-2051_labels.nii.gz -lstat > 15-09-2051_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/15-09-2051;sed -i "1,2d" 15-09-2051_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/15-09-2051;sed "s/\s\+/,/g" 15-09-2051_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt > 15-09-2051_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv cd $(WORKDIR)/15-09-2051;sed -i "s/^/15-09-2051_pre_ATROPOS_GMM_LABEL3_DISTANCE,/" 15-09-2051_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv job_15-09-2051_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME: cd $(WORKDIR)/15-09-2051;c3d 15-09-2051_pre_ATROPOS_GMM_PHYSICAL_VOLUME.nii.gz 15-09-2051_labels.nii.gz -lstat > 15-09-2051_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/15-09-2051;sed -i "1,2d" 15-09-2051_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/15-09-2051;sed "s/\s\+/,/g" 15-09-2051_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt > 15-09-2051_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv cd $(WORKDIR)/15-09-2051;sed -i "s/^/15-09-2051_pre_ATROPOS_GMM_PHYSICAL_VOLUME,/" 15-09-2051_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv job_15-09-2051_wCSV_pre_ATROPOS_GMM_POSTERIORS1: cd $(WORKDIR)/15-09-2051;c3d 15-09-2051_pre_ATROPOS_GMM_POSTERIORS1.nii.gz 15-09-2051_labels.nii.gz -lstat > 15-09-2051_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/15-09-2051;sed -i "1,2d" 15-09-2051_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/15-09-2051;sed "s/\s\+/,/g" 15-09-2051_pre_ATROPOS_GMM_POSTERIORS1.txt > 15-09-2051_pre_ATROPOS_GMM_POSTERIORS1.csv cd $(WORKDIR)/15-09-2051;sed -i "s/^/15-09-2051_pre_ATROPOS_GMM_POSTERIORS1,/" 15-09-2051_pre_ATROPOS_GMM_POSTERIORS1.csv job_15-09-2051_wCSV_pre_ATROPOS_GMM_POSTERIORS2: cd $(WORKDIR)/15-09-2051;c3d 15-09-2051_pre_ATROPOS_GMM_POSTERIORS2.nii.gz 15-09-2051_labels.nii.gz -lstat > 15-09-2051_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/15-09-2051;sed -i "1,2d" 15-09-2051_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/15-09-2051;sed "s/\s\+/,/g" 15-09-2051_pre_ATROPOS_GMM_POSTERIORS2.txt > 15-09-2051_pre_ATROPOS_GMM_POSTERIORS2.csv cd $(WORKDIR)/15-09-2051;sed -i "s/^/15-09-2051_pre_ATROPOS_GMM_POSTERIORS2,/" 15-09-2051_pre_ATROPOS_GMM_POSTERIORS2.csv job_15-09-2051_wCSV_pre_ATROPOS_GMM_POSTERIORS3: cd $(WORKDIR)/15-09-2051;c3d 15-09-2051_pre_ATROPOS_GMM_POSTERIORS3.nii.gz 15-09-2051_labels.nii.gz -lstat > 15-09-2051_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/15-09-2051;sed -i "1,2d" 15-09-2051_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/15-09-2051;sed "s/\s\+/,/g" 15-09-2051_pre_ATROPOS_GMM_POSTERIORS3.txt > 15-09-2051_pre_ATROPOS_GMM_POSTERIORS3.csv cd $(WORKDIR)/15-09-2051;sed -i "s/^/15-09-2051_pre_ATROPOS_GMM_POSTERIORS3,/" 15-09-2051_pre_ATROPOS_GMM_POSTERIORS3.csv job_15-09-2051_wCSV_pre_ATROPOS_GMM_POSTERIORS4: cd $(WORKDIR)/15-09-2051;c3d 15-09-2051_pre_ATROPOS_GMM_POSTERIORS4.nii.gz 15-09-2051_labels.nii.gz -lstat > 15-09-2051_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/15-09-2051;sed -i "1,2d" 15-09-2051_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/15-09-2051;sed "s/\s\+/,/g" 15-09-2051_pre_ATROPOS_GMM_POSTERIORS4.txt > 15-09-2051_pre_ATROPOS_GMM_POSTERIORS4.csv cd $(WORKDIR)/15-09-2051;sed -i "s/^/15-09-2051_pre_ATROPOS_GMM_POSTERIORS4,/" 15-09-2051_pre_ATROPOS_GMM_POSTERIORS4.csv job_15-09-2051_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO: cd $(WORKDIR)/15-09-2051;c3d 15-09-2051_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.nii.gz 15-09-2051_labels.nii.gz -lstat > 15-09-2051_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/15-09-2051;sed -i "1,2d" 15-09-2051_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/15-09-2051;sed "s/\s\+/,/g" 15-09-2051_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt > 15-09-2051_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv cd $(WORKDIR)/15-09-2051;sed -i "s/^/15-09-2051_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO,/" 15-09-2051_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv job_15-09-2051_wCSV_pre_ENTROPY_RADIUS_1: cd $(WORKDIR)/15-09-2051;c3d 15-09-2051_pre_ENTROPY_RADIUS_1.nii.gz 15-09-2051_labels.nii.gz -lstat > 15-09-2051_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/15-09-2051;sed -i "1,2d" 15-09-2051_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/15-09-2051;sed "s/\s\+/,/g" 15-09-2051_pre_ENTROPY_RADIUS_1.txt > 15-09-2051_pre_ENTROPY_RADIUS_1.csv cd $(WORKDIR)/15-09-2051;sed -i "s/^/15-09-2051_pre_ENTROPY_RADIUS_1,/" 15-09-2051_pre_ENTROPY_RADIUS_1.csv job_15-09-2051_wCSV_pre_ENTROPY_RADIUS_3: cd $(WORKDIR)/15-09-2051;c3d 15-09-2051_pre_ENTROPY_RADIUS_3.nii.gz 15-09-2051_labels.nii.gz -lstat > 15-09-2051_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/15-09-2051;sed -i "1,2d" 15-09-2051_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/15-09-2051;sed "s/\s\+/,/g" 15-09-2051_pre_ENTROPY_RADIUS_3.txt > 15-09-2051_pre_ENTROPY_RADIUS_3.csv cd $(WORKDIR)/15-09-2051;sed -i "s/^/15-09-2051_pre_ENTROPY_RADIUS_3,/" 15-09-2051_pre_ENTROPY_RADIUS_3.csv job_15-09-2051_wCSV_pre_MEAN_RADIUS_1: cd $(WORKDIR)/15-09-2051;c3d 15-09-2051_pre_MEAN_RADIUS_1.nii.gz 15-09-2051_labels.nii.gz -lstat > 15-09-2051_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/15-09-2051;sed -i "1,2d" 15-09-2051_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/15-09-2051;sed "s/\s\+/,/g" 15-09-2051_pre_MEAN_RADIUS_1.txt > 15-09-2051_pre_MEAN_RADIUS_1.csv cd $(WORKDIR)/15-09-2051;sed -i "s/^/15-09-2051_pre_MEAN_RADIUS_1,/" 15-09-2051_pre_MEAN_RADIUS_1.csv job_15-09-2051_wCSV_pre_MEAN_RADIUS_3: cd $(WORKDIR)/15-09-2051;c3d 15-09-2051_pre_MEAN_RADIUS_3.nii.gz 15-09-2051_labels.nii.gz -lstat > 15-09-2051_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/15-09-2051;sed -i "1,2d" 15-09-2051_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/15-09-2051;sed "s/\s\+/,/g" 15-09-2051_pre_MEAN_RADIUS_3.txt > 15-09-2051_pre_MEAN_RADIUS_3.csv cd $(WORKDIR)/15-09-2051;sed -i "s/^/15-09-2051_pre_MEAN_RADIUS_3,/" 15-09-2051_pre_MEAN_RADIUS_3.csv job_15-09-2051_wCSV_pre_NORMALIZED: cd $(WORKDIR)/15-09-2051;c3d 15-09-2051_pre_NORMALIZED.nii.gz 15-09-2051_labels.nii.gz -lstat > 15-09-2051_pre_NORMALIZED.txt cd $(WORKDIR)/15-09-2051;sed -i "1,2d" 15-09-2051_pre_NORMALIZED.txt cd $(WORKDIR)/15-09-2051;sed "s/\s\+/,/g" 15-09-2051_pre_NORMALIZED.txt > 15-09-2051_pre_NORMALIZED.csv cd $(WORKDIR)/15-09-2051;sed -i "s/^/15-09-2051_pre_NORMALIZED,/" 15-09-2051_pre_NORMALIZED.csv job_15-09-2051_wCSV_pre_SIGMA_RADIUS_1: cd $(WORKDIR)/15-09-2051;c3d 15-09-2051_pre_SIGMA_RADIUS_1.nii.gz 15-09-2051_labels.nii.gz -lstat > 15-09-2051_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/15-09-2051;sed -i "1,2d" 15-09-2051_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/15-09-2051;sed "s/\s\+/,/g" 15-09-2051_pre_SIGMA_RADIUS_1.txt > 15-09-2051_pre_SIGMA_RADIUS_1.csv cd $(WORKDIR)/15-09-2051;sed -i "s/^/15-09-2051_pre_SIGMA_RADIUS_1,/" 15-09-2051_pre_SIGMA_RADIUS_1.csv job_15-09-2051_wCSV_pre_SIGMA_RADIUS_3: cd $(WORKDIR)/15-09-2051;c3d 15-09-2051_pre_SIGMA_RADIUS_3.nii.gz 15-09-2051_labels.nii.gz -lstat > 15-09-2051_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/15-09-2051;sed -i "1,2d" 15-09-2051_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/15-09-2051;sed "s/\s\+/,/g" 15-09-2051_pre_SIGMA_RADIUS_3.txt > 15-09-2051_pre_SIGMA_RADIUS_3.csv cd $(WORKDIR)/15-09-2051;sed -i "s/^/15-09-2051_pre_SIGMA_RADIUS_3,/" 15-09-2051_pre_SIGMA_RADIUS_3.csv job_15-09-2051_wCSV_pre_SKEWNESS_RADIUS_1: cd $(WORKDIR)/15-09-2051;c3d 15-09-2051_pre_SKEWNESS_RADIUS_1.nii.gz 15-09-2051_labels.nii.gz -lstat > 15-09-2051_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/15-09-2051;sed -i "1,2d" 15-09-2051_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/15-09-2051;sed "s/\s\+/,/g" 15-09-2051_pre_SKEWNESS_RADIUS_1.txt > 15-09-2051_pre_SKEWNESS_RADIUS_1.csv cd $(WORKDIR)/15-09-2051;sed -i "s/^/15-09-2051_pre_SKEWNESS_RADIUS_1,/" 15-09-2051_pre_SKEWNESS_RADIUS_1.csv job_15-09-2051_wCSV_pre_SKEWNESS_RADIUS_3: cd $(WORKDIR)/15-09-2051;c3d 15-09-2051_pre_SKEWNESS_RADIUS_3.nii.gz 15-09-2051_labels.nii.gz -lstat > 15-09-2051_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/15-09-2051;sed -i "1,2d" 15-09-2051_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/15-09-2051;sed "s/\s\+/,/g" 15-09-2051_pre_SKEWNESS_RADIUS_3.txt > 15-09-2051_pre_SKEWNESS_RADIUS_3.csv cd $(WORKDIR)/15-09-2051;sed -i "s/^/15-09-2051_pre_SKEWNESS_RADIUS_3,/" 15-09-2051_pre_SKEWNESS_RADIUS_3.csv job_15-09-2051_wCSV_pre__DIFFERENCE: cd $(WORKDIR)/15-09-2051;c3d 15-09-2051_pre__DIFFERENCE.nii.gz 15-09-2051_labels.nii.gz -lstat > 15-09-2051_pre__DIFFERENCE.txt cd $(WORKDIR)/15-09-2051;sed -i "1,2d" 15-09-2051_pre__DIFFERENCE.txt cd $(WORKDIR)/15-09-2051;sed "s/\s\+/,/g" 15-09-2051_pre__DIFFERENCE.txt > 15-09-2051_pre__DIFFERENCE.csv cd $(WORKDIR)/15-09-2051;sed -i "s/^/15-09-2051_pre__DIFFERENCE,/" 15-09-2051_pre__DIFFERENCE.csv job_16-09-2053_crFI: cd $(WORKDIR)/16-09-2053;c3d 16-09-2053_grey.nii.gz 16-09-2053_labels.nii.gz -copy-transform -o 16-09-2053_labels.nii.gz cd $(WORKDIR)/16-09-2053;c3d 16-09-2053_grey.nii.gz -orient RAI -o 16-09-2053_grey.nii.gz cd $(WORKDIR)/16-09-2053;c3d 16-09-2053_labels.nii.gz -orient RAI -o 16-09-2053_labels.nii.gz cd $(WORKDIR)/16-09-2053;c3d 16-09-2053_labels.nii.gz -binarize -o 16-09-2053_mask.nii.gz cd $(WORKDIR)/16-09-2053;../createFeatureImagesOvary.sh -d 3 -x 16-09-2053_mask.nii.gz -l3 -n pre -a 16-09-2053_grey.nii.gz -f 0x2 -o ./16-09-2053_ -r 1 -r 3 -s 2 -b 4 job_16-09-2053_wCSV_NORMALIZED_DISTANCE: cd $(WORKDIR)/16-09-2053;c3d 16-09-2053_NORMALIZED_DISTANCE.nii.gz 16-09-2053_labels.nii.gz -lstat > 16-09-2053_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/16-09-2053;sed -i "1,2d" 16-09-2053_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/16-09-2053;sed "s/\s\+/,/g" 16-09-2053_NORMALIZED_DISTANCE.txt > 16-09-2053_NORMALIZED_DISTANCE.csv cd $(WORKDIR)/16-09-2053;sed -i "s/^/16-09-2053_NORMALIZED_DISTANCE,/" 16-09-2053_NORMALIZED_DISTANCE.csv job_16-09-2053_wCSV_pre_ATROPOS_GMM: cd $(WORKDIR)/16-09-2053;c3d 16-09-2053_pre_ATROPOS_GMM.nii.gz 16-09-2053_labels.nii.gz -lstat > 16-09-2053_pre_ATROPOS_GMM.txt cd $(WORKDIR)/16-09-2053;sed -i "1,2d" 16-09-2053_pre_ATROPOS_GMM.txt cd $(WORKDIR)/16-09-2053;sed "s/\s\+/,/g" 16-09-2053_pre_ATROPOS_GMM.txt > 16-09-2053_pre_ATROPOS_GMM.csv cd $(WORKDIR)/16-09-2053;sed -i "s/^/16-09-2053_pre_ATROPOS_GMM,/" 16-09-2053_pre_ATROPOS_GMM.csv job_16-09-2053_wCSV_pre_ATROPOS_GMM_ECCENTRICITY: cd $(WORKDIR)/16-09-2053;c3d 16-09-2053_pre_ATROPOS_GMM_ECCENTRICITY.nii.gz 16-09-2053_labels.nii.gz -lstat > 16-09-2053_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/16-09-2053;sed -i "1,2d" 16-09-2053_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/16-09-2053;sed "s/\s\+/,/g" 16-09-2053_pre_ATROPOS_GMM_ECCENTRICITY.txt > 16-09-2053_pre_ATROPOS_GMM_ECCENTRICITY.csv cd $(WORKDIR)/16-09-2053;sed -i "s/^/16-09-2053_pre_ATROPOS_GMM_ECCENTRICITY,/" 16-09-2053_pre_ATROPOS_GMM_ECCENTRICITY.csv job_16-09-2053_wCSV_pre_ATROPOS_GMM_ELONGATION: cd $(WORKDIR)/16-09-2053;c3d 16-09-2053_pre_ATROPOS_GMM_ELONGATION.nii.gz 16-09-2053_labels.nii.gz -lstat > 16-09-2053_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/16-09-2053;sed -i "1,2d" 16-09-2053_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/16-09-2053;sed "s/\s\+/,/g" 16-09-2053_pre_ATROPOS_GMM_ELONGATION.txt > 16-09-2053_pre_ATROPOS_GMM_ELONGATION.csv cd $(WORKDIR)/16-09-2053;sed -i "s/^/16-09-2053_pre_ATROPOS_GMM_ELONGATION,/" 16-09-2053_pre_ATROPOS_GMM_ELONGATION.csv job_16-09-2053_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE: cd $(WORKDIR)/16-09-2053;c3d 16-09-2053_pre_ATROPOS_GMM_LABEL3_DISTANCE.nii.gz 16-09-2053_labels.nii.gz -lstat > 16-09-2053_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/16-09-2053;sed -i "1,2d" 16-09-2053_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/16-09-2053;sed "s/\s\+/,/g" 16-09-2053_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt > 16-09-2053_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv cd $(WORKDIR)/16-09-2053;sed -i "s/^/16-09-2053_pre_ATROPOS_GMM_LABEL3_DISTANCE,/" 16-09-2053_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv job_16-09-2053_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME: cd $(WORKDIR)/16-09-2053;c3d 16-09-2053_pre_ATROPOS_GMM_PHYSICAL_VOLUME.nii.gz 16-09-2053_labels.nii.gz -lstat > 16-09-2053_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/16-09-2053;sed -i "1,2d" 16-09-2053_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/16-09-2053;sed "s/\s\+/,/g" 16-09-2053_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt > 16-09-2053_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv cd $(WORKDIR)/16-09-2053;sed -i "s/^/16-09-2053_pre_ATROPOS_GMM_PHYSICAL_VOLUME,/" 16-09-2053_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv job_16-09-2053_wCSV_pre_ATROPOS_GMM_POSTERIORS1: cd $(WORKDIR)/16-09-2053;c3d 16-09-2053_pre_ATROPOS_GMM_POSTERIORS1.nii.gz 16-09-2053_labels.nii.gz -lstat > 16-09-2053_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/16-09-2053;sed -i "1,2d" 16-09-2053_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/16-09-2053;sed "s/\s\+/,/g" 16-09-2053_pre_ATROPOS_GMM_POSTERIORS1.txt > 16-09-2053_pre_ATROPOS_GMM_POSTERIORS1.csv cd $(WORKDIR)/16-09-2053;sed -i "s/^/16-09-2053_pre_ATROPOS_GMM_POSTERIORS1,/" 16-09-2053_pre_ATROPOS_GMM_POSTERIORS1.csv job_16-09-2053_wCSV_pre_ATROPOS_GMM_POSTERIORS2: cd $(WORKDIR)/16-09-2053;c3d 16-09-2053_pre_ATROPOS_GMM_POSTERIORS2.nii.gz 16-09-2053_labels.nii.gz -lstat > 16-09-2053_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/16-09-2053;sed -i "1,2d" 16-09-2053_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/16-09-2053;sed "s/\s\+/,/g" 16-09-2053_pre_ATROPOS_GMM_POSTERIORS2.txt > 16-09-2053_pre_ATROPOS_GMM_POSTERIORS2.csv cd $(WORKDIR)/16-09-2053;sed -i "s/^/16-09-2053_pre_ATROPOS_GMM_POSTERIORS2,/" 16-09-2053_pre_ATROPOS_GMM_POSTERIORS2.csv job_16-09-2053_wCSV_pre_ATROPOS_GMM_POSTERIORS3: cd $(WORKDIR)/16-09-2053;c3d 16-09-2053_pre_ATROPOS_GMM_POSTERIORS3.nii.gz 16-09-2053_labels.nii.gz -lstat > 16-09-2053_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/16-09-2053;sed -i "1,2d" 16-09-2053_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/16-09-2053;sed "s/\s\+/,/g" 16-09-2053_pre_ATROPOS_GMM_POSTERIORS3.txt > 16-09-2053_pre_ATROPOS_GMM_POSTERIORS3.csv cd $(WORKDIR)/16-09-2053;sed -i "s/^/16-09-2053_pre_ATROPOS_GMM_POSTERIORS3,/" 16-09-2053_pre_ATROPOS_GMM_POSTERIORS3.csv job_16-09-2053_wCSV_pre_ATROPOS_GMM_POSTERIORS4: cd $(WORKDIR)/16-09-2053;c3d 16-09-2053_pre_ATROPOS_GMM_POSTERIORS4.nii.gz 16-09-2053_labels.nii.gz -lstat > 16-09-2053_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/16-09-2053;sed -i "1,2d" 16-09-2053_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/16-09-2053;sed "s/\s\+/,/g" 16-09-2053_pre_ATROPOS_GMM_POSTERIORS4.txt > 16-09-2053_pre_ATROPOS_GMM_POSTERIORS4.csv cd $(WORKDIR)/16-09-2053;sed -i "s/^/16-09-2053_pre_ATROPOS_GMM_POSTERIORS4,/" 16-09-2053_pre_ATROPOS_GMM_POSTERIORS4.csv job_16-09-2053_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO: cd $(WORKDIR)/16-09-2053;c3d 16-09-2053_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.nii.gz 16-09-2053_labels.nii.gz -lstat > 16-09-2053_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/16-09-2053;sed -i "1,2d" 16-09-2053_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/16-09-2053;sed "s/\s\+/,/g" 16-09-2053_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt > 16-09-2053_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv cd $(WORKDIR)/16-09-2053;sed -i "s/^/16-09-2053_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO,/" 16-09-2053_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv job_16-09-2053_wCSV_pre_ENTROPY_RADIUS_1: cd $(WORKDIR)/16-09-2053;c3d 16-09-2053_pre_ENTROPY_RADIUS_1.nii.gz 16-09-2053_labels.nii.gz -lstat > 16-09-2053_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/16-09-2053;sed -i "1,2d" 16-09-2053_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/16-09-2053;sed "s/\s\+/,/g" 16-09-2053_pre_ENTROPY_RADIUS_1.txt > 16-09-2053_pre_ENTROPY_RADIUS_1.csv cd $(WORKDIR)/16-09-2053;sed -i "s/^/16-09-2053_pre_ENTROPY_RADIUS_1,/" 16-09-2053_pre_ENTROPY_RADIUS_1.csv job_16-09-2053_wCSV_pre_ENTROPY_RADIUS_3: cd $(WORKDIR)/16-09-2053;c3d 16-09-2053_pre_ENTROPY_RADIUS_3.nii.gz 16-09-2053_labels.nii.gz -lstat > 16-09-2053_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/16-09-2053;sed -i "1,2d" 16-09-2053_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/16-09-2053;sed "s/\s\+/,/g" 16-09-2053_pre_ENTROPY_RADIUS_3.txt > 16-09-2053_pre_ENTROPY_RADIUS_3.csv cd $(WORKDIR)/16-09-2053;sed -i "s/^/16-09-2053_pre_ENTROPY_RADIUS_3,/" 16-09-2053_pre_ENTROPY_RADIUS_3.csv job_16-09-2053_wCSV_pre_MEAN_RADIUS_1: cd $(WORKDIR)/16-09-2053;c3d 16-09-2053_pre_MEAN_RADIUS_1.nii.gz 16-09-2053_labels.nii.gz -lstat > 16-09-2053_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/16-09-2053;sed -i "1,2d" 16-09-2053_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/16-09-2053;sed "s/\s\+/,/g" 16-09-2053_pre_MEAN_RADIUS_1.txt > 16-09-2053_pre_MEAN_RADIUS_1.csv cd $(WORKDIR)/16-09-2053;sed -i "s/^/16-09-2053_pre_MEAN_RADIUS_1,/" 16-09-2053_pre_MEAN_RADIUS_1.csv job_16-09-2053_wCSV_pre_MEAN_RADIUS_3: cd $(WORKDIR)/16-09-2053;c3d 16-09-2053_pre_MEAN_RADIUS_3.nii.gz 16-09-2053_labels.nii.gz -lstat > 16-09-2053_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/16-09-2053;sed -i "1,2d" 16-09-2053_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/16-09-2053;sed "s/\s\+/,/g" 16-09-2053_pre_MEAN_RADIUS_3.txt > 16-09-2053_pre_MEAN_RADIUS_3.csv cd $(WORKDIR)/16-09-2053;sed -i "s/^/16-09-2053_pre_MEAN_RADIUS_3,/" 16-09-2053_pre_MEAN_RADIUS_3.csv job_16-09-2053_wCSV_pre_NORMALIZED: cd $(WORKDIR)/16-09-2053;c3d 16-09-2053_pre_NORMALIZED.nii.gz 16-09-2053_labels.nii.gz -lstat > 16-09-2053_pre_NORMALIZED.txt cd $(WORKDIR)/16-09-2053;sed -i "1,2d" 16-09-2053_pre_NORMALIZED.txt cd $(WORKDIR)/16-09-2053;sed "s/\s\+/,/g" 16-09-2053_pre_NORMALIZED.txt > 16-09-2053_pre_NORMALIZED.csv cd $(WORKDIR)/16-09-2053;sed -i "s/^/16-09-2053_pre_NORMALIZED,/" 16-09-2053_pre_NORMALIZED.csv job_16-09-2053_wCSV_pre_SIGMA_RADIUS_1: cd $(WORKDIR)/16-09-2053;c3d 16-09-2053_pre_SIGMA_RADIUS_1.nii.gz 16-09-2053_labels.nii.gz -lstat > 16-09-2053_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/16-09-2053;sed -i "1,2d" 16-09-2053_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/16-09-2053;sed "s/\s\+/,/g" 16-09-2053_pre_SIGMA_RADIUS_1.txt > 16-09-2053_pre_SIGMA_RADIUS_1.csv cd $(WORKDIR)/16-09-2053;sed -i "s/^/16-09-2053_pre_SIGMA_RADIUS_1,/" 16-09-2053_pre_SIGMA_RADIUS_1.csv job_16-09-2053_wCSV_pre_SIGMA_RADIUS_3: cd $(WORKDIR)/16-09-2053;c3d 16-09-2053_pre_SIGMA_RADIUS_3.nii.gz 16-09-2053_labels.nii.gz -lstat > 16-09-2053_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/16-09-2053;sed -i "1,2d" 16-09-2053_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/16-09-2053;sed "s/\s\+/,/g" 16-09-2053_pre_SIGMA_RADIUS_3.txt > 16-09-2053_pre_SIGMA_RADIUS_3.csv cd $(WORKDIR)/16-09-2053;sed -i "s/^/16-09-2053_pre_SIGMA_RADIUS_3,/" 16-09-2053_pre_SIGMA_RADIUS_3.csv job_16-09-2053_wCSV_pre_SKEWNESS_RADIUS_1: cd $(WORKDIR)/16-09-2053;c3d 16-09-2053_pre_SKEWNESS_RADIUS_1.nii.gz 16-09-2053_labels.nii.gz -lstat > 16-09-2053_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/16-09-2053;sed -i "1,2d" 16-09-2053_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/16-09-2053;sed "s/\s\+/,/g" 16-09-2053_pre_SKEWNESS_RADIUS_1.txt > 16-09-2053_pre_SKEWNESS_RADIUS_1.csv cd $(WORKDIR)/16-09-2053;sed -i "s/^/16-09-2053_pre_SKEWNESS_RADIUS_1,/" 16-09-2053_pre_SKEWNESS_RADIUS_1.csv job_16-09-2053_wCSV_pre_SKEWNESS_RADIUS_3: cd $(WORKDIR)/16-09-2053;c3d 16-09-2053_pre_SKEWNESS_RADIUS_3.nii.gz 16-09-2053_labels.nii.gz -lstat > 16-09-2053_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/16-09-2053;sed -i "1,2d" 16-09-2053_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/16-09-2053;sed "s/\s\+/,/g" 16-09-2053_pre_SKEWNESS_RADIUS_3.txt > 16-09-2053_pre_SKEWNESS_RADIUS_3.csv cd $(WORKDIR)/16-09-2053;sed -i "s/^/16-09-2053_pre_SKEWNESS_RADIUS_3,/" 16-09-2053_pre_SKEWNESS_RADIUS_3.csv job_16-09-2053_wCSV_pre__DIFFERENCE: cd $(WORKDIR)/16-09-2053;c3d 16-09-2053_pre__DIFFERENCE.nii.gz 16-09-2053_labels.nii.gz -lstat > 16-09-2053_pre__DIFFERENCE.txt cd $(WORKDIR)/16-09-2053;sed -i "1,2d" 16-09-2053_pre__DIFFERENCE.txt cd $(WORKDIR)/16-09-2053;sed "s/\s\+/,/g" 16-09-2053_pre__DIFFERENCE.txt > 16-09-2053_pre__DIFFERENCE.csv cd $(WORKDIR)/16-09-2053;sed -i "s/^/16-09-2053_pre__DIFFERENCE,/" 16-09-2053_pre__DIFFERENCE.csv job_17-09-2054_crFI: cd $(WORKDIR)/17-09-2054;c3d 17-09-2054_grey.nii.gz 17-09-2054_labels.nii.gz -copy-transform -o 17-09-2054_labels.nii.gz cd $(WORKDIR)/17-09-2054;c3d 17-09-2054_grey.nii.gz -orient RAI -o 17-09-2054_grey.nii.gz cd $(WORKDIR)/17-09-2054;c3d 17-09-2054_labels.nii.gz -orient RAI -o 17-09-2054_labels.nii.gz cd $(WORKDIR)/17-09-2054;c3d 17-09-2054_labels.nii.gz -binarize -o 17-09-2054_mask.nii.gz cd $(WORKDIR)/17-09-2054;../createFeatureImagesOvary.sh -d 3 -x 17-09-2054_mask.nii.gz -l3 -n pre -a 17-09-2054_grey.nii.gz -f 0x2 -o ./17-09-2054_ -r 1 -r 3 -s 2 -b 4 job_17-09-2054_wCSV_NORMALIZED_DISTANCE: cd $(WORKDIR)/17-09-2054;c3d 17-09-2054_NORMALIZED_DISTANCE.nii.gz 17-09-2054_labels.nii.gz -lstat > 17-09-2054_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/17-09-2054;sed -i "1,2d" 17-09-2054_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/17-09-2054;sed "s/\s\+/,/g" 17-09-2054_NORMALIZED_DISTANCE.txt > 17-09-2054_NORMALIZED_DISTANCE.csv cd $(WORKDIR)/17-09-2054;sed -i "s/^/17-09-2054_NORMALIZED_DISTANCE,/" 17-09-2054_NORMALIZED_DISTANCE.csv job_17-09-2054_wCSV_pre_ATROPOS_GMM: cd $(WORKDIR)/17-09-2054;c3d 17-09-2054_pre_ATROPOS_GMM.nii.gz 17-09-2054_labels.nii.gz -lstat > 17-09-2054_pre_ATROPOS_GMM.txt cd $(WORKDIR)/17-09-2054;sed -i "1,2d" 17-09-2054_pre_ATROPOS_GMM.txt cd $(WORKDIR)/17-09-2054;sed "s/\s\+/,/g" 17-09-2054_pre_ATROPOS_GMM.txt > 17-09-2054_pre_ATROPOS_GMM.csv cd $(WORKDIR)/17-09-2054;sed -i "s/^/17-09-2054_pre_ATROPOS_GMM,/" 17-09-2054_pre_ATROPOS_GMM.csv job_17-09-2054_wCSV_pre_ATROPOS_GMM_ECCENTRICITY: cd $(WORKDIR)/17-09-2054;c3d 17-09-2054_pre_ATROPOS_GMM_ECCENTRICITY.nii.gz 17-09-2054_labels.nii.gz -lstat > 17-09-2054_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/17-09-2054;sed -i "1,2d" 17-09-2054_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/17-09-2054;sed "s/\s\+/,/g" 17-09-2054_pre_ATROPOS_GMM_ECCENTRICITY.txt > 17-09-2054_pre_ATROPOS_GMM_ECCENTRICITY.csv cd $(WORKDIR)/17-09-2054;sed -i "s/^/17-09-2054_pre_ATROPOS_GMM_ECCENTRICITY,/" 17-09-2054_pre_ATROPOS_GMM_ECCENTRICITY.csv job_17-09-2054_wCSV_pre_ATROPOS_GMM_ELONGATION: cd $(WORKDIR)/17-09-2054;c3d 17-09-2054_pre_ATROPOS_GMM_ELONGATION.nii.gz 17-09-2054_labels.nii.gz -lstat > 17-09-2054_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/17-09-2054;sed -i "1,2d" 17-09-2054_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/17-09-2054;sed "s/\s\+/,/g" 17-09-2054_pre_ATROPOS_GMM_ELONGATION.txt > 17-09-2054_pre_ATROPOS_GMM_ELONGATION.csv cd $(WORKDIR)/17-09-2054;sed -i "s/^/17-09-2054_pre_ATROPOS_GMM_ELONGATION,/" 17-09-2054_pre_ATROPOS_GMM_ELONGATION.csv job_17-09-2054_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE: cd $(WORKDIR)/17-09-2054;c3d 17-09-2054_pre_ATROPOS_GMM_LABEL3_DISTANCE.nii.gz 17-09-2054_labels.nii.gz -lstat > 17-09-2054_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/17-09-2054;sed -i "1,2d" 17-09-2054_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/17-09-2054;sed "s/\s\+/,/g" 17-09-2054_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt > 17-09-2054_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv cd $(WORKDIR)/17-09-2054;sed -i "s/^/17-09-2054_pre_ATROPOS_GMM_LABEL3_DISTANCE,/" 17-09-2054_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv job_17-09-2054_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME: cd $(WORKDIR)/17-09-2054;c3d 17-09-2054_pre_ATROPOS_GMM_PHYSICAL_VOLUME.nii.gz 17-09-2054_labels.nii.gz -lstat > 17-09-2054_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/17-09-2054;sed -i "1,2d" 17-09-2054_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/17-09-2054;sed "s/\s\+/,/g" 17-09-2054_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt > 17-09-2054_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv cd $(WORKDIR)/17-09-2054;sed -i "s/^/17-09-2054_pre_ATROPOS_GMM_PHYSICAL_VOLUME,/" 17-09-2054_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv job_17-09-2054_wCSV_pre_ATROPOS_GMM_POSTERIORS1: cd $(WORKDIR)/17-09-2054;c3d 17-09-2054_pre_ATROPOS_GMM_POSTERIORS1.nii.gz 17-09-2054_labels.nii.gz -lstat > 17-09-2054_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/17-09-2054;sed -i "1,2d" 17-09-2054_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/17-09-2054;sed "s/\s\+/,/g" 17-09-2054_pre_ATROPOS_GMM_POSTERIORS1.txt > 17-09-2054_pre_ATROPOS_GMM_POSTERIORS1.csv cd $(WORKDIR)/17-09-2054;sed -i "s/^/17-09-2054_pre_ATROPOS_GMM_POSTERIORS1,/" 17-09-2054_pre_ATROPOS_GMM_POSTERIORS1.csv job_17-09-2054_wCSV_pre_ATROPOS_GMM_POSTERIORS2: cd $(WORKDIR)/17-09-2054;c3d 17-09-2054_pre_ATROPOS_GMM_POSTERIORS2.nii.gz 17-09-2054_labels.nii.gz -lstat > 17-09-2054_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/17-09-2054;sed -i "1,2d" 17-09-2054_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/17-09-2054;sed "s/\s\+/,/g" 17-09-2054_pre_ATROPOS_GMM_POSTERIORS2.txt > 17-09-2054_pre_ATROPOS_GMM_POSTERIORS2.csv cd $(WORKDIR)/17-09-2054;sed -i "s/^/17-09-2054_pre_ATROPOS_GMM_POSTERIORS2,/" 17-09-2054_pre_ATROPOS_GMM_POSTERIORS2.csv job_17-09-2054_wCSV_pre_ATROPOS_GMM_POSTERIORS3: cd $(WORKDIR)/17-09-2054;c3d 17-09-2054_pre_ATROPOS_GMM_POSTERIORS3.nii.gz 17-09-2054_labels.nii.gz -lstat > 17-09-2054_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/17-09-2054;sed -i "1,2d" 17-09-2054_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/17-09-2054;sed "s/\s\+/,/g" 17-09-2054_pre_ATROPOS_GMM_POSTERIORS3.txt > 17-09-2054_pre_ATROPOS_GMM_POSTERIORS3.csv cd $(WORKDIR)/17-09-2054;sed -i "s/^/17-09-2054_pre_ATROPOS_GMM_POSTERIORS3,/" 17-09-2054_pre_ATROPOS_GMM_POSTERIORS3.csv job_17-09-2054_wCSV_pre_ATROPOS_GMM_POSTERIORS4: cd $(WORKDIR)/17-09-2054;c3d 17-09-2054_pre_ATROPOS_GMM_POSTERIORS4.nii.gz 17-09-2054_labels.nii.gz -lstat > 17-09-2054_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/17-09-2054;sed -i "1,2d" 17-09-2054_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/17-09-2054;sed "s/\s\+/,/g" 17-09-2054_pre_ATROPOS_GMM_POSTERIORS4.txt > 17-09-2054_pre_ATROPOS_GMM_POSTERIORS4.csv cd $(WORKDIR)/17-09-2054;sed -i "s/^/17-09-2054_pre_ATROPOS_GMM_POSTERIORS4,/" 17-09-2054_pre_ATROPOS_GMM_POSTERIORS4.csv job_17-09-2054_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO: cd $(WORKDIR)/17-09-2054;c3d 17-09-2054_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.nii.gz 17-09-2054_labels.nii.gz -lstat > 17-09-2054_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/17-09-2054;sed -i "1,2d" 17-09-2054_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/17-09-2054;sed "s/\s\+/,/g" 17-09-2054_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt > 17-09-2054_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv cd $(WORKDIR)/17-09-2054;sed -i "s/^/17-09-2054_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO,/" 17-09-2054_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv job_17-09-2054_wCSV_pre_ENTROPY_RADIUS_1: cd $(WORKDIR)/17-09-2054;c3d 17-09-2054_pre_ENTROPY_RADIUS_1.nii.gz 17-09-2054_labels.nii.gz -lstat > 17-09-2054_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/17-09-2054;sed -i "1,2d" 17-09-2054_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/17-09-2054;sed "s/\s\+/,/g" 17-09-2054_pre_ENTROPY_RADIUS_1.txt > 17-09-2054_pre_ENTROPY_RADIUS_1.csv cd $(WORKDIR)/17-09-2054;sed -i "s/^/17-09-2054_pre_ENTROPY_RADIUS_1,/" 17-09-2054_pre_ENTROPY_RADIUS_1.csv job_17-09-2054_wCSV_pre_ENTROPY_RADIUS_3: cd $(WORKDIR)/17-09-2054;c3d 17-09-2054_pre_ENTROPY_RADIUS_3.nii.gz 17-09-2054_labels.nii.gz -lstat > 17-09-2054_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/17-09-2054;sed -i "1,2d" 17-09-2054_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/17-09-2054;sed "s/\s\+/,/g" 17-09-2054_pre_ENTROPY_RADIUS_3.txt > 17-09-2054_pre_ENTROPY_RADIUS_3.csv cd $(WORKDIR)/17-09-2054;sed -i "s/^/17-09-2054_pre_ENTROPY_RADIUS_3,/" 17-09-2054_pre_ENTROPY_RADIUS_3.csv job_17-09-2054_wCSV_pre_MEAN_RADIUS_1: cd $(WORKDIR)/17-09-2054;c3d 17-09-2054_pre_MEAN_RADIUS_1.nii.gz 17-09-2054_labels.nii.gz -lstat > 17-09-2054_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/17-09-2054;sed -i "1,2d" 17-09-2054_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/17-09-2054;sed "s/\s\+/,/g" 17-09-2054_pre_MEAN_RADIUS_1.txt > 17-09-2054_pre_MEAN_RADIUS_1.csv cd $(WORKDIR)/17-09-2054;sed -i "s/^/17-09-2054_pre_MEAN_RADIUS_1,/" 17-09-2054_pre_MEAN_RADIUS_1.csv job_17-09-2054_wCSV_pre_MEAN_RADIUS_3: cd $(WORKDIR)/17-09-2054;c3d 17-09-2054_pre_MEAN_RADIUS_3.nii.gz 17-09-2054_labels.nii.gz -lstat > 17-09-2054_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/17-09-2054;sed -i "1,2d" 17-09-2054_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/17-09-2054;sed "s/\s\+/,/g" 17-09-2054_pre_MEAN_RADIUS_3.txt > 17-09-2054_pre_MEAN_RADIUS_3.csv cd $(WORKDIR)/17-09-2054;sed -i "s/^/17-09-2054_pre_MEAN_RADIUS_3,/" 17-09-2054_pre_MEAN_RADIUS_3.csv job_17-09-2054_wCSV_pre_NORMALIZED: cd $(WORKDIR)/17-09-2054;c3d 17-09-2054_pre_NORMALIZED.nii.gz 17-09-2054_labels.nii.gz -lstat > 17-09-2054_pre_NORMALIZED.txt cd $(WORKDIR)/17-09-2054;sed -i "1,2d" 17-09-2054_pre_NORMALIZED.txt cd $(WORKDIR)/17-09-2054;sed "s/\s\+/,/g" 17-09-2054_pre_NORMALIZED.txt > 17-09-2054_pre_NORMALIZED.csv cd $(WORKDIR)/17-09-2054;sed -i "s/^/17-09-2054_pre_NORMALIZED,/" 17-09-2054_pre_NORMALIZED.csv job_17-09-2054_wCSV_pre_SIGMA_RADIUS_1: cd $(WORKDIR)/17-09-2054;c3d 17-09-2054_pre_SIGMA_RADIUS_1.nii.gz 17-09-2054_labels.nii.gz -lstat > 17-09-2054_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/17-09-2054;sed -i "1,2d" 17-09-2054_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/17-09-2054;sed "s/\s\+/,/g" 17-09-2054_pre_SIGMA_RADIUS_1.txt > 17-09-2054_pre_SIGMA_RADIUS_1.csv cd $(WORKDIR)/17-09-2054;sed -i "s/^/17-09-2054_pre_SIGMA_RADIUS_1,/" 17-09-2054_pre_SIGMA_RADIUS_1.csv job_17-09-2054_wCSV_pre_SIGMA_RADIUS_3: cd $(WORKDIR)/17-09-2054;c3d 17-09-2054_pre_SIGMA_RADIUS_3.nii.gz 17-09-2054_labels.nii.gz -lstat > 17-09-2054_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/17-09-2054;sed -i "1,2d" 17-09-2054_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/17-09-2054;sed "s/\s\+/,/g" 17-09-2054_pre_SIGMA_RADIUS_3.txt > 17-09-2054_pre_SIGMA_RADIUS_3.csv cd $(WORKDIR)/17-09-2054;sed -i "s/^/17-09-2054_pre_SIGMA_RADIUS_3,/" 17-09-2054_pre_SIGMA_RADIUS_3.csv job_17-09-2054_wCSV_pre_SKEWNESS_RADIUS_1: cd $(WORKDIR)/17-09-2054;c3d 17-09-2054_pre_SKEWNESS_RADIUS_1.nii.gz 17-09-2054_labels.nii.gz -lstat > 17-09-2054_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/17-09-2054;sed -i "1,2d" 17-09-2054_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/17-09-2054;sed "s/\s\+/,/g" 17-09-2054_pre_SKEWNESS_RADIUS_1.txt > 17-09-2054_pre_SKEWNESS_RADIUS_1.csv cd $(WORKDIR)/17-09-2054;sed -i "s/^/17-09-2054_pre_SKEWNESS_RADIUS_1,/" 17-09-2054_pre_SKEWNESS_RADIUS_1.csv job_17-09-2054_wCSV_pre_SKEWNESS_RADIUS_3: cd $(WORKDIR)/17-09-2054;c3d 17-09-2054_pre_SKEWNESS_RADIUS_3.nii.gz 17-09-2054_labels.nii.gz -lstat > 17-09-2054_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/17-09-2054;sed -i "1,2d" 17-09-2054_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/17-09-2054;sed "s/\s\+/,/g" 17-09-2054_pre_SKEWNESS_RADIUS_3.txt > 17-09-2054_pre_SKEWNESS_RADIUS_3.csv cd $(WORKDIR)/17-09-2054;sed -i "s/^/17-09-2054_pre_SKEWNESS_RADIUS_3,/" 17-09-2054_pre_SKEWNESS_RADIUS_3.csv job_17-09-2054_wCSV_pre__DIFFERENCE: cd $(WORKDIR)/17-09-2054;c3d 17-09-2054_pre__DIFFERENCE.nii.gz 17-09-2054_labels.nii.gz -lstat > 17-09-2054_pre__DIFFERENCE.txt cd $(WORKDIR)/17-09-2054;sed -i "1,2d" 17-09-2054_pre__DIFFERENCE.txt cd $(WORKDIR)/17-09-2054;sed "s/\s\+/,/g" 17-09-2054_pre__DIFFERENCE.txt > 17-09-2054_pre__DIFFERENCE.csv cd $(WORKDIR)/17-09-2054;sed -i "s/^/17-09-2054_pre__DIFFERENCE,/" 17-09-2054_pre__DIFFERENCE.csv job_18-09-2055_crFI: cd $(WORKDIR)/18-09-2055;c3d 18-09-2055_grey.nii.gz 18-09-2055_labels.nii.gz -copy-transform -o 18-09-2055_labels.nii.gz cd $(WORKDIR)/18-09-2055;c3d 18-09-2055_grey.nii.gz -orient RAI -o 18-09-2055_grey.nii.gz cd $(WORKDIR)/18-09-2055;c3d 18-09-2055_labels.nii.gz -orient RAI -o 18-09-2055_labels.nii.gz cd $(WORKDIR)/18-09-2055;c3d 18-09-2055_labels.nii.gz -binarize -o 18-09-2055_mask.nii.gz cd $(WORKDIR)/18-09-2055;../createFeatureImagesOvary.sh -d 3 -x 18-09-2055_mask.nii.gz -l3 -n pre -a 18-09-2055_grey.nii.gz -f 0x2 -o ./18-09-2055_ -r 1 -r 3 -s 2 -b 4 job_18-09-2055_wCSV_NORMALIZED_DISTANCE: cd $(WORKDIR)/18-09-2055;c3d 18-09-2055_NORMALIZED_DISTANCE.nii.gz 18-09-2055_labels.nii.gz -lstat > 18-09-2055_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/18-09-2055;sed -i "1,2d" 18-09-2055_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/18-09-2055;sed "s/\s\+/,/g" 18-09-2055_NORMALIZED_DISTANCE.txt > 18-09-2055_NORMALIZED_DISTANCE.csv cd $(WORKDIR)/18-09-2055;sed -i "s/^/18-09-2055_NORMALIZED_DISTANCE,/" 18-09-2055_NORMALIZED_DISTANCE.csv job_18-09-2055_wCSV_pre_ATROPOS_GMM: cd $(WORKDIR)/18-09-2055;c3d 18-09-2055_pre_ATROPOS_GMM.nii.gz 18-09-2055_labels.nii.gz -lstat > 18-09-2055_pre_ATROPOS_GMM.txt cd $(WORKDIR)/18-09-2055;sed -i "1,2d" 18-09-2055_pre_ATROPOS_GMM.txt cd $(WORKDIR)/18-09-2055;sed "s/\s\+/,/g" 18-09-2055_pre_ATROPOS_GMM.txt > 18-09-2055_pre_ATROPOS_GMM.csv cd $(WORKDIR)/18-09-2055;sed -i "s/^/18-09-2055_pre_ATROPOS_GMM,/" 18-09-2055_pre_ATROPOS_GMM.csv job_18-09-2055_wCSV_pre_ATROPOS_GMM_ECCENTRICITY: cd $(WORKDIR)/18-09-2055;c3d 18-09-2055_pre_ATROPOS_GMM_ECCENTRICITY.nii.gz 18-09-2055_labels.nii.gz -lstat > 18-09-2055_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/18-09-2055;sed -i "1,2d" 18-09-2055_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/18-09-2055;sed "s/\s\+/,/g" 18-09-2055_pre_ATROPOS_GMM_ECCENTRICITY.txt > 18-09-2055_pre_ATROPOS_GMM_ECCENTRICITY.csv cd $(WORKDIR)/18-09-2055;sed -i "s/^/18-09-2055_pre_ATROPOS_GMM_ECCENTRICITY,/" 18-09-2055_pre_ATROPOS_GMM_ECCENTRICITY.csv job_18-09-2055_wCSV_pre_ATROPOS_GMM_ELONGATION: cd $(WORKDIR)/18-09-2055;c3d 18-09-2055_pre_ATROPOS_GMM_ELONGATION.nii.gz 18-09-2055_labels.nii.gz -lstat > 18-09-2055_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/18-09-2055;sed -i "1,2d" 18-09-2055_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/18-09-2055;sed "s/\s\+/,/g" 18-09-2055_pre_ATROPOS_GMM_ELONGATION.txt > 18-09-2055_pre_ATROPOS_GMM_ELONGATION.csv cd $(WORKDIR)/18-09-2055;sed -i "s/^/18-09-2055_pre_ATROPOS_GMM_ELONGATION,/" 18-09-2055_pre_ATROPOS_GMM_ELONGATION.csv job_18-09-2055_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE: cd $(WORKDIR)/18-09-2055;c3d 18-09-2055_pre_ATROPOS_GMM_LABEL3_DISTANCE.nii.gz 18-09-2055_labels.nii.gz -lstat > 18-09-2055_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/18-09-2055;sed -i "1,2d" 18-09-2055_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/18-09-2055;sed "s/\s\+/,/g" 18-09-2055_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt > 18-09-2055_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv cd $(WORKDIR)/18-09-2055;sed -i "s/^/18-09-2055_pre_ATROPOS_GMM_LABEL3_DISTANCE,/" 18-09-2055_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv job_18-09-2055_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME: cd $(WORKDIR)/18-09-2055;c3d 18-09-2055_pre_ATROPOS_GMM_PHYSICAL_VOLUME.nii.gz 18-09-2055_labels.nii.gz -lstat > 18-09-2055_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/18-09-2055;sed -i "1,2d" 18-09-2055_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/18-09-2055;sed "s/\s\+/,/g" 18-09-2055_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt > 18-09-2055_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv cd $(WORKDIR)/18-09-2055;sed -i "s/^/18-09-2055_pre_ATROPOS_GMM_PHYSICAL_VOLUME,/" 18-09-2055_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv job_18-09-2055_wCSV_pre_ATROPOS_GMM_POSTERIORS1: cd $(WORKDIR)/18-09-2055;c3d 18-09-2055_pre_ATROPOS_GMM_POSTERIORS1.nii.gz 18-09-2055_labels.nii.gz -lstat > 18-09-2055_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/18-09-2055;sed -i "1,2d" 18-09-2055_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/18-09-2055;sed "s/\s\+/,/g" 18-09-2055_pre_ATROPOS_GMM_POSTERIORS1.txt > 18-09-2055_pre_ATROPOS_GMM_POSTERIORS1.csv cd $(WORKDIR)/18-09-2055;sed -i "s/^/18-09-2055_pre_ATROPOS_GMM_POSTERIORS1,/" 18-09-2055_pre_ATROPOS_GMM_POSTERIORS1.csv job_18-09-2055_wCSV_pre_ATROPOS_GMM_POSTERIORS2: cd $(WORKDIR)/18-09-2055;c3d 18-09-2055_pre_ATROPOS_GMM_POSTERIORS2.nii.gz 18-09-2055_labels.nii.gz -lstat > 18-09-2055_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/18-09-2055;sed -i "1,2d" 18-09-2055_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/18-09-2055;sed "s/\s\+/,/g" 18-09-2055_pre_ATROPOS_GMM_POSTERIORS2.txt > 18-09-2055_pre_ATROPOS_GMM_POSTERIORS2.csv cd $(WORKDIR)/18-09-2055;sed -i "s/^/18-09-2055_pre_ATROPOS_GMM_POSTERIORS2,/" 18-09-2055_pre_ATROPOS_GMM_POSTERIORS2.csv job_18-09-2055_wCSV_pre_ATROPOS_GMM_POSTERIORS3: cd $(WORKDIR)/18-09-2055;c3d 18-09-2055_pre_ATROPOS_GMM_POSTERIORS3.nii.gz 18-09-2055_labels.nii.gz -lstat > 18-09-2055_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/18-09-2055;sed -i "1,2d" 18-09-2055_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/18-09-2055;sed "s/\s\+/,/g" 18-09-2055_pre_ATROPOS_GMM_POSTERIORS3.txt > 18-09-2055_pre_ATROPOS_GMM_POSTERIORS3.csv cd $(WORKDIR)/18-09-2055;sed -i "s/^/18-09-2055_pre_ATROPOS_GMM_POSTERIORS3,/" 18-09-2055_pre_ATROPOS_GMM_POSTERIORS3.csv job_18-09-2055_wCSV_pre_ATROPOS_GMM_POSTERIORS4: cd $(WORKDIR)/18-09-2055;c3d 18-09-2055_pre_ATROPOS_GMM_POSTERIORS4.nii.gz 18-09-2055_labels.nii.gz -lstat > 18-09-2055_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/18-09-2055;sed -i "1,2d" 18-09-2055_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/18-09-2055;sed "s/\s\+/,/g" 18-09-2055_pre_ATROPOS_GMM_POSTERIORS4.txt > 18-09-2055_pre_ATROPOS_GMM_POSTERIORS4.csv cd $(WORKDIR)/18-09-2055;sed -i "s/^/18-09-2055_pre_ATROPOS_GMM_POSTERIORS4,/" 18-09-2055_pre_ATROPOS_GMM_POSTERIORS4.csv job_18-09-2055_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO: cd $(WORKDIR)/18-09-2055;c3d 18-09-2055_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.nii.gz 18-09-2055_labels.nii.gz -lstat > 18-09-2055_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/18-09-2055;sed -i "1,2d" 18-09-2055_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/18-09-2055;sed "s/\s\+/,/g" 18-09-2055_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt > 18-09-2055_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv cd $(WORKDIR)/18-09-2055;sed -i "s/^/18-09-2055_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO,/" 18-09-2055_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv job_18-09-2055_wCSV_pre_ENTROPY_RADIUS_1: cd $(WORKDIR)/18-09-2055;c3d 18-09-2055_pre_ENTROPY_RADIUS_1.nii.gz 18-09-2055_labels.nii.gz -lstat > 18-09-2055_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/18-09-2055;sed -i "1,2d" 18-09-2055_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/18-09-2055;sed "s/\s\+/,/g" 18-09-2055_pre_ENTROPY_RADIUS_1.txt > 18-09-2055_pre_ENTROPY_RADIUS_1.csv cd $(WORKDIR)/18-09-2055;sed -i "s/^/18-09-2055_pre_ENTROPY_RADIUS_1,/" 18-09-2055_pre_ENTROPY_RADIUS_1.csv job_18-09-2055_wCSV_pre_ENTROPY_RADIUS_3: cd $(WORKDIR)/18-09-2055;c3d 18-09-2055_pre_ENTROPY_RADIUS_3.nii.gz 18-09-2055_labels.nii.gz -lstat > 18-09-2055_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/18-09-2055;sed -i "1,2d" 18-09-2055_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/18-09-2055;sed "s/\s\+/,/g" 18-09-2055_pre_ENTROPY_RADIUS_3.txt > 18-09-2055_pre_ENTROPY_RADIUS_3.csv cd $(WORKDIR)/18-09-2055;sed -i "s/^/18-09-2055_pre_ENTROPY_RADIUS_3,/" 18-09-2055_pre_ENTROPY_RADIUS_3.csv job_18-09-2055_wCSV_pre_MEAN_RADIUS_1: cd $(WORKDIR)/18-09-2055;c3d 18-09-2055_pre_MEAN_RADIUS_1.nii.gz 18-09-2055_labels.nii.gz -lstat > 18-09-2055_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/18-09-2055;sed -i "1,2d" 18-09-2055_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/18-09-2055;sed "s/\s\+/,/g" 18-09-2055_pre_MEAN_RADIUS_1.txt > 18-09-2055_pre_MEAN_RADIUS_1.csv cd $(WORKDIR)/18-09-2055;sed -i "s/^/18-09-2055_pre_MEAN_RADIUS_1,/" 18-09-2055_pre_MEAN_RADIUS_1.csv job_18-09-2055_wCSV_pre_MEAN_RADIUS_3: cd $(WORKDIR)/18-09-2055;c3d 18-09-2055_pre_MEAN_RADIUS_3.nii.gz 18-09-2055_labels.nii.gz -lstat > 18-09-2055_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/18-09-2055;sed -i "1,2d" 18-09-2055_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/18-09-2055;sed "s/\s\+/,/g" 18-09-2055_pre_MEAN_RADIUS_3.txt > 18-09-2055_pre_MEAN_RADIUS_3.csv cd $(WORKDIR)/18-09-2055;sed -i "s/^/18-09-2055_pre_MEAN_RADIUS_3,/" 18-09-2055_pre_MEAN_RADIUS_3.csv job_18-09-2055_wCSV_pre_NORMALIZED: cd $(WORKDIR)/18-09-2055;c3d 18-09-2055_pre_NORMALIZED.nii.gz 18-09-2055_labels.nii.gz -lstat > 18-09-2055_pre_NORMALIZED.txt cd $(WORKDIR)/18-09-2055;sed -i "1,2d" 18-09-2055_pre_NORMALIZED.txt cd $(WORKDIR)/18-09-2055;sed "s/\s\+/,/g" 18-09-2055_pre_NORMALIZED.txt > 18-09-2055_pre_NORMALIZED.csv cd $(WORKDIR)/18-09-2055;sed -i "s/^/18-09-2055_pre_NORMALIZED,/" 18-09-2055_pre_NORMALIZED.csv job_18-09-2055_wCSV_pre_SIGMA_RADIUS_1: cd $(WORKDIR)/18-09-2055;c3d 18-09-2055_pre_SIGMA_RADIUS_1.nii.gz 18-09-2055_labels.nii.gz -lstat > 18-09-2055_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/18-09-2055;sed -i "1,2d" 18-09-2055_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/18-09-2055;sed "s/\s\+/,/g" 18-09-2055_pre_SIGMA_RADIUS_1.txt > 18-09-2055_pre_SIGMA_RADIUS_1.csv cd $(WORKDIR)/18-09-2055;sed -i "s/^/18-09-2055_pre_SIGMA_RADIUS_1,/" 18-09-2055_pre_SIGMA_RADIUS_1.csv job_18-09-2055_wCSV_pre_SIGMA_RADIUS_3: cd $(WORKDIR)/18-09-2055;c3d 18-09-2055_pre_SIGMA_RADIUS_3.nii.gz 18-09-2055_labels.nii.gz -lstat > 18-09-2055_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/18-09-2055;sed -i "1,2d" 18-09-2055_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/18-09-2055;sed "s/\s\+/,/g" 18-09-2055_pre_SIGMA_RADIUS_3.txt > 18-09-2055_pre_SIGMA_RADIUS_3.csv cd $(WORKDIR)/18-09-2055;sed -i "s/^/18-09-2055_pre_SIGMA_RADIUS_3,/" 18-09-2055_pre_SIGMA_RADIUS_3.csv job_18-09-2055_wCSV_pre_SKEWNESS_RADIUS_1: cd $(WORKDIR)/18-09-2055;c3d 18-09-2055_pre_SKEWNESS_RADIUS_1.nii.gz 18-09-2055_labels.nii.gz -lstat > 18-09-2055_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/18-09-2055;sed -i "1,2d" 18-09-2055_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/18-09-2055;sed "s/\s\+/,/g" 18-09-2055_pre_SKEWNESS_RADIUS_1.txt > 18-09-2055_pre_SKEWNESS_RADIUS_1.csv cd $(WORKDIR)/18-09-2055;sed -i "s/^/18-09-2055_pre_SKEWNESS_RADIUS_1,/" 18-09-2055_pre_SKEWNESS_RADIUS_1.csv job_18-09-2055_wCSV_pre_SKEWNESS_RADIUS_3: cd $(WORKDIR)/18-09-2055;c3d 18-09-2055_pre_SKEWNESS_RADIUS_3.nii.gz 18-09-2055_labels.nii.gz -lstat > 18-09-2055_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/18-09-2055;sed -i "1,2d" 18-09-2055_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/18-09-2055;sed "s/\s\+/,/g" 18-09-2055_pre_SKEWNESS_RADIUS_3.txt > 18-09-2055_pre_SKEWNESS_RADIUS_3.csv cd $(WORKDIR)/18-09-2055;sed -i "s/^/18-09-2055_pre_SKEWNESS_RADIUS_3,/" 18-09-2055_pre_SKEWNESS_RADIUS_3.csv job_18-09-2055_wCSV_pre__DIFFERENCE: cd $(WORKDIR)/18-09-2055;c3d 18-09-2055_pre__DIFFERENCE.nii.gz 18-09-2055_labels.nii.gz -lstat > 18-09-2055_pre__DIFFERENCE.txt cd $(WORKDIR)/18-09-2055;sed -i "1,2d" 18-09-2055_pre__DIFFERENCE.txt cd $(WORKDIR)/18-09-2055;sed "s/\s\+/,/g" 18-09-2055_pre__DIFFERENCE.txt > 18-09-2055_pre__DIFFERENCE.csv cd $(WORKDIR)/18-09-2055;sed -i "s/^/18-09-2055_pre__DIFFERENCE,/" 18-09-2055_pre__DIFFERENCE.csv job_19-13-0720_crFI: cd $(WORKDIR)/19-13-0720;c3d 19-13-0720_grey.nii.gz 19-13-0720_labels.nii.gz -copy-transform -o 19-13-0720_labels.nii.gz cd $(WORKDIR)/19-13-0720;c3d 19-13-0720_grey.nii.gz -orient RAI -o 19-13-0720_grey.nii.gz cd $(WORKDIR)/19-13-0720;c3d 19-13-0720_labels.nii.gz -orient RAI -o 19-13-0720_labels.nii.gz cd $(WORKDIR)/19-13-0720;c3d 19-13-0720_labels.nii.gz -binarize -o 19-13-0720_mask.nii.gz cd $(WORKDIR)/19-13-0720;../createFeatureImagesOvary.sh -d 3 -x 19-13-0720_mask.nii.gz -l3 -n pre -a 19-13-0720_grey.nii.gz -f 0x2 -o ./19-13-0720_ -r 1 -r 3 -s 2 -b 4 job_19-13-0720_wCSV_NORMALIZED_DISTANCE: cd $(WORKDIR)/19-13-0720;c3d 19-13-0720_NORMALIZED_DISTANCE.nii.gz 19-13-0720_labels.nii.gz -lstat > 19-13-0720_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/19-13-0720;sed -i "1,2d" 19-13-0720_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/19-13-0720;sed "s/\s\+/,/g" 19-13-0720_NORMALIZED_DISTANCE.txt > 19-13-0720_NORMALIZED_DISTANCE.csv cd $(WORKDIR)/19-13-0720;sed -i "s/^/19-13-0720_NORMALIZED_DISTANCE,/" 19-13-0720_NORMALIZED_DISTANCE.csv job_19-13-0720_wCSV_pre_ATROPOS_GMM: cd $(WORKDIR)/19-13-0720;c3d 19-13-0720_pre_ATROPOS_GMM.nii.gz 19-13-0720_labels.nii.gz -lstat > 19-13-0720_pre_ATROPOS_GMM.txt cd $(WORKDIR)/19-13-0720;sed -i "1,2d" 19-13-0720_pre_ATROPOS_GMM.txt cd $(WORKDIR)/19-13-0720;sed "s/\s\+/,/g" 19-13-0720_pre_ATROPOS_GMM.txt > 19-13-0720_pre_ATROPOS_GMM.csv cd $(WORKDIR)/19-13-0720;sed -i "s/^/19-13-0720_pre_ATROPOS_GMM,/" 19-13-0720_pre_ATROPOS_GMM.csv job_19-13-0720_wCSV_pre_ATROPOS_GMM_ECCENTRICITY: cd $(WORKDIR)/19-13-0720;c3d 19-13-0720_pre_ATROPOS_GMM_ECCENTRICITY.nii.gz 19-13-0720_labels.nii.gz -lstat > 19-13-0720_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/19-13-0720;sed -i "1,2d" 19-13-0720_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/19-13-0720;sed "s/\s\+/,/g" 19-13-0720_pre_ATROPOS_GMM_ECCENTRICITY.txt > 19-13-0720_pre_ATROPOS_GMM_ECCENTRICITY.csv cd $(WORKDIR)/19-13-0720;sed -i "s/^/19-13-0720_pre_ATROPOS_GMM_ECCENTRICITY,/" 19-13-0720_pre_ATROPOS_GMM_ECCENTRICITY.csv job_19-13-0720_wCSV_pre_ATROPOS_GMM_ELONGATION: cd $(WORKDIR)/19-13-0720;c3d 19-13-0720_pre_ATROPOS_GMM_ELONGATION.nii.gz 19-13-0720_labels.nii.gz -lstat > 19-13-0720_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/19-13-0720;sed -i "1,2d" 19-13-0720_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/19-13-0720;sed "s/\s\+/,/g" 19-13-0720_pre_ATROPOS_GMM_ELONGATION.txt > 19-13-0720_pre_ATROPOS_GMM_ELONGATION.csv cd $(WORKDIR)/19-13-0720;sed -i "s/^/19-13-0720_pre_ATROPOS_GMM_ELONGATION,/" 19-13-0720_pre_ATROPOS_GMM_ELONGATION.csv job_19-13-0720_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE: cd $(WORKDIR)/19-13-0720;c3d 19-13-0720_pre_ATROPOS_GMM_LABEL3_DISTANCE.nii.gz 19-13-0720_labels.nii.gz -lstat > 19-13-0720_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/19-13-0720;sed -i "1,2d" 19-13-0720_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/19-13-0720;sed "s/\s\+/,/g" 19-13-0720_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt > 19-13-0720_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv cd $(WORKDIR)/19-13-0720;sed -i "s/^/19-13-0720_pre_ATROPOS_GMM_LABEL3_DISTANCE,/" 19-13-0720_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv job_19-13-0720_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME: cd $(WORKDIR)/19-13-0720;c3d 19-13-0720_pre_ATROPOS_GMM_PHYSICAL_VOLUME.nii.gz 19-13-0720_labels.nii.gz -lstat > 19-13-0720_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/19-13-0720;sed -i "1,2d" 19-13-0720_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/19-13-0720;sed "s/\s\+/,/g" 19-13-0720_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt > 19-13-0720_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv cd $(WORKDIR)/19-13-0720;sed -i "s/^/19-13-0720_pre_ATROPOS_GMM_PHYSICAL_VOLUME,/" 19-13-0720_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv job_19-13-0720_wCSV_pre_ATROPOS_GMM_POSTERIORS1: cd $(WORKDIR)/19-13-0720;c3d 19-13-0720_pre_ATROPOS_GMM_POSTERIORS1.nii.gz 19-13-0720_labels.nii.gz -lstat > 19-13-0720_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/19-13-0720;sed -i "1,2d" 19-13-0720_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/19-13-0720;sed "s/\s\+/,/g" 19-13-0720_pre_ATROPOS_GMM_POSTERIORS1.txt > 19-13-0720_pre_ATROPOS_GMM_POSTERIORS1.csv cd $(WORKDIR)/19-13-0720;sed -i "s/^/19-13-0720_pre_ATROPOS_GMM_POSTERIORS1,/" 19-13-0720_pre_ATROPOS_GMM_POSTERIORS1.csv job_19-13-0720_wCSV_pre_ATROPOS_GMM_POSTERIORS2: cd $(WORKDIR)/19-13-0720;c3d 19-13-0720_pre_ATROPOS_GMM_POSTERIORS2.nii.gz 19-13-0720_labels.nii.gz -lstat > 19-13-0720_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/19-13-0720;sed -i "1,2d" 19-13-0720_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/19-13-0720;sed "s/\s\+/,/g" 19-13-0720_pre_ATROPOS_GMM_POSTERIORS2.txt > 19-13-0720_pre_ATROPOS_GMM_POSTERIORS2.csv cd $(WORKDIR)/19-13-0720;sed -i "s/^/19-13-0720_pre_ATROPOS_GMM_POSTERIORS2,/" 19-13-0720_pre_ATROPOS_GMM_POSTERIORS2.csv job_19-13-0720_wCSV_pre_ATROPOS_GMM_POSTERIORS3: cd $(WORKDIR)/19-13-0720;c3d 19-13-0720_pre_ATROPOS_GMM_POSTERIORS3.nii.gz 19-13-0720_labels.nii.gz -lstat > 19-13-0720_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/19-13-0720;sed -i "1,2d" 19-13-0720_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/19-13-0720;sed "s/\s\+/,/g" 19-13-0720_pre_ATROPOS_GMM_POSTERIORS3.txt > 19-13-0720_pre_ATROPOS_GMM_POSTERIORS3.csv cd $(WORKDIR)/19-13-0720;sed -i "s/^/19-13-0720_pre_ATROPOS_GMM_POSTERIORS3,/" 19-13-0720_pre_ATROPOS_GMM_POSTERIORS3.csv job_19-13-0720_wCSV_pre_ATROPOS_GMM_POSTERIORS4: cd $(WORKDIR)/19-13-0720;c3d 19-13-0720_pre_ATROPOS_GMM_POSTERIORS4.nii.gz 19-13-0720_labels.nii.gz -lstat > 19-13-0720_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/19-13-0720;sed -i "1,2d" 19-13-0720_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/19-13-0720;sed "s/\s\+/,/g" 19-13-0720_pre_ATROPOS_GMM_POSTERIORS4.txt > 19-13-0720_pre_ATROPOS_GMM_POSTERIORS4.csv cd $(WORKDIR)/19-13-0720;sed -i "s/^/19-13-0720_pre_ATROPOS_GMM_POSTERIORS4,/" 19-13-0720_pre_ATROPOS_GMM_POSTERIORS4.csv job_19-13-0720_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO: cd $(WORKDIR)/19-13-0720;c3d 19-13-0720_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.nii.gz 19-13-0720_labels.nii.gz -lstat > 19-13-0720_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/19-13-0720;sed -i "1,2d" 19-13-0720_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/19-13-0720;sed "s/\s\+/,/g" 19-13-0720_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt > 19-13-0720_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv cd $(WORKDIR)/19-13-0720;sed -i "s/^/19-13-0720_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO,/" 19-13-0720_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv job_19-13-0720_wCSV_pre_ENTROPY_RADIUS_1: cd $(WORKDIR)/19-13-0720;c3d 19-13-0720_pre_ENTROPY_RADIUS_1.nii.gz 19-13-0720_labels.nii.gz -lstat > 19-13-0720_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/19-13-0720;sed -i "1,2d" 19-13-0720_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/19-13-0720;sed "s/\s\+/,/g" 19-13-0720_pre_ENTROPY_RADIUS_1.txt > 19-13-0720_pre_ENTROPY_RADIUS_1.csv cd $(WORKDIR)/19-13-0720;sed -i "s/^/19-13-0720_pre_ENTROPY_RADIUS_1,/" 19-13-0720_pre_ENTROPY_RADIUS_1.csv job_19-13-0720_wCSV_pre_ENTROPY_RADIUS_3: cd $(WORKDIR)/19-13-0720;c3d 19-13-0720_pre_ENTROPY_RADIUS_3.nii.gz 19-13-0720_labels.nii.gz -lstat > 19-13-0720_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/19-13-0720;sed -i "1,2d" 19-13-0720_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/19-13-0720;sed "s/\s\+/,/g" 19-13-0720_pre_ENTROPY_RADIUS_3.txt > 19-13-0720_pre_ENTROPY_RADIUS_3.csv cd $(WORKDIR)/19-13-0720;sed -i "s/^/19-13-0720_pre_ENTROPY_RADIUS_3,/" 19-13-0720_pre_ENTROPY_RADIUS_3.csv job_19-13-0720_wCSV_pre_MEAN_RADIUS_1: cd $(WORKDIR)/19-13-0720;c3d 19-13-0720_pre_MEAN_RADIUS_1.nii.gz 19-13-0720_labels.nii.gz -lstat > 19-13-0720_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/19-13-0720;sed -i "1,2d" 19-13-0720_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/19-13-0720;sed "s/\s\+/,/g" 19-13-0720_pre_MEAN_RADIUS_1.txt > 19-13-0720_pre_MEAN_RADIUS_1.csv cd $(WORKDIR)/19-13-0720;sed -i "s/^/19-13-0720_pre_MEAN_RADIUS_1,/" 19-13-0720_pre_MEAN_RADIUS_1.csv job_19-13-0720_wCSV_pre_MEAN_RADIUS_3: cd $(WORKDIR)/19-13-0720;c3d 19-13-0720_pre_MEAN_RADIUS_3.nii.gz 19-13-0720_labels.nii.gz -lstat > 19-13-0720_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/19-13-0720;sed -i "1,2d" 19-13-0720_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/19-13-0720;sed "s/\s\+/,/g" 19-13-0720_pre_MEAN_RADIUS_3.txt > 19-13-0720_pre_MEAN_RADIUS_3.csv cd $(WORKDIR)/19-13-0720;sed -i "s/^/19-13-0720_pre_MEAN_RADIUS_3,/" 19-13-0720_pre_MEAN_RADIUS_3.csv job_19-13-0720_wCSV_pre_NORMALIZED: cd $(WORKDIR)/19-13-0720;c3d 19-13-0720_pre_NORMALIZED.nii.gz 19-13-0720_labels.nii.gz -lstat > 19-13-0720_pre_NORMALIZED.txt cd $(WORKDIR)/19-13-0720;sed -i "1,2d" 19-13-0720_pre_NORMALIZED.txt cd $(WORKDIR)/19-13-0720;sed "s/\s\+/,/g" 19-13-0720_pre_NORMALIZED.txt > 19-13-0720_pre_NORMALIZED.csv cd $(WORKDIR)/19-13-0720;sed -i "s/^/19-13-0720_pre_NORMALIZED,/" 19-13-0720_pre_NORMALIZED.csv job_19-13-0720_wCSV_pre_SIGMA_RADIUS_1: cd $(WORKDIR)/19-13-0720;c3d 19-13-0720_pre_SIGMA_RADIUS_1.nii.gz 19-13-0720_labels.nii.gz -lstat > 19-13-0720_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/19-13-0720;sed -i "1,2d" 19-13-0720_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/19-13-0720;sed "s/\s\+/,/g" 19-13-0720_pre_SIGMA_RADIUS_1.txt > 19-13-0720_pre_SIGMA_RADIUS_1.csv cd $(WORKDIR)/19-13-0720;sed -i "s/^/19-13-0720_pre_SIGMA_RADIUS_1,/" 19-13-0720_pre_SIGMA_RADIUS_1.csv job_19-13-0720_wCSV_pre_SIGMA_RADIUS_3: cd $(WORKDIR)/19-13-0720;c3d 19-13-0720_pre_SIGMA_RADIUS_3.nii.gz 19-13-0720_labels.nii.gz -lstat > 19-13-0720_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/19-13-0720;sed -i "1,2d" 19-13-0720_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/19-13-0720;sed "s/\s\+/,/g" 19-13-0720_pre_SIGMA_RADIUS_3.txt > 19-13-0720_pre_SIGMA_RADIUS_3.csv cd $(WORKDIR)/19-13-0720;sed -i "s/^/19-13-0720_pre_SIGMA_RADIUS_3,/" 19-13-0720_pre_SIGMA_RADIUS_3.csv job_19-13-0720_wCSV_pre_SKEWNESS_RADIUS_1: cd $(WORKDIR)/19-13-0720;c3d 19-13-0720_pre_SKEWNESS_RADIUS_1.nii.gz 19-13-0720_labels.nii.gz -lstat > 19-13-0720_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/19-13-0720;sed -i "1,2d" 19-13-0720_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/19-13-0720;sed "s/\s\+/,/g" 19-13-0720_pre_SKEWNESS_RADIUS_1.txt > 19-13-0720_pre_SKEWNESS_RADIUS_1.csv cd $(WORKDIR)/19-13-0720;sed -i "s/^/19-13-0720_pre_SKEWNESS_RADIUS_1,/" 19-13-0720_pre_SKEWNESS_RADIUS_1.csv job_19-13-0720_wCSV_pre_SKEWNESS_RADIUS_3: cd $(WORKDIR)/19-13-0720;c3d 19-13-0720_pre_SKEWNESS_RADIUS_3.nii.gz 19-13-0720_labels.nii.gz -lstat > 19-13-0720_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/19-13-0720;sed -i "1,2d" 19-13-0720_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/19-13-0720;sed "s/\s\+/,/g" 19-13-0720_pre_SKEWNESS_RADIUS_3.txt > 19-13-0720_pre_SKEWNESS_RADIUS_3.csv cd $(WORKDIR)/19-13-0720;sed -i "s/^/19-13-0720_pre_SKEWNESS_RADIUS_3,/" 19-13-0720_pre_SKEWNESS_RADIUS_3.csv job_19-13-0720_wCSV_pre__DIFFERENCE: cd $(WORKDIR)/19-13-0720;c3d 19-13-0720_pre__DIFFERENCE.nii.gz 19-13-0720_labels.nii.gz -lstat > 19-13-0720_pre__DIFFERENCE.txt cd $(WORKDIR)/19-13-0720;sed -i "1,2d" 19-13-0720_pre__DIFFERENCE.txt cd $(WORKDIR)/19-13-0720;sed "s/\s\+/,/g" 19-13-0720_pre__DIFFERENCE.txt > 19-13-0720_pre__DIFFERENCE.csv cd $(WORKDIR)/19-13-0720;sed -i "s/^/19-13-0720_pre__DIFFERENCE,/" 19-13-0720_pre__DIFFERENCE.csv job_20-13-0724_crFI: cd $(WORKDIR)/20-13-0724;c3d 20-13-0724_grey.nii.gz 20-13-0724_labels.nii.gz -copy-transform -o 20-13-0724_labels.nii.gz cd $(WORKDIR)/20-13-0724;c3d 20-13-0724_grey.nii.gz -orient RAI -o 20-13-0724_grey.nii.gz cd $(WORKDIR)/20-13-0724;c3d 20-13-0724_labels.nii.gz -orient RAI -o 20-13-0724_labels.nii.gz cd $(WORKDIR)/20-13-0724;c3d 20-13-0724_labels.nii.gz -binarize -o 20-13-0724_mask.nii.gz cd $(WORKDIR)/20-13-0724;../createFeatureImagesOvary.sh -d 3 -x 20-13-0724_mask.nii.gz -l3 -n pre -a 20-13-0724_grey.nii.gz -f 0x2 -o ./20-13-0724_ -r 1 -r 3 -s 2 -b 4 job_20-13-0724_wCSV_NORMALIZED_DISTANCE: cd $(WORKDIR)/20-13-0724;c3d 20-13-0724_NORMALIZED_DISTANCE.nii.gz 20-13-0724_labels.nii.gz -lstat > 20-13-0724_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/20-13-0724;sed -i "1,2d" 20-13-0724_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/20-13-0724;sed "s/\s\+/,/g" 20-13-0724_NORMALIZED_DISTANCE.txt > 20-13-0724_NORMALIZED_DISTANCE.csv cd $(WORKDIR)/20-13-0724;sed -i "s/^/20-13-0724_NORMALIZED_DISTANCE,/" 20-13-0724_NORMALIZED_DISTANCE.csv job_20-13-0724_wCSV_pre_ATROPOS_GMM: cd $(WORKDIR)/20-13-0724;c3d 20-13-0724_pre_ATROPOS_GMM.nii.gz 20-13-0724_labels.nii.gz -lstat > 20-13-0724_pre_ATROPOS_GMM.txt cd $(WORKDIR)/20-13-0724;sed -i "1,2d" 20-13-0724_pre_ATROPOS_GMM.txt cd $(WORKDIR)/20-13-0724;sed "s/\s\+/,/g" 20-13-0724_pre_ATROPOS_GMM.txt > 20-13-0724_pre_ATROPOS_GMM.csv cd $(WORKDIR)/20-13-0724;sed -i "s/^/20-13-0724_pre_ATROPOS_GMM,/" 20-13-0724_pre_ATROPOS_GMM.csv job_20-13-0724_wCSV_pre_ATROPOS_GMM_ECCENTRICITY: cd $(WORKDIR)/20-13-0724;c3d 20-13-0724_pre_ATROPOS_GMM_ECCENTRICITY.nii.gz 20-13-0724_labels.nii.gz -lstat > 20-13-0724_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/20-13-0724;sed -i "1,2d" 20-13-0724_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/20-13-0724;sed "s/\s\+/,/g" 20-13-0724_pre_ATROPOS_GMM_ECCENTRICITY.txt > 20-13-0724_pre_ATROPOS_GMM_ECCENTRICITY.csv cd $(WORKDIR)/20-13-0724;sed -i "s/^/20-13-0724_pre_ATROPOS_GMM_ECCENTRICITY,/" 20-13-0724_pre_ATROPOS_GMM_ECCENTRICITY.csv job_20-13-0724_wCSV_pre_ATROPOS_GMM_ELONGATION: cd $(WORKDIR)/20-13-0724;c3d 20-13-0724_pre_ATROPOS_GMM_ELONGATION.nii.gz 20-13-0724_labels.nii.gz -lstat > 20-13-0724_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/20-13-0724;sed -i "1,2d" 20-13-0724_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/20-13-0724;sed "s/\s\+/,/g" 20-13-0724_pre_ATROPOS_GMM_ELONGATION.txt > 20-13-0724_pre_ATROPOS_GMM_ELONGATION.csv cd $(WORKDIR)/20-13-0724;sed -i "s/^/20-13-0724_pre_ATROPOS_GMM_ELONGATION,/" 20-13-0724_pre_ATROPOS_GMM_ELONGATION.csv job_20-13-0724_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE: cd $(WORKDIR)/20-13-0724;c3d 20-13-0724_pre_ATROPOS_GMM_LABEL3_DISTANCE.nii.gz 20-13-0724_labels.nii.gz -lstat > 20-13-0724_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/20-13-0724;sed -i "1,2d" 20-13-0724_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/20-13-0724;sed "s/\s\+/,/g" 20-13-0724_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt > 20-13-0724_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv cd $(WORKDIR)/20-13-0724;sed -i "s/^/20-13-0724_pre_ATROPOS_GMM_LABEL3_DISTANCE,/" 20-13-0724_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv job_20-13-0724_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME: cd $(WORKDIR)/20-13-0724;c3d 20-13-0724_pre_ATROPOS_GMM_PHYSICAL_VOLUME.nii.gz 20-13-0724_labels.nii.gz -lstat > 20-13-0724_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/20-13-0724;sed -i "1,2d" 20-13-0724_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/20-13-0724;sed "s/\s\+/,/g" 20-13-0724_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt > 20-13-0724_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv cd $(WORKDIR)/20-13-0724;sed -i "s/^/20-13-0724_pre_ATROPOS_GMM_PHYSICAL_VOLUME,/" 20-13-0724_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv job_20-13-0724_wCSV_pre_ATROPOS_GMM_POSTERIORS1: cd $(WORKDIR)/20-13-0724;c3d 20-13-0724_pre_ATROPOS_GMM_POSTERIORS1.nii.gz 20-13-0724_labels.nii.gz -lstat > 20-13-0724_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/20-13-0724;sed -i "1,2d" 20-13-0724_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/20-13-0724;sed "s/\s\+/,/g" 20-13-0724_pre_ATROPOS_GMM_POSTERIORS1.txt > 20-13-0724_pre_ATROPOS_GMM_POSTERIORS1.csv cd $(WORKDIR)/20-13-0724;sed -i "s/^/20-13-0724_pre_ATROPOS_GMM_POSTERIORS1,/" 20-13-0724_pre_ATROPOS_GMM_POSTERIORS1.csv job_20-13-0724_wCSV_pre_ATROPOS_GMM_POSTERIORS2: cd $(WORKDIR)/20-13-0724;c3d 20-13-0724_pre_ATROPOS_GMM_POSTERIORS2.nii.gz 20-13-0724_labels.nii.gz -lstat > 20-13-0724_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/20-13-0724;sed -i "1,2d" 20-13-0724_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/20-13-0724;sed "s/\s\+/,/g" 20-13-0724_pre_ATROPOS_GMM_POSTERIORS2.txt > 20-13-0724_pre_ATROPOS_GMM_POSTERIORS2.csv cd $(WORKDIR)/20-13-0724;sed -i "s/^/20-13-0724_pre_ATROPOS_GMM_POSTERIORS2,/" 20-13-0724_pre_ATROPOS_GMM_POSTERIORS2.csv job_20-13-0724_wCSV_pre_ATROPOS_GMM_POSTERIORS3: cd $(WORKDIR)/20-13-0724;c3d 20-13-0724_pre_ATROPOS_GMM_POSTERIORS3.nii.gz 20-13-0724_labels.nii.gz -lstat > 20-13-0724_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/20-13-0724;sed -i "1,2d" 20-13-0724_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/20-13-0724;sed "s/\s\+/,/g" 20-13-0724_pre_ATROPOS_GMM_POSTERIORS3.txt > 20-13-0724_pre_ATROPOS_GMM_POSTERIORS3.csv cd $(WORKDIR)/20-13-0724;sed -i "s/^/20-13-0724_pre_ATROPOS_GMM_POSTERIORS3,/" 20-13-0724_pre_ATROPOS_GMM_POSTERIORS3.csv job_20-13-0724_wCSV_pre_ATROPOS_GMM_POSTERIORS4: cd $(WORKDIR)/20-13-0724;c3d 20-13-0724_pre_ATROPOS_GMM_POSTERIORS4.nii.gz 20-13-0724_labels.nii.gz -lstat > 20-13-0724_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/20-13-0724;sed -i "1,2d" 20-13-0724_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/20-13-0724;sed "s/\s\+/,/g" 20-13-0724_pre_ATROPOS_GMM_POSTERIORS4.txt > 20-13-0724_pre_ATROPOS_GMM_POSTERIORS4.csv cd $(WORKDIR)/20-13-0724;sed -i "s/^/20-13-0724_pre_ATROPOS_GMM_POSTERIORS4,/" 20-13-0724_pre_ATROPOS_GMM_POSTERIORS4.csv job_20-13-0724_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO: cd $(WORKDIR)/20-13-0724;c3d 20-13-0724_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.nii.gz 20-13-0724_labels.nii.gz -lstat > 20-13-0724_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/20-13-0724;sed -i "1,2d" 20-13-0724_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/20-13-0724;sed "s/\s\+/,/g" 20-13-0724_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt > 20-13-0724_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv cd $(WORKDIR)/20-13-0724;sed -i "s/^/20-13-0724_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO,/" 20-13-0724_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv job_20-13-0724_wCSV_pre_ENTROPY_RADIUS_1: cd $(WORKDIR)/20-13-0724;c3d 20-13-0724_pre_ENTROPY_RADIUS_1.nii.gz 20-13-0724_labels.nii.gz -lstat > 20-13-0724_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/20-13-0724;sed -i "1,2d" 20-13-0724_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/20-13-0724;sed "s/\s\+/,/g" 20-13-0724_pre_ENTROPY_RADIUS_1.txt > 20-13-0724_pre_ENTROPY_RADIUS_1.csv cd $(WORKDIR)/20-13-0724;sed -i "s/^/20-13-0724_pre_ENTROPY_RADIUS_1,/" 20-13-0724_pre_ENTROPY_RADIUS_1.csv job_20-13-0724_wCSV_pre_ENTROPY_RADIUS_3: cd $(WORKDIR)/20-13-0724;c3d 20-13-0724_pre_ENTROPY_RADIUS_3.nii.gz 20-13-0724_labels.nii.gz -lstat > 20-13-0724_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/20-13-0724;sed -i "1,2d" 20-13-0724_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/20-13-0724;sed "s/\s\+/,/g" 20-13-0724_pre_ENTROPY_RADIUS_3.txt > 20-13-0724_pre_ENTROPY_RADIUS_3.csv cd $(WORKDIR)/20-13-0724;sed -i "s/^/20-13-0724_pre_ENTROPY_RADIUS_3,/" 20-13-0724_pre_ENTROPY_RADIUS_3.csv job_20-13-0724_wCSV_pre_MEAN_RADIUS_1: cd $(WORKDIR)/20-13-0724;c3d 20-13-0724_pre_MEAN_RADIUS_1.nii.gz 20-13-0724_labels.nii.gz -lstat > 20-13-0724_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/20-13-0724;sed -i "1,2d" 20-13-0724_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/20-13-0724;sed "s/\s\+/,/g" 20-13-0724_pre_MEAN_RADIUS_1.txt > 20-13-0724_pre_MEAN_RADIUS_1.csv cd $(WORKDIR)/20-13-0724;sed -i "s/^/20-13-0724_pre_MEAN_RADIUS_1,/" 20-13-0724_pre_MEAN_RADIUS_1.csv job_20-13-0724_wCSV_pre_MEAN_RADIUS_3: cd $(WORKDIR)/20-13-0724;c3d 20-13-0724_pre_MEAN_RADIUS_3.nii.gz 20-13-0724_labels.nii.gz -lstat > 20-13-0724_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/20-13-0724;sed -i "1,2d" 20-13-0724_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/20-13-0724;sed "s/\s\+/,/g" 20-13-0724_pre_MEAN_RADIUS_3.txt > 20-13-0724_pre_MEAN_RADIUS_3.csv cd $(WORKDIR)/20-13-0724;sed -i "s/^/20-13-0724_pre_MEAN_RADIUS_3,/" 20-13-0724_pre_MEAN_RADIUS_3.csv job_20-13-0724_wCSV_pre_NORMALIZED: cd $(WORKDIR)/20-13-0724;c3d 20-13-0724_pre_NORMALIZED.nii.gz 20-13-0724_labels.nii.gz -lstat > 20-13-0724_pre_NORMALIZED.txt cd $(WORKDIR)/20-13-0724;sed -i "1,2d" 20-13-0724_pre_NORMALIZED.txt cd $(WORKDIR)/20-13-0724;sed "s/\s\+/,/g" 20-13-0724_pre_NORMALIZED.txt > 20-13-0724_pre_NORMALIZED.csv cd $(WORKDIR)/20-13-0724;sed -i "s/^/20-13-0724_pre_NORMALIZED,/" 20-13-0724_pre_NORMALIZED.csv job_20-13-0724_wCSV_pre_SIGMA_RADIUS_1: cd $(WORKDIR)/20-13-0724;c3d 20-13-0724_pre_SIGMA_RADIUS_1.nii.gz 20-13-0724_labels.nii.gz -lstat > 20-13-0724_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/20-13-0724;sed -i "1,2d" 20-13-0724_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/20-13-0724;sed "s/\s\+/,/g" 20-13-0724_pre_SIGMA_RADIUS_1.txt > 20-13-0724_pre_SIGMA_RADIUS_1.csv cd $(WORKDIR)/20-13-0724;sed -i "s/^/20-13-0724_pre_SIGMA_RADIUS_1,/" 20-13-0724_pre_SIGMA_RADIUS_1.csv job_20-13-0724_wCSV_pre_SIGMA_RADIUS_3: cd $(WORKDIR)/20-13-0724;c3d 20-13-0724_pre_SIGMA_RADIUS_3.nii.gz 20-13-0724_labels.nii.gz -lstat > 20-13-0724_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/20-13-0724;sed -i "1,2d" 20-13-0724_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/20-13-0724;sed "s/\s\+/,/g" 20-13-0724_pre_SIGMA_RADIUS_3.txt > 20-13-0724_pre_SIGMA_RADIUS_3.csv cd $(WORKDIR)/20-13-0724;sed -i "s/^/20-13-0724_pre_SIGMA_RADIUS_3,/" 20-13-0724_pre_SIGMA_RADIUS_3.csv job_20-13-0724_wCSV_pre_SKEWNESS_RADIUS_1: cd $(WORKDIR)/20-13-0724;c3d 20-13-0724_pre_SKEWNESS_RADIUS_1.nii.gz 20-13-0724_labels.nii.gz -lstat > 20-13-0724_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/20-13-0724;sed -i "1,2d" 20-13-0724_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/20-13-0724;sed "s/\s\+/,/g" 20-13-0724_pre_SKEWNESS_RADIUS_1.txt > 20-13-0724_pre_SKEWNESS_RADIUS_1.csv cd $(WORKDIR)/20-13-0724;sed -i "s/^/20-13-0724_pre_SKEWNESS_RADIUS_1,/" 20-13-0724_pre_SKEWNESS_RADIUS_1.csv job_20-13-0724_wCSV_pre_SKEWNESS_RADIUS_3: cd $(WORKDIR)/20-13-0724;c3d 20-13-0724_pre_SKEWNESS_RADIUS_3.nii.gz 20-13-0724_labels.nii.gz -lstat > 20-13-0724_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/20-13-0724;sed -i "1,2d" 20-13-0724_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/20-13-0724;sed "s/\s\+/,/g" 20-13-0724_pre_SKEWNESS_RADIUS_3.txt > 20-13-0724_pre_SKEWNESS_RADIUS_3.csv cd $(WORKDIR)/20-13-0724;sed -i "s/^/20-13-0724_pre_SKEWNESS_RADIUS_3,/" 20-13-0724_pre_SKEWNESS_RADIUS_3.csv job_20-13-0724_wCSV_pre__DIFFERENCE: cd $(WORKDIR)/20-13-0724;c3d 20-13-0724_pre__DIFFERENCE.nii.gz 20-13-0724_labels.nii.gz -lstat > 20-13-0724_pre__DIFFERENCE.txt cd $(WORKDIR)/20-13-0724;sed -i "1,2d" 20-13-0724_pre__DIFFERENCE.txt cd $(WORKDIR)/20-13-0724;sed "s/\s\+/,/g" 20-13-0724_pre__DIFFERENCE.txt > 20-13-0724_pre__DIFFERENCE.csv cd $(WORKDIR)/20-13-0724;sed -i "s/^/20-13-0724_pre__DIFFERENCE,/" 20-13-0724_pre__DIFFERENCE.csv job_21-13-0761_crFI: cd $(WORKDIR)/21-13-0761;c3d 21-13-0761_grey.nii.gz 21-13-0761_labels.nii.gz -copy-transform -o 21-13-0761_labels.nii.gz cd $(WORKDIR)/21-13-0761;c3d 21-13-0761_grey.nii.gz -orient RAI -o 21-13-0761_grey.nii.gz cd $(WORKDIR)/21-13-0761;c3d 21-13-0761_labels.nii.gz -orient RAI -o 21-13-0761_labels.nii.gz cd $(WORKDIR)/21-13-0761;c3d 21-13-0761_labels.nii.gz -binarize -o 21-13-0761_mask.nii.gz cd $(WORKDIR)/21-13-0761;../createFeatureImagesOvary.sh -d 3 -x 21-13-0761_mask.nii.gz -l3 -n pre -a 21-13-0761_grey.nii.gz -f 0x2 -o ./21-13-0761_ -r 1 -r 3 -s 2 -b 4 job_21-13-0761_wCSV_NORMALIZED_DISTANCE: cd $(WORKDIR)/21-13-0761;c3d 21-13-0761_NORMALIZED_DISTANCE.nii.gz 21-13-0761_labels.nii.gz -lstat > 21-13-0761_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/21-13-0761;sed -i "1,2d" 21-13-0761_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/21-13-0761;sed "s/\s\+/,/g" 21-13-0761_NORMALIZED_DISTANCE.txt > 21-13-0761_NORMALIZED_DISTANCE.csv cd $(WORKDIR)/21-13-0761;sed -i "s/^/21-13-0761_NORMALIZED_DISTANCE,/" 21-13-0761_NORMALIZED_DISTANCE.csv job_21-13-0761_wCSV_pre_ATROPOS_GMM: cd $(WORKDIR)/21-13-0761;c3d 21-13-0761_pre_ATROPOS_GMM.nii.gz 21-13-0761_labels.nii.gz -lstat > 21-13-0761_pre_ATROPOS_GMM.txt cd $(WORKDIR)/21-13-0761;sed -i "1,2d" 21-13-0761_pre_ATROPOS_GMM.txt cd $(WORKDIR)/21-13-0761;sed "s/\s\+/,/g" 21-13-0761_pre_ATROPOS_GMM.txt > 21-13-0761_pre_ATROPOS_GMM.csv cd $(WORKDIR)/21-13-0761;sed -i "s/^/21-13-0761_pre_ATROPOS_GMM,/" 21-13-0761_pre_ATROPOS_GMM.csv job_21-13-0761_wCSV_pre_ATROPOS_GMM_ECCENTRICITY: cd $(WORKDIR)/21-13-0761;c3d 21-13-0761_pre_ATROPOS_GMM_ECCENTRICITY.nii.gz 21-13-0761_labels.nii.gz -lstat > 21-13-0761_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/21-13-0761;sed -i "1,2d" 21-13-0761_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/21-13-0761;sed "s/\s\+/,/g" 21-13-0761_pre_ATROPOS_GMM_ECCENTRICITY.txt > 21-13-0761_pre_ATROPOS_GMM_ECCENTRICITY.csv cd $(WORKDIR)/21-13-0761;sed -i "s/^/21-13-0761_pre_ATROPOS_GMM_ECCENTRICITY,/" 21-13-0761_pre_ATROPOS_GMM_ECCENTRICITY.csv job_21-13-0761_wCSV_pre_ATROPOS_GMM_ELONGATION: cd $(WORKDIR)/21-13-0761;c3d 21-13-0761_pre_ATROPOS_GMM_ELONGATION.nii.gz 21-13-0761_labels.nii.gz -lstat > 21-13-0761_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/21-13-0761;sed -i "1,2d" 21-13-0761_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/21-13-0761;sed "s/\s\+/,/g" 21-13-0761_pre_ATROPOS_GMM_ELONGATION.txt > 21-13-0761_pre_ATROPOS_GMM_ELONGATION.csv cd $(WORKDIR)/21-13-0761;sed -i "s/^/21-13-0761_pre_ATROPOS_GMM_ELONGATION,/" 21-13-0761_pre_ATROPOS_GMM_ELONGATION.csv job_21-13-0761_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE: cd $(WORKDIR)/21-13-0761;c3d 21-13-0761_pre_ATROPOS_GMM_LABEL3_DISTANCE.nii.gz 21-13-0761_labels.nii.gz -lstat > 21-13-0761_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/21-13-0761;sed -i "1,2d" 21-13-0761_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/21-13-0761;sed "s/\s\+/,/g" 21-13-0761_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt > 21-13-0761_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv cd $(WORKDIR)/21-13-0761;sed -i "s/^/21-13-0761_pre_ATROPOS_GMM_LABEL3_DISTANCE,/" 21-13-0761_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv job_21-13-0761_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME: cd $(WORKDIR)/21-13-0761;c3d 21-13-0761_pre_ATROPOS_GMM_PHYSICAL_VOLUME.nii.gz 21-13-0761_labels.nii.gz -lstat > 21-13-0761_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/21-13-0761;sed -i "1,2d" 21-13-0761_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/21-13-0761;sed "s/\s\+/,/g" 21-13-0761_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt > 21-13-0761_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv cd $(WORKDIR)/21-13-0761;sed -i "s/^/21-13-0761_pre_ATROPOS_GMM_PHYSICAL_VOLUME,/" 21-13-0761_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv job_21-13-0761_wCSV_pre_ATROPOS_GMM_POSTERIORS1: cd $(WORKDIR)/21-13-0761;c3d 21-13-0761_pre_ATROPOS_GMM_POSTERIORS1.nii.gz 21-13-0761_labels.nii.gz -lstat > 21-13-0761_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/21-13-0761;sed -i "1,2d" 21-13-0761_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/21-13-0761;sed "s/\s\+/,/g" 21-13-0761_pre_ATROPOS_GMM_POSTERIORS1.txt > 21-13-0761_pre_ATROPOS_GMM_POSTERIORS1.csv cd $(WORKDIR)/21-13-0761;sed -i "s/^/21-13-0761_pre_ATROPOS_GMM_POSTERIORS1,/" 21-13-0761_pre_ATROPOS_GMM_POSTERIORS1.csv job_21-13-0761_wCSV_pre_ATROPOS_GMM_POSTERIORS2: cd $(WORKDIR)/21-13-0761;c3d 21-13-0761_pre_ATROPOS_GMM_POSTERIORS2.nii.gz 21-13-0761_labels.nii.gz -lstat > 21-13-0761_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/21-13-0761;sed -i "1,2d" 21-13-0761_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/21-13-0761;sed "s/\s\+/,/g" 21-13-0761_pre_ATROPOS_GMM_POSTERIORS2.txt > 21-13-0761_pre_ATROPOS_GMM_POSTERIORS2.csv cd $(WORKDIR)/21-13-0761;sed -i "s/^/21-13-0761_pre_ATROPOS_GMM_POSTERIORS2,/" 21-13-0761_pre_ATROPOS_GMM_POSTERIORS2.csv job_21-13-0761_wCSV_pre_ATROPOS_GMM_POSTERIORS3: cd $(WORKDIR)/21-13-0761;c3d 21-13-0761_pre_ATROPOS_GMM_POSTERIORS3.nii.gz 21-13-0761_labels.nii.gz -lstat > 21-13-0761_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/21-13-0761;sed -i "1,2d" 21-13-0761_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/21-13-0761;sed "s/\s\+/,/g" 21-13-0761_pre_ATROPOS_GMM_POSTERIORS3.txt > 21-13-0761_pre_ATROPOS_GMM_POSTERIORS3.csv cd $(WORKDIR)/21-13-0761;sed -i "s/^/21-13-0761_pre_ATROPOS_GMM_POSTERIORS3,/" 21-13-0761_pre_ATROPOS_GMM_POSTERIORS3.csv job_21-13-0761_wCSV_pre_ATROPOS_GMM_POSTERIORS4: cd $(WORKDIR)/21-13-0761;c3d 21-13-0761_pre_ATROPOS_GMM_POSTERIORS4.nii.gz 21-13-0761_labels.nii.gz -lstat > 21-13-0761_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/21-13-0761;sed -i "1,2d" 21-13-0761_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/21-13-0761;sed "s/\s\+/,/g" 21-13-0761_pre_ATROPOS_GMM_POSTERIORS4.txt > 21-13-0761_pre_ATROPOS_GMM_POSTERIORS4.csv cd $(WORKDIR)/21-13-0761;sed -i "s/^/21-13-0761_pre_ATROPOS_GMM_POSTERIORS4,/" 21-13-0761_pre_ATROPOS_GMM_POSTERIORS4.csv job_21-13-0761_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO: cd $(WORKDIR)/21-13-0761;c3d 21-13-0761_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.nii.gz 21-13-0761_labels.nii.gz -lstat > 21-13-0761_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/21-13-0761;sed -i "1,2d" 21-13-0761_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/21-13-0761;sed "s/\s\+/,/g" 21-13-0761_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt > 21-13-0761_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv cd $(WORKDIR)/21-13-0761;sed -i "s/^/21-13-0761_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO,/" 21-13-0761_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv job_21-13-0761_wCSV_pre_ENTROPY_RADIUS_1: cd $(WORKDIR)/21-13-0761;c3d 21-13-0761_pre_ENTROPY_RADIUS_1.nii.gz 21-13-0761_labels.nii.gz -lstat > 21-13-0761_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/21-13-0761;sed -i "1,2d" 21-13-0761_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/21-13-0761;sed "s/\s\+/,/g" 21-13-0761_pre_ENTROPY_RADIUS_1.txt > 21-13-0761_pre_ENTROPY_RADIUS_1.csv cd $(WORKDIR)/21-13-0761;sed -i "s/^/21-13-0761_pre_ENTROPY_RADIUS_1,/" 21-13-0761_pre_ENTROPY_RADIUS_1.csv job_21-13-0761_wCSV_pre_ENTROPY_RADIUS_3: cd $(WORKDIR)/21-13-0761;c3d 21-13-0761_pre_ENTROPY_RADIUS_3.nii.gz 21-13-0761_labels.nii.gz -lstat > 21-13-0761_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/21-13-0761;sed -i "1,2d" 21-13-0761_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/21-13-0761;sed "s/\s\+/,/g" 21-13-0761_pre_ENTROPY_RADIUS_3.txt > 21-13-0761_pre_ENTROPY_RADIUS_3.csv cd $(WORKDIR)/21-13-0761;sed -i "s/^/21-13-0761_pre_ENTROPY_RADIUS_3,/" 21-13-0761_pre_ENTROPY_RADIUS_3.csv job_21-13-0761_wCSV_pre_MEAN_RADIUS_1: cd $(WORKDIR)/21-13-0761;c3d 21-13-0761_pre_MEAN_RADIUS_1.nii.gz 21-13-0761_labels.nii.gz -lstat > 21-13-0761_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/21-13-0761;sed -i "1,2d" 21-13-0761_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/21-13-0761;sed "s/\s\+/,/g" 21-13-0761_pre_MEAN_RADIUS_1.txt > 21-13-0761_pre_MEAN_RADIUS_1.csv cd $(WORKDIR)/21-13-0761;sed -i "s/^/21-13-0761_pre_MEAN_RADIUS_1,/" 21-13-0761_pre_MEAN_RADIUS_1.csv job_21-13-0761_wCSV_pre_MEAN_RADIUS_3: cd $(WORKDIR)/21-13-0761;c3d 21-13-0761_pre_MEAN_RADIUS_3.nii.gz 21-13-0761_labels.nii.gz -lstat > 21-13-0761_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/21-13-0761;sed -i "1,2d" 21-13-0761_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/21-13-0761;sed "s/\s\+/,/g" 21-13-0761_pre_MEAN_RADIUS_3.txt > 21-13-0761_pre_MEAN_RADIUS_3.csv cd $(WORKDIR)/21-13-0761;sed -i "s/^/21-13-0761_pre_MEAN_RADIUS_3,/" 21-13-0761_pre_MEAN_RADIUS_3.csv job_21-13-0761_wCSV_pre_NORMALIZED: cd $(WORKDIR)/21-13-0761;c3d 21-13-0761_pre_NORMALIZED.nii.gz 21-13-0761_labels.nii.gz -lstat > 21-13-0761_pre_NORMALIZED.txt cd $(WORKDIR)/21-13-0761;sed -i "1,2d" 21-13-0761_pre_NORMALIZED.txt cd $(WORKDIR)/21-13-0761;sed "s/\s\+/,/g" 21-13-0761_pre_NORMALIZED.txt > 21-13-0761_pre_NORMALIZED.csv cd $(WORKDIR)/21-13-0761;sed -i "s/^/21-13-0761_pre_NORMALIZED,/" 21-13-0761_pre_NORMALIZED.csv job_21-13-0761_wCSV_pre_SIGMA_RADIUS_1: cd $(WORKDIR)/21-13-0761;c3d 21-13-0761_pre_SIGMA_RADIUS_1.nii.gz 21-13-0761_labels.nii.gz -lstat > 21-13-0761_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/21-13-0761;sed -i "1,2d" 21-13-0761_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/21-13-0761;sed "s/\s\+/,/g" 21-13-0761_pre_SIGMA_RADIUS_1.txt > 21-13-0761_pre_SIGMA_RADIUS_1.csv cd $(WORKDIR)/21-13-0761;sed -i "s/^/21-13-0761_pre_SIGMA_RADIUS_1,/" 21-13-0761_pre_SIGMA_RADIUS_1.csv job_21-13-0761_wCSV_pre_SIGMA_RADIUS_3: cd $(WORKDIR)/21-13-0761;c3d 21-13-0761_pre_SIGMA_RADIUS_3.nii.gz 21-13-0761_labels.nii.gz -lstat > 21-13-0761_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/21-13-0761;sed -i "1,2d" 21-13-0761_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/21-13-0761;sed "s/\s\+/,/g" 21-13-0761_pre_SIGMA_RADIUS_3.txt > 21-13-0761_pre_SIGMA_RADIUS_3.csv cd $(WORKDIR)/21-13-0761;sed -i "s/^/21-13-0761_pre_SIGMA_RADIUS_3,/" 21-13-0761_pre_SIGMA_RADIUS_3.csv job_21-13-0761_wCSV_pre_SKEWNESS_RADIUS_1: cd $(WORKDIR)/21-13-0761;c3d 21-13-0761_pre_SKEWNESS_RADIUS_1.nii.gz 21-13-0761_labels.nii.gz -lstat > 21-13-0761_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/21-13-0761;sed -i "1,2d" 21-13-0761_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/21-13-0761;sed "s/\s\+/,/g" 21-13-0761_pre_SKEWNESS_RADIUS_1.txt > 21-13-0761_pre_SKEWNESS_RADIUS_1.csv cd $(WORKDIR)/21-13-0761;sed -i "s/^/21-13-0761_pre_SKEWNESS_RADIUS_1,/" 21-13-0761_pre_SKEWNESS_RADIUS_1.csv job_21-13-0761_wCSV_pre_SKEWNESS_RADIUS_3: cd $(WORKDIR)/21-13-0761;c3d 21-13-0761_pre_SKEWNESS_RADIUS_3.nii.gz 21-13-0761_labels.nii.gz -lstat > 21-13-0761_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/21-13-0761;sed -i "1,2d" 21-13-0761_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/21-13-0761;sed "s/\s\+/,/g" 21-13-0761_pre_SKEWNESS_RADIUS_3.txt > 21-13-0761_pre_SKEWNESS_RADIUS_3.csv cd $(WORKDIR)/21-13-0761;sed -i "s/^/21-13-0761_pre_SKEWNESS_RADIUS_3,/" 21-13-0761_pre_SKEWNESS_RADIUS_3.csv job_21-13-0761_wCSV_pre__DIFFERENCE: cd $(WORKDIR)/21-13-0761;c3d 21-13-0761_pre__DIFFERENCE.nii.gz 21-13-0761_labels.nii.gz -lstat > 21-13-0761_pre__DIFFERENCE.txt cd $(WORKDIR)/21-13-0761;sed -i "1,2d" 21-13-0761_pre__DIFFERENCE.txt cd $(WORKDIR)/21-13-0761;sed "s/\s\+/,/g" 21-13-0761_pre__DIFFERENCE.txt > 21-13-0761_pre__DIFFERENCE.csv cd $(WORKDIR)/21-13-0761;sed -i "s/^/21-13-0761_pre__DIFFERENCE,/" 21-13-0761_pre__DIFFERENCE.csv job_22-13-0762_crFI: cd $(WORKDIR)/22-13-0762;c3d 22-13-0762_grey.nii.gz 22-13-0762_labels.nii.gz -copy-transform -o 22-13-0762_labels.nii.gz cd $(WORKDIR)/22-13-0762;c3d 22-13-0762_grey.nii.gz -orient RAI -o 22-13-0762_grey.nii.gz cd $(WORKDIR)/22-13-0762;c3d 22-13-0762_labels.nii.gz -orient RAI -o 22-13-0762_labels.nii.gz cd $(WORKDIR)/22-13-0762;c3d 22-13-0762_labels.nii.gz -binarize -o 22-13-0762_mask.nii.gz cd $(WORKDIR)/22-13-0762;../createFeatureImagesOvary.sh -d 3 -x 22-13-0762_mask.nii.gz -l3 -n pre -a 22-13-0762_grey.nii.gz -f 0x2 -o ./22-13-0762_ -r 1 -r 3 -s 2 -b 4 job_22-13-0762_wCSV_NORMALIZED_DISTANCE: cd $(WORKDIR)/22-13-0762;c3d 22-13-0762_NORMALIZED_DISTANCE.nii.gz 22-13-0762_labels.nii.gz -lstat > 22-13-0762_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/22-13-0762;sed -i "1,2d" 22-13-0762_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/22-13-0762;sed "s/\s\+/,/g" 22-13-0762_NORMALIZED_DISTANCE.txt > 22-13-0762_NORMALIZED_DISTANCE.csv cd $(WORKDIR)/22-13-0762;sed -i "s/^/22-13-0762_NORMALIZED_DISTANCE,/" 22-13-0762_NORMALIZED_DISTANCE.csv job_22-13-0762_wCSV_pre_ATROPOS_GMM: cd $(WORKDIR)/22-13-0762;c3d 22-13-0762_pre_ATROPOS_GMM.nii.gz 22-13-0762_labels.nii.gz -lstat > 22-13-0762_pre_ATROPOS_GMM.txt cd $(WORKDIR)/22-13-0762;sed -i "1,2d" 22-13-0762_pre_ATROPOS_GMM.txt cd $(WORKDIR)/22-13-0762;sed "s/\s\+/,/g" 22-13-0762_pre_ATROPOS_GMM.txt > 22-13-0762_pre_ATROPOS_GMM.csv cd $(WORKDIR)/22-13-0762;sed -i "s/^/22-13-0762_pre_ATROPOS_GMM,/" 22-13-0762_pre_ATROPOS_GMM.csv job_22-13-0762_wCSV_pre_ATROPOS_GMM_ECCENTRICITY: cd $(WORKDIR)/22-13-0762;c3d 22-13-0762_pre_ATROPOS_GMM_ECCENTRICITY.nii.gz 22-13-0762_labels.nii.gz -lstat > 22-13-0762_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/22-13-0762;sed -i "1,2d" 22-13-0762_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/22-13-0762;sed "s/\s\+/,/g" 22-13-0762_pre_ATROPOS_GMM_ECCENTRICITY.txt > 22-13-0762_pre_ATROPOS_GMM_ECCENTRICITY.csv cd $(WORKDIR)/22-13-0762;sed -i "s/^/22-13-0762_pre_ATROPOS_GMM_ECCENTRICITY,/" 22-13-0762_pre_ATROPOS_GMM_ECCENTRICITY.csv job_22-13-0762_wCSV_pre_ATROPOS_GMM_ELONGATION: cd $(WORKDIR)/22-13-0762;c3d 22-13-0762_pre_ATROPOS_GMM_ELONGATION.nii.gz 22-13-0762_labels.nii.gz -lstat > 22-13-0762_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/22-13-0762;sed -i "1,2d" 22-13-0762_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/22-13-0762;sed "s/\s\+/,/g" 22-13-0762_pre_ATROPOS_GMM_ELONGATION.txt > 22-13-0762_pre_ATROPOS_GMM_ELONGATION.csv cd $(WORKDIR)/22-13-0762;sed -i "s/^/22-13-0762_pre_ATROPOS_GMM_ELONGATION,/" 22-13-0762_pre_ATROPOS_GMM_ELONGATION.csv job_22-13-0762_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE: cd $(WORKDIR)/22-13-0762;c3d 22-13-0762_pre_ATROPOS_GMM_LABEL3_DISTANCE.nii.gz 22-13-0762_labels.nii.gz -lstat > 22-13-0762_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/22-13-0762;sed -i "1,2d" 22-13-0762_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/22-13-0762;sed "s/\s\+/,/g" 22-13-0762_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt > 22-13-0762_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv cd $(WORKDIR)/22-13-0762;sed -i "s/^/22-13-0762_pre_ATROPOS_GMM_LABEL3_DISTANCE,/" 22-13-0762_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv job_22-13-0762_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME: cd $(WORKDIR)/22-13-0762;c3d 22-13-0762_pre_ATROPOS_GMM_PHYSICAL_VOLUME.nii.gz 22-13-0762_labels.nii.gz -lstat > 22-13-0762_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/22-13-0762;sed -i "1,2d" 22-13-0762_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/22-13-0762;sed "s/\s\+/,/g" 22-13-0762_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt > 22-13-0762_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv cd $(WORKDIR)/22-13-0762;sed -i "s/^/22-13-0762_pre_ATROPOS_GMM_PHYSICAL_VOLUME,/" 22-13-0762_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv job_22-13-0762_wCSV_pre_ATROPOS_GMM_POSTERIORS1: cd $(WORKDIR)/22-13-0762;c3d 22-13-0762_pre_ATROPOS_GMM_POSTERIORS1.nii.gz 22-13-0762_labels.nii.gz -lstat > 22-13-0762_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/22-13-0762;sed -i "1,2d" 22-13-0762_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/22-13-0762;sed "s/\s\+/,/g" 22-13-0762_pre_ATROPOS_GMM_POSTERIORS1.txt > 22-13-0762_pre_ATROPOS_GMM_POSTERIORS1.csv cd $(WORKDIR)/22-13-0762;sed -i "s/^/22-13-0762_pre_ATROPOS_GMM_POSTERIORS1,/" 22-13-0762_pre_ATROPOS_GMM_POSTERIORS1.csv job_22-13-0762_wCSV_pre_ATROPOS_GMM_POSTERIORS2: cd $(WORKDIR)/22-13-0762;c3d 22-13-0762_pre_ATROPOS_GMM_POSTERIORS2.nii.gz 22-13-0762_labels.nii.gz -lstat > 22-13-0762_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/22-13-0762;sed -i "1,2d" 22-13-0762_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/22-13-0762;sed "s/\s\+/,/g" 22-13-0762_pre_ATROPOS_GMM_POSTERIORS2.txt > 22-13-0762_pre_ATROPOS_GMM_POSTERIORS2.csv cd $(WORKDIR)/22-13-0762;sed -i "s/^/22-13-0762_pre_ATROPOS_GMM_POSTERIORS2,/" 22-13-0762_pre_ATROPOS_GMM_POSTERIORS2.csv job_22-13-0762_wCSV_pre_ATROPOS_GMM_POSTERIORS3: cd $(WORKDIR)/22-13-0762;c3d 22-13-0762_pre_ATROPOS_GMM_POSTERIORS3.nii.gz 22-13-0762_labels.nii.gz -lstat > 22-13-0762_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/22-13-0762;sed -i "1,2d" 22-13-0762_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/22-13-0762;sed "s/\s\+/,/g" 22-13-0762_pre_ATROPOS_GMM_POSTERIORS3.txt > 22-13-0762_pre_ATROPOS_GMM_POSTERIORS3.csv cd $(WORKDIR)/22-13-0762;sed -i "s/^/22-13-0762_pre_ATROPOS_GMM_POSTERIORS3,/" 22-13-0762_pre_ATROPOS_GMM_POSTERIORS3.csv job_22-13-0762_wCSV_pre_ATROPOS_GMM_POSTERIORS4: cd $(WORKDIR)/22-13-0762;c3d 22-13-0762_pre_ATROPOS_GMM_POSTERIORS4.nii.gz 22-13-0762_labels.nii.gz -lstat > 22-13-0762_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/22-13-0762;sed -i "1,2d" 22-13-0762_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/22-13-0762;sed "s/\s\+/,/g" 22-13-0762_pre_ATROPOS_GMM_POSTERIORS4.txt > 22-13-0762_pre_ATROPOS_GMM_POSTERIORS4.csv cd $(WORKDIR)/22-13-0762;sed -i "s/^/22-13-0762_pre_ATROPOS_GMM_POSTERIORS4,/" 22-13-0762_pre_ATROPOS_GMM_POSTERIORS4.csv job_22-13-0762_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO: cd $(WORKDIR)/22-13-0762;c3d 22-13-0762_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.nii.gz 22-13-0762_labels.nii.gz -lstat > 22-13-0762_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/22-13-0762;sed -i "1,2d" 22-13-0762_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/22-13-0762;sed "s/\s\+/,/g" 22-13-0762_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt > 22-13-0762_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv cd $(WORKDIR)/22-13-0762;sed -i "s/^/22-13-0762_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO,/" 22-13-0762_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv job_22-13-0762_wCSV_pre_ENTROPY_RADIUS_1: cd $(WORKDIR)/22-13-0762;c3d 22-13-0762_pre_ENTROPY_RADIUS_1.nii.gz 22-13-0762_labels.nii.gz -lstat > 22-13-0762_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/22-13-0762;sed -i "1,2d" 22-13-0762_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/22-13-0762;sed "s/\s\+/,/g" 22-13-0762_pre_ENTROPY_RADIUS_1.txt > 22-13-0762_pre_ENTROPY_RADIUS_1.csv cd $(WORKDIR)/22-13-0762;sed -i "s/^/22-13-0762_pre_ENTROPY_RADIUS_1,/" 22-13-0762_pre_ENTROPY_RADIUS_1.csv job_22-13-0762_wCSV_pre_ENTROPY_RADIUS_3: cd $(WORKDIR)/22-13-0762;c3d 22-13-0762_pre_ENTROPY_RADIUS_3.nii.gz 22-13-0762_labels.nii.gz -lstat > 22-13-0762_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/22-13-0762;sed -i "1,2d" 22-13-0762_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/22-13-0762;sed "s/\s\+/,/g" 22-13-0762_pre_ENTROPY_RADIUS_3.txt > 22-13-0762_pre_ENTROPY_RADIUS_3.csv cd $(WORKDIR)/22-13-0762;sed -i "s/^/22-13-0762_pre_ENTROPY_RADIUS_3,/" 22-13-0762_pre_ENTROPY_RADIUS_3.csv job_22-13-0762_wCSV_pre_MEAN_RADIUS_1: cd $(WORKDIR)/22-13-0762;c3d 22-13-0762_pre_MEAN_RADIUS_1.nii.gz 22-13-0762_labels.nii.gz -lstat > 22-13-0762_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/22-13-0762;sed -i "1,2d" 22-13-0762_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/22-13-0762;sed "s/\s\+/,/g" 22-13-0762_pre_MEAN_RADIUS_1.txt > 22-13-0762_pre_MEAN_RADIUS_1.csv cd $(WORKDIR)/22-13-0762;sed -i "s/^/22-13-0762_pre_MEAN_RADIUS_1,/" 22-13-0762_pre_MEAN_RADIUS_1.csv job_22-13-0762_wCSV_pre_MEAN_RADIUS_3: cd $(WORKDIR)/22-13-0762;c3d 22-13-0762_pre_MEAN_RADIUS_3.nii.gz 22-13-0762_labels.nii.gz -lstat > 22-13-0762_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/22-13-0762;sed -i "1,2d" 22-13-0762_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/22-13-0762;sed "s/\s\+/,/g" 22-13-0762_pre_MEAN_RADIUS_3.txt > 22-13-0762_pre_MEAN_RADIUS_3.csv cd $(WORKDIR)/22-13-0762;sed -i "s/^/22-13-0762_pre_MEAN_RADIUS_3,/" 22-13-0762_pre_MEAN_RADIUS_3.csv job_22-13-0762_wCSV_pre_NORMALIZED: cd $(WORKDIR)/22-13-0762;c3d 22-13-0762_pre_NORMALIZED.nii.gz 22-13-0762_labels.nii.gz -lstat > 22-13-0762_pre_NORMALIZED.txt cd $(WORKDIR)/22-13-0762;sed -i "1,2d" 22-13-0762_pre_NORMALIZED.txt cd $(WORKDIR)/22-13-0762;sed "s/\s\+/,/g" 22-13-0762_pre_NORMALIZED.txt > 22-13-0762_pre_NORMALIZED.csv cd $(WORKDIR)/22-13-0762;sed -i "s/^/22-13-0762_pre_NORMALIZED,/" 22-13-0762_pre_NORMALIZED.csv job_22-13-0762_wCSV_pre_SIGMA_RADIUS_1: cd $(WORKDIR)/22-13-0762;c3d 22-13-0762_pre_SIGMA_RADIUS_1.nii.gz 22-13-0762_labels.nii.gz -lstat > 22-13-0762_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/22-13-0762;sed -i "1,2d" 22-13-0762_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/22-13-0762;sed "s/\s\+/,/g" 22-13-0762_pre_SIGMA_RADIUS_1.txt > 22-13-0762_pre_SIGMA_RADIUS_1.csv cd $(WORKDIR)/22-13-0762;sed -i "s/^/22-13-0762_pre_SIGMA_RADIUS_1,/" 22-13-0762_pre_SIGMA_RADIUS_1.csv job_22-13-0762_wCSV_pre_SIGMA_RADIUS_3: cd $(WORKDIR)/22-13-0762;c3d 22-13-0762_pre_SIGMA_RADIUS_3.nii.gz 22-13-0762_labels.nii.gz -lstat > 22-13-0762_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/22-13-0762;sed -i "1,2d" 22-13-0762_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/22-13-0762;sed "s/\s\+/,/g" 22-13-0762_pre_SIGMA_RADIUS_3.txt > 22-13-0762_pre_SIGMA_RADIUS_3.csv cd $(WORKDIR)/22-13-0762;sed -i "s/^/22-13-0762_pre_SIGMA_RADIUS_3,/" 22-13-0762_pre_SIGMA_RADIUS_3.csv job_22-13-0762_wCSV_pre_SKEWNESS_RADIUS_1: cd $(WORKDIR)/22-13-0762;c3d 22-13-0762_pre_SKEWNESS_RADIUS_1.nii.gz 22-13-0762_labels.nii.gz -lstat > 22-13-0762_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/22-13-0762;sed -i "1,2d" 22-13-0762_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/22-13-0762;sed "s/\s\+/,/g" 22-13-0762_pre_SKEWNESS_RADIUS_1.txt > 22-13-0762_pre_SKEWNESS_RADIUS_1.csv cd $(WORKDIR)/22-13-0762;sed -i "s/^/22-13-0762_pre_SKEWNESS_RADIUS_1,/" 22-13-0762_pre_SKEWNESS_RADIUS_1.csv job_22-13-0762_wCSV_pre_SKEWNESS_RADIUS_3: cd $(WORKDIR)/22-13-0762;c3d 22-13-0762_pre_SKEWNESS_RADIUS_3.nii.gz 22-13-0762_labels.nii.gz -lstat > 22-13-0762_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/22-13-0762;sed -i "1,2d" 22-13-0762_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/22-13-0762;sed "s/\s\+/,/g" 22-13-0762_pre_SKEWNESS_RADIUS_3.txt > 22-13-0762_pre_SKEWNESS_RADIUS_3.csv cd $(WORKDIR)/22-13-0762;sed -i "s/^/22-13-0762_pre_SKEWNESS_RADIUS_3,/" 22-13-0762_pre_SKEWNESS_RADIUS_3.csv job_22-13-0762_wCSV_pre__DIFFERENCE: cd $(WORKDIR)/22-13-0762;c3d 22-13-0762_pre__DIFFERENCE.nii.gz 22-13-0762_labels.nii.gz -lstat > 22-13-0762_pre__DIFFERENCE.txt cd $(WORKDIR)/22-13-0762;sed -i "1,2d" 22-13-0762_pre__DIFFERENCE.txt cd $(WORKDIR)/22-13-0762;sed "s/\s\+/,/g" 22-13-0762_pre__DIFFERENCE.txt > 22-13-0762_pre__DIFFERENCE.csv cd $(WORKDIR)/22-13-0762;sed -i "s/^/22-13-0762_pre__DIFFERENCE,/" 22-13-0762_pre__DIFFERENCE.csv job_23-13-0768_crFI: cd $(WORKDIR)/23-13-0768;c3d 23-13-0768_grey.nii.gz 23-13-0768_labels.nii.gz -copy-transform -o 23-13-0768_labels.nii.gz cd $(WORKDIR)/23-13-0768;c3d 23-13-0768_grey.nii.gz -orient RAI -o 23-13-0768_grey.nii.gz cd $(WORKDIR)/23-13-0768;c3d 23-13-0768_labels.nii.gz -orient RAI -o 23-13-0768_labels.nii.gz cd $(WORKDIR)/23-13-0768;c3d 23-13-0768_labels.nii.gz -binarize -o 23-13-0768_mask.nii.gz cd $(WORKDIR)/23-13-0768;../createFeatureImagesOvary.sh -d 3 -x 23-13-0768_mask.nii.gz -l3 -n pre -a 23-13-0768_grey.nii.gz -f 0x2 -o ./23-13-0768_ -r 1 -r 3 -s 2 -b 4 job_23-13-0768_wCSV_NORMALIZED_DISTANCE: cd $(WORKDIR)/23-13-0768;c3d 23-13-0768_NORMALIZED_DISTANCE.nii.gz 23-13-0768_labels.nii.gz -lstat > 23-13-0768_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/23-13-0768;sed -i "1,2d" 23-13-0768_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/23-13-0768;sed "s/\s\+/,/g" 23-13-0768_NORMALIZED_DISTANCE.txt > 23-13-0768_NORMALIZED_DISTANCE.csv cd $(WORKDIR)/23-13-0768;sed -i "s/^/23-13-0768_NORMALIZED_DISTANCE,/" 23-13-0768_NORMALIZED_DISTANCE.csv job_23-13-0768_wCSV_pre_ATROPOS_GMM: cd $(WORKDIR)/23-13-0768;c3d 23-13-0768_pre_ATROPOS_GMM.nii.gz 23-13-0768_labels.nii.gz -lstat > 23-13-0768_pre_ATROPOS_GMM.txt cd $(WORKDIR)/23-13-0768;sed -i "1,2d" 23-13-0768_pre_ATROPOS_GMM.txt cd $(WORKDIR)/23-13-0768;sed "s/\s\+/,/g" 23-13-0768_pre_ATROPOS_GMM.txt > 23-13-0768_pre_ATROPOS_GMM.csv cd $(WORKDIR)/23-13-0768;sed -i "s/^/23-13-0768_pre_ATROPOS_GMM,/" 23-13-0768_pre_ATROPOS_GMM.csv job_23-13-0768_wCSV_pre_ATROPOS_GMM_ECCENTRICITY: cd $(WORKDIR)/23-13-0768;c3d 23-13-0768_pre_ATROPOS_GMM_ECCENTRICITY.nii.gz 23-13-0768_labels.nii.gz -lstat > 23-13-0768_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/23-13-0768;sed -i "1,2d" 23-13-0768_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/23-13-0768;sed "s/\s\+/,/g" 23-13-0768_pre_ATROPOS_GMM_ECCENTRICITY.txt > 23-13-0768_pre_ATROPOS_GMM_ECCENTRICITY.csv cd $(WORKDIR)/23-13-0768;sed -i "s/^/23-13-0768_pre_ATROPOS_GMM_ECCENTRICITY,/" 23-13-0768_pre_ATROPOS_GMM_ECCENTRICITY.csv job_23-13-0768_wCSV_pre_ATROPOS_GMM_ELONGATION: cd $(WORKDIR)/23-13-0768;c3d 23-13-0768_pre_ATROPOS_GMM_ELONGATION.nii.gz 23-13-0768_labels.nii.gz -lstat > 23-13-0768_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/23-13-0768;sed -i "1,2d" 23-13-0768_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/23-13-0768;sed "s/\s\+/,/g" 23-13-0768_pre_ATROPOS_GMM_ELONGATION.txt > 23-13-0768_pre_ATROPOS_GMM_ELONGATION.csv cd $(WORKDIR)/23-13-0768;sed -i "s/^/23-13-0768_pre_ATROPOS_GMM_ELONGATION,/" 23-13-0768_pre_ATROPOS_GMM_ELONGATION.csv job_23-13-0768_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE: cd $(WORKDIR)/23-13-0768;c3d 23-13-0768_pre_ATROPOS_GMM_LABEL3_DISTANCE.nii.gz 23-13-0768_labels.nii.gz -lstat > 23-13-0768_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/23-13-0768;sed -i "1,2d" 23-13-0768_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/23-13-0768;sed "s/\s\+/,/g" 23-13-0768_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt > 23-13-0768_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv cd $(WORKDIR)/23-13-0768;sed -i "s/^/23-13-0768_pre_ATROPOS_GMM_LABEL3_DISTANCE,/" 23-13-0768_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv job_23-13-0768_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME: cd $(WORKDIR)/23-13-0768;c3d 23-13-0768_pre_ATROPOS_GMM_PHYSICAL_VOLUME.nii.gz 23-13-0768_labels.nii.gz -lstat > 23-13-0768_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/23-13-0768;sed -i "1,2d" 23-13-0768_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/23-13-0768;sed "s/\s\+/,/g" 23-13-0768_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt > 23-13-0768_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv cd $(WORKDIR)/23-13-0768;sed -i "s/^/23-13-0768_pre_ATROPOS_GMM_PHYSICAL_VOLUME,/" 23-13-0768_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv job_23-13-0768_wCSV_pre_ATROPOS_GMM_POSTERIORS1: cd $(WORKDIR)/23-13-0768;c3d 23-13-0768_pre_ATROPOS_GMM_POSTERIORS1.nii.gz 23-13-0768_labels.nii.gz -lstat > 23-13-0768_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/23-13-0768;sed -i "1,2d" 23-13-0768_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/23-13-0768;sed "s/\s\+/,/g" 23-13-0768_pre_ATROPOS_GMM_POSTERIORS1.txt > 23-13-0768_pre_ATROPOS_GMM_POSTERIORS1.csv cd $(WORKDIR)/23-13-0768;sed -i "s/^/23-13-0768_pre_ATROPOS_GMM_POSTERIORS1,/" 23-13-0768_pre_ATROPOS_GMM_POSTERIORS1.csv job_23-13-0768_wCSV_pre_ATROPOS_GMM_POSTERIORS2: cd $(WORKDIR)/23-13-0768;c3d 23-13-0768_pre_ATROPOS_GMM_POSTERIORS2.nii.gz 23-13-0768_labels.nii.gz -lstat > 23-13-0768_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/23-13-0768;sed -i "1,2d" 23-13-0768_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/23-13-0768;sed "s/\s\+/,/g" 23-13-0768_pre_ATROPOS_GMM_POSTERIORS2.txt > 23-13-0768_pre_ATROPOS_GMM_POSTERIORS2.csv cd $(WORKDIR)/23-13-0768;sed -i "s/^/23-13-0768_pre_ATROPOS_GMM_POSTERIORS2,/" 23-13-0768_pre_ATROPOS_GMM_POSTERIORS2.csv job_23-13-0768_wCSV_pre_ATROPOS_GMM_POSTERIORS3: cd $(WORKDIR)/23-13-0768;c3d 23-13-0768_pre_ATROPOS_GMM_POSTERIORS3.nii.gz 23-13-0768_labels.nii.gz -lstat > 23-13-0768_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/23-13-0768;sed -i "1,2d" 23-13-0768_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/23-13-0768;sed "s/\s\+/,/g" 23-13-0768_pre_ATROPOS_GMM_POSTERIORS3.txt > 23-13-0768_pre_ATROPOS_GMM_POSTERIORS3.csv cd $(WORKDIR)/23-13-0768;sed -i "s/^/23-13-0768_pre_ATROPOS_GMM_POSTERIORS3,/" 23-13-0768_pre_ATROPOS_GMM_POSTERIORS3.csv job_23-13-0768_wCSV_pre_ATROPOS_GMM_POSTERIORS4: cd $(WORKDIR)/23-13-0768;c3d 23-13-0768_pre_ATROPOS_GMM_POSTERIORS4.nii.gz 23-13-0768_labels.nii.gz -lstat > 23-13-0768_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/23-13-0768;sed -i "1,2d" 23-13-0768_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/23-13-0768;sed "s/\s\+/,/g" 23-13-0768_pre_ATROPOS_GMM_POSTERIORS4.txt > 23-13-0768_pre_ATROPOS_GMM_POSTERIORS4.csv cd $(WORKDIR)/23-13-0768;sed -i "s/^/23-13-0768_pre_ATROPOS_GMM_POSTERIORS4,/" 23-13-0768_pre_ATROPOS_GMM_POSTERIORS4.csv job_23-13-0768_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO: cd $(WORKDIR)/23-13-0768;c3d 23-13-0768_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.nii.gz 23-13-0768_labels.nii.gz -lstat > 23-13-0768_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/23-13-0768;sed -i "1,2d" 23-13-0768_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/23-13-0768;sed "s/\s\+/,/g" 23-13-0768_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt > 23-13-0768_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv cd $(WORKDIR)/23-13-0768;sed -i "s/^/23-13-0768_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO,/" 23-13-0768_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv job_23-13-0768_wCSV_pre_ENTROPY_RADIUS_1: cd $(WORKDIR)/23-13-0768;c3d 23-13-0768_pre_ENTROPY_RADIUS_1.nii.gz 23-13-0768_labels.nii.gz -lstat > 23-13-0768_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/23-13-0768;sed -i "1,2d" 23-13-0768_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/23-13-0768;sed "s/\s\+/,/g" 23-13-0768_pre_ENTROPY_RADIUS_1.txt > 23-13-0768_pre_ENTROPY_RADIUS_1.csv cd $(WORKDIR)/23-13-0768;sed -i "s/^/23-13-0768_pre_ENTROPY_RADIUS_1,/" 23-13-0768_pre_ENTROPY_RADIUS_1.csv job_23-13-0768_wCSV_pre_ENTROPY_RADIUS_3: cd $(WORKDIR)/23-13-0768;c3d 23-13-0768_pre_ENTROPY_RADIUS_3.nii.gz 23-13-0768_labels.nii.gz -lstat > 23-13-0768_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/23-13-0768;sed -i "1,2d" 23-13-0768_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/23-13-0768;sed "s/\s\+/,/g" 23-13-0768_pre_ENTROPY_RADIUS_3.txt > 23-13-0768_pre_ENTROPY_RADIUS_3.csv cd $(WORKDIR)/23-13-0768;sed -i "s/^/23-13-0768_pre_ENTROPY_RADIUS_3,/" 23-13-0768_pre_ENTROPY_RADIUS_3.csv job_23-13-0768_wCSV_pre_MEAN_RADIUS_1: cd $(WORKDIR)/23-13-0768;c3d 23-13-0768_pre_MEAN_RADIUS_1.nii.gz 23-13-0768_labels.nii.gz -lstat > 23-13-0768_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/23-13-0768;sed -i "1,2d" 23-13-0768_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/23-13-0768;sed "s/\s\+/,/g" 23-13-0768_pre_MEAN_RADIUS_1.txt > 23-13-0768_pre_MEAN_RADIUS_1.csv cd $(WORKDIR)/23-13-0768;sed -i "s/^/23-13-0768_pre_MEAN_RADIUS_1,/" 23-13-0768_pre_MEAN_RADIUS_1.csv job_23-13-0768_wCSV_pre_MEAN_RADIUS_3: cd $(WORKDIR)/23-13-0768;c3d 23-13-0768_pre_MEAN_RADIUS_3.nii.gz 23-13-0768_labels.nii.gz -lstat > 23-13-0768_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/23-13-0768;sed -i "1,2d" 23-13-0768_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/23-13-0768;sed "s/\s\+/,/g" 23-13-0768_pre_MEAN_RADIUS_3.txt > 23-13-0768_pre_MEAN_RADIUS_3.csv cd $(WORKDIR)/23-13-0768;sed -i "s/^/23-13-0768_pre_MEAN_RADIUS_3,/" 23-13-0768_pre_MEAN_RADIUS_3.csv job_23-13-0768_wCSV_pre_NORMALIZED: cd $(WORKDIR)/23-13-0768;c3d 23-13-0768_pre_NORMALIZED.nii.gz 23-13-0768_labels.nii.gz -lstat > 23-13-0768_pre_NORMALIZED.txt cd $(WORKDIR)/23-13-0768;sed -i "1,2d" 23-13-0768_pre_NORMALIZED.txt cd $(WORKDIR)/23-13-0768;sed "s/\s\+/,/g" 23-13-0768_pre_NORMALIZED.txt > 23-13-0768_pre_NORMALIZED.csv cd $(WORKDIR)/23-13-0768;sed -i "s/^/23-13-0768_pre_NORMALIZED,/" 23-13-0768_pre_NORMALIZED.csv job_23-13-0768_wCSV_pre_SIGMA_RADIUS_1: cd $(WORKDIR)/23-13-0768;c3d 23-13-0768_pre_SIGMA_RADIUS_1.nii.gz 23-13-0768_labels.nii.gz -lstat > 23-13-0768_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/23-13-0768;sed -i "1,2d" 23-13-0768_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/23-13-0768;sed "s/\s\+/,/g" 23-13-0768_pre_SIGMA_RADIUS_1.txt > 23-13-0768_pre_SIGMA_RADIUS_1.csv cd $(WORKDIR)/23-13-0768;sed -i "s/^/23-13-0768_pre_SIGMA_RADIUS_1,/" 23-13-0768_pre_SIGMA_RADIUS_1.csv job_23-13-0768_wCSV_pre_SIGMA_RADIUS_3: cd $(WORKDIR)/23-13-0768;c3d 23-13-0768_pre_SIGMA_RADIUS_3.nii.gz 23-13-0768_labels.nii.gz -lstat > 23-13-0768_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/23-13-0768;sed -i "1,2d" 23-13-0768_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/23-13-0768;sed "s/\s\+/,/g" 23-13-0768_pre_SIGMA_RADIUS_3.txt > 23-13-0768_pre_SIGMA_RADIUS_3.csv cd $(WORKDIR)/23-13-0768;sed -i "s/^/23-13-0768_pre_SIGMA_RADIUS_3,/" 23-13-0768_pre_SIGMA_RADIUS_3.csv job_23-13-0768_wCSV_pre_SKEWNESS_RADIUS_1: cd $(WORKDIR)/23-13-0768;c3d 23-13-0768_pre_SKEWNESS_RADIUS_1.nii.gz 23-13-0768_labels.nii.gz -lstat > 23-13-0768_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/23-13-0768;sed -i "1,2d" 23-13-0768_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/23-13-0768;sed "s/\s\+/,/g" 23-13-0768_pre_SKEWNESS_RADIUS_1.txt > 23-13-0768_pre_SKEWNESS_RADIUS_1.csv cd $(WORKDIR)/23-13-0768;sed -i "s/^/23-13-0768_pre_SKEWNESS_RADIUS_1,/" 23-13-0768_pre_SKEWNESS_RADIUS_1.csv job_23-13-0768_wCSV_pre_SKEWNESS_RADIUS_3: cd $(WORKDIR)/23-13-0768;c3d 23-13-0768_pre_SKEWNESS_RADIUS_3.nii.gz 23-13-0768_labels.nii.gz -lstat > 23-13-0768_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/23-13-0768;sed -i "1,2d" 23-13-0768_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/23-13-0768;sed "s/\s\+/,/g" 23-13-0768_pre_SKEWNESS_RADIUS_3.txt > 23-13-0768_pre_SKEWNESS_RADIUS_3.csv cd $(WORKDIR)/23-13-0768;sed -i "s/^/23-13-0768_pre_SKEWNESS_RADIUS_3,/" 23-13-0768_pre_SKEWNESS_RADIUS_3.csv job_23-13-0768_wCSV_pre__DIFFERENCE: cd $(WORKDIR)/23-13-0768;c3d 23-13-0768_pre__DIFFERENCE.nii.gz 23-13-0768_labels.nii.gz -lstat > 23-13-0768_pre__DIFFERENCE.txt cd $(WORKDIR)/23-13-0768;sed -i "1,2d" 23-13-0768_pre__DIFFERENCE.txt cd $(WORKDIR)/23-13-0768;sed "s/\s\+/,/g" 23-13-0768_pre__DIFFERENCE.txt > 23-13-0768_pre__DIFFERENCE.csv cd $(WORKDIR)/23-13-0768;sed -i "s/^/23-13-0768_pre__DIFFERENCE,/" 23-13-0768_pre__DIFFERENCE.csv job_24-13-0793_crFI: cd $(WORKDIR)/24-13-0793;c3d 24-13-0793_grey.nii.gz 24-13-0793_labels.nii.gz -copy-transform -o 24-13-0793_labels.nii.gz cd $(WORKDIR)/24-13-0793;c3d 24-13-0793_grey.nii.gz -orient RAI -o 24-13-0793_grey.nii.gz cd $(WORKDIR)/24-13-0793;c3d 24-13-0793_labels.nii.gz -orient RAI -o 24-13-0793_labels.nii.gz cd $(WORKDIR)/24-13-0793;c3d 24-13-0793_labels.nii.gz -binarize -o 24-13-0793_mask.nii.gz cd $(WORKDIR)/24-13-0793;../createFeatureImagesOvary.sh -d 3 -x 24-13-0793_mask.nii.gz -l3 -n pre -a 24-13-0793_grey.nii.gz -f 0x2 -o ./24-13-0793_ -r 1 -r 3 -s 2 -b 4 job_24-13-0793_wCSV_NORMALIZED_DISTANCE: cd $(WORKDIR)/24-13-0793;c3d 24-13-0793_NORMALIZED_DISTANCE.nii.gz 24-13-0793_labels.nii.gz -lstat > 24-13-0793_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/24-13-0793;sed -i "1,2d" 24-13-0793_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/24-13-0793;sed "s/\s\+/,/g" 24-13-0793_NORMALIZED_DISTANCE.txt > 24-13-0793_NORMALIZED_DISTANCE.csv cd $(WORKDIR)/24-13-0793;sed -i "s/^/24-13-0793_NORMALIZED_DISTANCE,/" 24-13-0793_NORMALIZED_DISTANCE.csv job_24-13-0793_wCSV_pre_ATROPOS_GMM: cd $(WORKDIR)/24-13-0793;c3d 24-13-0793_pre_ATROPOS_GMM.nii.gz 24-13-0793_labels.nii.gz -lstat > 24-13-0793_pre_ATROPOS_GMM.txt cd $(WORKDIR)/24-13-0793;sed -i "1,2d" 24-13-0793_pre_ATROPOS_GMM.txt cd $(WORKDIR)/24-13-0793;sed "s/\s\+/,/g" 24-13-0793_pre_ATROPOS_GMM.txt > 24-13-0793_pre_ATROPOS_GMM.csv cd $(WORKDIR)/24-13-0793;sed -i "s/^/24-13-0793_pre_ATROPOS_GMM,/" 24-13-0793_pre_ATROPOS_GMM.csv job_24-13-0793_wCSV_pre_ATROPOS_GMM_ECCENTRICITY: cd $(WORKDIR)/24-13-0793;c3d 24-13-0793_pre_ATROPOS_GMM_ECCENTRICITY.nii.gz 24-13-0793_labels.nii.gz -lstat > 24-13-0793_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/24-13-0793;sed -i "1,2d" 24-13-0793_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/24-13-0793;sed "s/\s\+/,/g" 24-13-0793_pre_ATROPOS_GMM_ECCENTRICITY.txt > 24-13-0793_pre_ATROPOS_GMM_ECCENTRICITY.csv cd $(WORKDIR)/24-13-0793;sed -i "s/^/24-13-0793_pre_ATROPOS_GMM_ECCENTRICITY,/" 24-13-0793_pre_ATROPOS_GMM_ECCENTRICITY.csv job_24-13-0793_wCSV_pre_ATROPOS_GMM_ELONGATION: cd $(WORKDIR)/24-13-0793;c3d 24-13-0793_pre_ATROPOS_GMM_ELONGATION.nii.gz 24-13-0793_labels.nii.gz -lstat > 24-13-0793_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/24-13-0793;sed -i "1,2d" 24-13-0793_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/24-13-0793;sed "s/\s\+/,/g" 24-13-0793_pre_ATROPOS_GMM_ELONGATION.txt > 24-13-0793_pre_ATROPOS_GMM_ELONGATION.csv cd $(WORKDIR)/24-13-0793;sed -i "s/^/24-13-0793_pre_ATROPOS_GMM_ELONGATION,/" 24-13-0793_pre_ATROPOS_GMM_ELONGATION.csv job_24-13-0793_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE: cd $(WORKDIR)/24-13-0793;c3d 24-13-0793_pre_ATROPOS_GMM_LABEL3_DISTANCE.nii.gz 24-13-0793_labels.nii.gz -lstat > 24-13-0793_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/24-13-0793;sed -i "1,2d" 24-13-0793_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/24-13-0793;sed "s/\s\+/,/g" 24-13-0793_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt > 24-13-0793_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv cd $(WORKDIR)/24-13-0793;sed -i "s/^/24-13-0793_pre_ATROPOS_GMM_LABEL3_DISTANCE,/" 24-13-0793_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv job_24-13-0793_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME: cd $(WORKDIR)/24-13-0793;c3d 24-13-0793_pre_ATROPOS_GMM_PHYSICAL_VOLUME.nii.gz 24-13-0793_labels.nii.gz -lstat > 24-13-0793_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/24-13-0793;sed -i "1,2d" 24-13-0793_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/24-13-0793;sed "s/\s\+/,/g" 24-13-0793_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt > 24-13-0793_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv cd $(WORKDIR)/24-13-0793;sed -i "s/^/24-13-0793_pre_ATROPOS_GMM_PHYSICAL_VOLUME,/" 24-13-0793_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv job_24-13-0793_wCSV_pre_ATROPOS_GMM_POSTERIORS1: cd $(WORKDIR)/24-13-0793;c3d 24-13-0793_pre_ATROPOS_GMM_POSTERIORS1.nii.gz 24-13-0793_labels.nii.gz -lstat > 24-13-0793_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/24-13-0793;sed -i "1,2d" 24-13-0793_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/24-13-0793;sed "s/\s\+/,/g" 24-13-0793_pre_ATROPOS_GMM_POSTERIORS1.txt > 24-13-0793_pre_ATROPOS_GMM_POSTERIORS1.csv cd $(WORKDIR)/24-13-0793;sed -i "s/^/24-13-0793_pre_ATROPOS_GMM_POSTERIORS1,/" 24-13-0793_pre_ATROPOS_GMM_POSTERIORS1.csv job_24-13-0793_wCSV_pre_ATROPOS_GMM_POSTERIORS2: cd $(WORKDIR)/24-13-0793;c3d 24-13-0793_pre_ATROPOS_GMM_POSTERIORS2.nii.gz 24-13-0793_labels.nii.gz -lstat > 24-13-0793_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/24-13-0793;sed -i "1,2d" 24-13-0793_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/24-13-0793;sed "s/\s\+/,/g" 24-13-0793_pre_ATROPOS_GMM_POSTERIORS2.txt > 24-13-0793_pre_ATROPOS_GMM_POSTERIORS2.csv cd $(WORKDIR)/24-13-0793;sed -i "s/^/24-13-0793_pre_ATROPOS_GMM_POSTERIORS2,/" 24-13-0793_pre_ATROPOS_GMM_POSTERIORS2.csv job_24-13-0793_wCSV_pre_ATROPOS_GMM_POSTERIORS3: cd $(WORKDIR)/24-13-0793;c3d 24-13-0793_pre_ATROPOS_GMM_POSTERIORS3.nii.gz 24-13-0793_labels.nii.gz -lstat > 24-13-0793_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/24-13-0793;sed -i "1,2d" 24-13-0793_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/24-13-0793;sed "s/\s\+/,/g" 24-13-0793_pre_ATROPOS_GMM_POSTERIORS3.txt > 24-13-0793_pre_ATROPOS_GMM_POSTERIORS3.csv cd $(WORKDIR)/24-13-0793;sed -i "s/^/24-13-0793_pre_ATROPOS_GMM_POSTERIORS3,/" 24-13-0793_pre_ATROPOS_GMM_POSTERIORS3.csv job_24-13-0793_wCSV_pre_ATROPOS_GMM_POSTERIORS4: cd $(WORKDIR)/24-13-0793;c3d 24-13-0793_pre_ATROPOS_GMM_POSTERIORS4.nii.gz 24-13-0793_labels.nii.gz -lstat > 24-13-0793_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/24-13-0793;sed -i "1,2d" 24-13-0793_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/24-13-0793;sed "s/\s\+/,/g" 24-13-0793_pre_ATROPOS_GMM_POSTERIORS4.txt > 24-13-0793_pre_ATROPOS_GMM_POSTERIORS4.csv cd $(WORKDIR)/24-13-0793;sed -i "s/^/24-13-0793_pre_ATROPOS_GMM_POSTERIORS4,/" 24-13-0793_pre_ATROPOS_GMM_POSTERIORS4.csv job_24-13-0793_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO: cd $(WORKDIR)/24-13-0793;c3d 24-13-0793_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.nii.gz 24-13-0793_labels.nii.gz -lstat > 24-13-0793_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/24-13-0793;sed -i "1,2d" 24-13-0793_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/24-13-0793;sed "s/\s\+/,/g" 24-13-0793_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt > 24-13-0793_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv cd $(WORKDIR)/24-13-0793;sed -i "s/^/24-13-0793_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO,/" 24-13-0793_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv job_24-13-0793_wCSV_pre_ENTROPY_RADIUS_1: cd $(WORKDIR)/24-13-0793;c3d 24-13-0793_pre_ENTROPY_RADIUS_1.nii.gz 24-13-0793_labels.nii.gz -lstat > 24-13-0793_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/24-13-0793;sed -i "1,2d" 24-13-0793_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/24-13-0793;sed "s/\s\+/,/g" 24-13-0793_pre_ENTROPY_RADIUS_1.txt > 24-13-0793_pre_ENTROPY_RADIUS_1.csv cd $(WORKDIR)/24-13-0793;sed -i "s/^/24-13-0793_pre_ENTROPY_RADIUS_1,/" 24-13-0793_pre_ENTROPY_RADIUS_1.csv job_24-13-0793_wCSV_pre_ENTROPY_RADIUS_3: cd $(WORKDIR)/24-13-0793;c3d 24-13-0793_pre_ENTROPY_RADIUS_3.nii.gz 24-13-0793_labels.nii.gz -lstat > 24-13-0793_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/24-13-0793;sed -i "1,2d" 24-13-0793_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/24-13-0793;sed "s/\s\+/,/g" 24-13-0793_pre_ENTROPY_RADIUS_3.txt > 24-13-0793_pre_ENTROPY_RADIUS_3.csv cd $(WORKDIR)/24-13-0793;sed -i "s/^/24-13-0793_pre_ENTROPY_RADIUS_3,/" 24-13-0793_pre_ENTROPY_RADIUS_3.csv job_24-13-0793_wCSV_pre_MEAN_RADIUS_1: cd $(WORKDIR)/24-13-0793;c3d 24-13-0793_pre_MEAN_RADIUS_1.nii.gz 24-13-0793_labels.nii.gz -lstat > 24-13-0793_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/24-13-0793;sed -i "1,2d" 24-13-0793_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/24-13-0793;sed "s/\s\+/,/g" 24-13-0793_pre_MEAN_RADIUS_1.txt > 24-13-0793_pre_MEAN_RADIUS_1.csv cd $(WORKDIR)/24-13-0793;sed -i "s/^/24-13-0793_pre_MEAN_RADIUS_1,/" 24-13-0793_pre_MEAN_RADIUS_1.csv job_24-13-0793_wCSV_pre_MEAN_RADIUS_3: cd $(WORKDIR)/24-13-0793;c3d 24-13-0793_pre_MEAN_RADIUS_3.nii.gz 24-13-0793_labels.nii.gz -lstat > 24-13-0793_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/24-13-0793;sed -i "1,2d" 24-13-0793_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/24-13-0793;sed "s/\s\+/,/g" 24-13-0793_pre_MEAN_RADIUS_3.txt > 24-13-0793_pre_MEAN_RADIUS_3.csv cd $(WORKDIR)/24-13-0793;sed -i "s/^/24-13-0793_pre_MEAN_RADIUS_3,/" 24-13-0793_pre_MEAN_RADIUS_3.csv job_24-13-0793_wCSV_pre_NORMALIZED: cd $(WORKDIR)/24-13-0793;c3d 24-13-0793_pre_NORMALIZED.nii.gz 24-13-0793_labels.nii.gz -lstat > 24-13-0793_pre_NORMALIZED.txt cd $(WORKDIR)/24-13-0793;sed -i "1,2d" 24-13-0793_pre_NORMALIZED.txt cd $(WORKDIR)/24-13-0793;sed "s/\s\+/,/g" 24-13-0793_pre_NORMALIZED.txt > 24-13-0793_pre_NORMALIZED.csv cd $(WORKDIR)/24-13-0793;sed -i "s/^/24-13-0793_pre_NORMALIZED,/" 24-13-0793_pre_NORMALIZED.csv job_24-13-0793_wCSV_pre_SIGMA_RADIUS_1: cd $(WORKDIR)/24-13-0793;c3d 24-13-0793_pre_SIGMA_RADIUS_1.nii.gz 24-13-0793_labels.nii.gz -lstat > 24-13-0793_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/24-13-0793;sed -i "1,2d" 24-13-0793_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/24-13-0793;sed "s/\s\+/,/g" 24-13-0793_pre_SIGMA_RADIUS_1.txt > 24-13-0793_pre_SIGMA_RADIUS_1.csv cd $(WORKDIR)/24-13-0793;sed -i "s/^/24-13-0793_pre_SIGMA_RADIUS_1,/" 24-13-0793_pre_SIGMA_RADIUS_1.csv job_24-13-0793_wCSV_pre_SIGMA_RADIUS_3: cd $(WORKDIR)/24-13-0793;c3d 24-13-0793_pre_SIGMA_RADIUS_3.nii.gz 24-13-0793_labels.nii.gz -lstat > 24-13-0793_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/24-13-0793;sed -i "1,2d" 24-13-0793_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/24-13-0793;sed "s/\s\+/,/g" 24-13-0793_pre_SIGMA_RADIUS_3.txt > 24-13-0793_pre_SIGMA_RADIUS_3.csv cd $(WORKDIR)/24-13-0793;sed -i "s/^/24-13-0793_pre_SIGMA_RADIUS_3,/" 24-13-0793_pre_SIGMA_RADIUS_3.csv job_24-13-0793_wCSV_pre_SKEWNESS_RADIUS_1: cd $(WORKDIR)/24-13-0793;c3d 24-13-0793_pre_SKEWNESS_RADIUS_1.nii.gz 24-13-0793_labels.nii.gz -lstat > 24-13-0793_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/24-13-0793;sed -i "1,2d" 24-13-0793_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/24-13-0793;sed "s/\s\+/,/g" 24-13-0793_pre_SKEWNESS_RADIUS_1.txt > 24-13-0793_pre_SKEWNESS_RADIUS_1.csv cd $(WORKDIR)/24-13-0793;sed -i "s/^/24-13-0793_pre_SKEWNESS_RADIUS_1,/" 24-13-0793_pre_SKEWNESS_RADIUS_1.csv job_24-13-0793_wCSV_pre_SKEWNESS_RADIUS_3: cd $(WORKDIR)/24-13-0793;c3d 24-13-0793_pre_SKEWNESS_RADIUS_3.nii.gz 24-13-0793_labels.nii.gz -lstat > 24-13-0793_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/24-13-0793;sed -i "1,2d" 24-13-0793_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/24-13-0793;sed "s/\s\+/,/g" 24-13-0793_pre_SKEWNESS_RADIUS_3.txt > 24-13-0793_pre_SKEWNESS_RADIUS_3.csv cd $(WORKDIR)/24-13-0793;sed -i "s/^/24-13-0793_pre_SKEWNESS_RADIUS_3,/" 24-13-0793_pre_SKEWNESS_RADIUS_3.csv job_24-13-0793_wCSV_pre__DIFFERENCE: cd $(WORKDIR)/24-13-0793;c3d 24-13-0793_pre__DIFFERENCE.nii.gz 24-13-0793_labels.nii.gz -lstat > 24-13-0793_pre__DIFFERENCE.txt cd $(WORKDIR)/24-13-0793;sed -i "1,2d" 24-13-0793_pre__DIFFERENCE.txt cd $(WORKDIR)/24-13-0793;sed "s/\s\+/,/g" 24-13-0793_pre__DIFFERENCE.txt > 24-13-0793_pre__DIFFERENCE.csv cd $(WORKDIR)/24-13-0793;sed -i "s/^/24-13-0793_pre__DIFFERENCE,/" 24-13-0793_pre__DIFFERENCE.csv job_25-13-0794_crFI: cd $(WORKDIR)/25-13-0794;c3d 25-13-0794_grey.nii.gz 25-13-0794_labels.nii.gz -copy-transform -o 25-13-0794_labels.nii.gz cd $(WORKDIR)/25-13-0794;c3d 25-13-0794_grey.nii.gz -orient RAI -o 25-13-0794_grey.nii.gz cd $(WORKDIR)/25-13-0794;c3d 25-13-0794_labels.nii.gz -orient RAI -o 25-13-0794_labels.nii.gz cd $(WORKDIR)/25-13-0794;c3d 25-13-0794_labels.nii.gz -binarize -o 25-13-0794_mask.nii.gz cd $(WORKDIR)/25-13-0794;../createFeatureImagesOvary.sh -d 3 -x 25-13-0794_mask.nii.gz -l3 -n pre -a 25-13-0794_grey.nii.gz -f 0x2 -o ./25-13-0794_ -r 1 -r 3 -s 2 -b 4 job_25-13-0794_wCSV_NORMALIZED_DISTANCE: cd $(WORKDIR)/25-13-0794;c3d 25-13-0794_NORMALIZED_DISTANCE.nii.gz 25-13-0794_labels.nii.gz -lstat > 25-13-0794_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/25-13-0794;sed -i "1,2d" 25-13-0794_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/25-13-0794;sed "s/\s\+/,/g" 25-13-0794_NORMALIZED_DISTANCE.txt > 25-13-0794_NORMALIZED_DISTANCE.csv cd $(WORKDIR)/25-13-0794;sed -i "s/^/25-13-0794_NORMALIZED_DISTANCE,/" 25-13-0794_NORMALIZED_DISTANCE.csv job_25-13-0794_wCSV_pre_ATROPOS_GMM: cd $(WORKDIR)/25-13-0794;c3d 25-13-0794_pre_ATROPOS_GMM.nii.gz 25-13-0794_labels.nii.gz -lstat > 25-13-0794_pre_ATROPOS_GMM.txt cd $(WORKDIR)/25-13-0794;sed -i "1,2d" 25-13-0794_pre_ATROPOS_GMM.txt cd $(WORKDIR)/25-13-0794;sed "s/\s\+/,/g" 25-13-0794_pre_ATROPOS_GMM.txt > 25-13-0794_pre_ATROPOS_GMM.csv cd $(WORKDIR)/25-13-0794;sed -i "s/^/25-13-0794_pre_ATROPOS_GMM,/" 25-13-0794_pre_ATROPOS_GMM.csv job_25-13-0794_wCSV_pre_ATROPOS_GMM_ECCENTRICITY: cd $(WORKDIR)/25-13-0794;c3d 25-13-0794_pre_ATROPOS_GMM_ECCENTRICITY.nii.gz 25-13-0794_labels.nii.gz -lstat > 25-13-0794_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/25-13-0794;sed -i "1,2d" 25-13-0794_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/25-13-0794;sed "s/\s\+/,/g" 25-13-0794_pre_ATROPOS_GMM_ECCENTRICITY.txt > 25-13-0794_pre_ATROPOS_GMM_ECCENTRICITY.csv cd $(WORKDIR)/25-13-0794;sed -i "s/^/25-13-0794_pre_ATROPOS_GMM_ECCENTRICITY,/" 25-13-0794_pre_ATROPOS_GMM_ECCENTRICITY.csv job_25-13-0794_wCSV_pre_ATROPOS_GMM_ELONGATION: cd $(WORKDIR)/25-13-0794;c3d 25-13-0794_pre_ATROPOS_GMM_ELONGATION.nii.gz 25-13-0794_labels.nii.gz -lstat > 25-13-0794_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/25-13-0794;sed -i "1,2d" 25-13-0794_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/25-13-0794;sed "s/\s\+/,/g" 25-13-0794_pre_ATROPOS_GMM_ELONGATION.txt > 25-13-0794_pre_ATROPOS_GMM_ELONGATION.csv cd $(WORKDIR)/25-13-0794;sed -i "s/^/25-13-0794_pre_ATROPOS_GMM_ELONGATION,/" 25-13-0794_pre_ATROPOS_GMM_ELONGATION.csv job_25-13-0794_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE: cd $(WORKDIR)/25-13-0794;c3d 25-13-0794_pre_ATROPOS_GMM_LABEL3_DISTANCE.nii.gz 25-13-0794_labels.nii.gz -lstat > 25-13-0794_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/25-13-0794;sed -i "1,2d" 25-13-0794_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/25-13-0794;sed "s/\s\+/,/g" 25-13-0794_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt > 25-13-0794_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv cd $(WORKDIR)/25-13-0794;sed -i "s/^/25-13-0794_pre_ATROPOS_GMM_LABEL3_DISTANCE,/" 25-13-0794_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv job_25-13-0794_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME: cd $(WORKDIR)/25-13-0794;c3d 25-13-0794_pre_ATROPOS_GMM_PHYSICAL_VOLUME.nii.gz 25-13-0794_labels.nii.gz -lstat > 25-13-0794_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/25-13-0794;sed -i "1,2d" 25-13-0794_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/25-13-0794;sed "s/\s\+/,/g" 25-13-0794_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt > 25-13-0794_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv cd $(WORKDIR)/25-13-0794;sed -i "s/^/25-13-0794_pre_ATROPOS_GMM_PHYSICAL_VOLUME,/" 25-13-0794_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv job_25-13-0794_wCSV_pre_ATROPOS_GMM_POSTERIORS1: cd $(WORKDIR)/25-13-0794;c3d 25-13-0794_pre_ATROPOS_GMM_POSTERIORS1.nii.gz 25-13-0794_labels.nii.gz -lstat > 25-13-0794_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/25-13-0794;sed -i "1,2d" 25-13-0794_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/25-13-0794;sed "s/\s\+/,/g" 25-13-0794_pre_ATROPOS_GMM_POSTERIORS1.txt > 25-13-0794_pre_ATROPOS_GMM_POSTERIORS1.csv cd $(WORKDIR)/25-13-0794;sed -i "s/^/25-13-0794_pre_ATROPOS_GMM_POSTERIORS1,/" 25-13-0794_pre_ATROPOS_GMM_POSTERIORS1.csv job_25-13-0794_wCSV_pre_ATROPOS_GMM_POSTERIORS2: cd $(WORKDIR)/25-13-0794;c3d 25-13-0794_pre_ATROPOS_GMM_POSTERIORS2.nii.gz 25-13-0794_labels.nii.gz -lstat > 25-13-0794_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/25-13-0794;sed -i "1,2d" 25-13-0794_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/25-13-0794;sed "s/\s\+/,/g" 25-13-0794_pre_ATROPOS_GMM_POSTERIORS2.txt > 25-13-0794_pre_ATROPOS_GMM_POSTERIORS2.csv cd $(WORKDIR)/25-13-0794;sed -i "s/^/25-13-0794_pre_ATROPOS_GMM_POSTERIORS2,/" 25-13-0794_pre_ATROPOS_GMM_POSTERIORS2.csv job_25-13-0794_wCSV_pre_ATROPOS_GMM_POSTERIORS3: cd $(WORKDIR)/25-13-0794;c3d 25-13-0794_pre_ATROPOS_GMM_POSTERIORS3.nii.gz 25-13-0794_labels.nii.gz -lstat > 25-13-0794_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/25-13-0794;sed -i "1,2d" 25-13-0794_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/25-13-0794;sed "s/\s\+/,/g" 25-13-0794_pre_ATROPOS_GMM_POSTERIORS3.txt > 25-13-0794_pre_ATROPOS_GMM_POSTERIORS3.csv cd $(WORKDIR)/25-13-0794;sed -i "s/^/25-13-0794_pre_ATROPOS_GMM_POSTERIORS3,/" 25-13-0794_pre_ATROPOS_GMM_POSTERIORS3.csv job_25-13-0794_wCSV_pre_ATROPOS_GMM_POSTERIORS4: cd $(WORKDIR)/25-13-0794;c3d 25-13-0794_pre_ATROPOS_GMM_POSTERIORS4.nii.gz 25-13-0794_labels.nii.gz -lstat > 25-13-0794_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/25-13-0794;sed -i "1,2d" 25-13-0794_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/25-13-0794;sed "s/\s\+/,/g" 25-13-0794_pre_ATROPOS_GMM_POSTERIORS4.txt > 25-13-0794_pre_ATROPOS_GMM_POSTERIORS4.csv cd $(WORKDIR)/25-13-0794;sed -i "s/^/25-13-0794_pre_ATROPOS_GMM_POSTERIORS4,/" 25-13-0794_pre_ATROPOS_GMM_POSTERIORS4.csv job_25-13-0794_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO: cd $(WORKDIR)/25-13-0794;c3d 25-13-0794_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.nii.gz 25-13-0794_labels.nii.gz -lstat > 25-13-0794_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/25-13-0794;sed -i "1,2d" 25-13-0794_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/25-13-0794;sed "s/\s\+/,/g" 25-13-0794_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt > 25-13-0794_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv cd $(WORKDIR)/25-13-0794;sed -i "s/^/25-13-0794_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO,/" 25-13-0794_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv job_25-13-0794_wCSV_pre_ENTROPY_RADIUS_1: cd $(WORKDIR)/25-13-0794;c3d 25-13-0794_pre_ENTROPY_RADIUS_1.nii.gz 25-13-0794_labels.nii.gz -lstat > 25-13-0794_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/25-13-0794;sed -i "1,2d" 25-13-0794_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/25-13-0794;sed "s/\s\+/,/g" 25-13-0794_pre_ENTROPY_RADIUS_1.txt > 25-13-0794_pre_ENTROPY_RADIUS_1.csv cd $(WORKDIR)/25-13-0794;sed -i "s/^/25-13-0794_pre_ENTROPY_RADIUS_1,/" 25-13-0794_pre_ENTROPY_RADIUS_1.csv job_25-13-0794_wCSV_pre_ENTROPY_RADIUS_3: cd $(WORKDIR)/25-13-0794;c3d 25-13-0794_pre_ENTROPY_RADIUS_3.nii.gz 25-13-0794_labels.nii.gz -lstat > 25-13-0794_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/25-13-0794;sed -i "1,2d" 25-13-0794_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/25-13-0794;sed "s/\s\+/,/g" 25-13-0794_pre_ENTROPY_RADIUS_3.txt > 25-13-0794_pre_ENTROPY_RADIUS_3.csv cd $(WORKDIR)/25-13-0794;sed -i "s/^/25-13-0794_pre_ENTROPY_RADIUS_3,/" 25-13-0794_pre_ENTROPY_RADIUS_3.csv job_25-13-0794_wCSV_pre_MEAN_RADIUS_1: cd $(WORKDIR)/25-13-0794;c3d 25-13-0794_pre_MEAN_RADIUS_1.nii.gz 25-13-0794_labels.nii.gz -lstat > 25-13-0794_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/25-13-0794;sed -i "1,2d" 25-13-0794_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/25-13-0794;sed "s/\s\+/,/g" 25-13-0794_pre_MEAN_RADIUS_1.txt > 25-13-0794_pre_MEAN_RADIUS_1.csv cd $(WORKDIR)/25-13-0794;sed -i "s/^/25-13-0794_pre_MEAN_RADIUS_1,/" 25-13-0794_pre_MEAN_RADIUS_1.csv job_25-13-0794_wCSV_pre_MEAN_RADIUS_3: cd $(WORKDIR)/25-13-0794;c3d 25-13-0794_pre_MEAN_RADIUS_3.nii.gz 25-13-0794_labels.nii.gz -lstat > 25-13-0794_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/25-13-0794;sed -i "1,2d" 25-13-0794_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/25-13-0794;sed "s/\s\+/,/g" 25-13-0794_pre_MEAN_RADIUS_3.txt > 25-13-0794_pre_MEAN_RADIUS_3.csv cd $(WORKDIR)/25-13-0794;sed -i "s/^/25-13-0794_pre_MEAN_RADIUS_3,/" 25-13-0794_pre_MEAN_RADIUS_3.csv job_25-13-0794_wCSV_pre_NORMALIZED: cd $(WORKDIR)/25-13-0794;c3d 25-13-0794_pre_NORMALIZED.nii.gz 25-13-0794_labels.nii.gz -lstat > 25-13-0794_pre_NORMALIZED.txt cd $(WORKDIR)/25-13-0794;sed -i "1,2d" 25-13-0794_pre_NORMALIZED.txt cd $(WORKDIR)/25-13-0794;sed "s/\s\+/,/g" 25-13-0794_pre_NORMALIZED.txt > 25-13-0794_pre_NORMALIZED.csv cd $(WORKDIR)/25-13-0794;sed -i "s/^/25-13-0794_pre_NORMALIZED,/" 25-13-0794_pre_NORMALIZED.csv job_25-13-0794_wCSV_pre_SIGMA_RADIUS_1: cd $(WORKDIR)/25-13-0794;c3d 25-13-0794_pre_SIGMA_RADIUS_1.nii.gz 25-13-0794_labels.nii.gz -lstat > 25-13-0794_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/25-13-0794;sed -i "1,2d" 25-13-0794_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/25-13-0794;sed "s/\s\+/,/g" 25-13-0794_pre_SIGMA_RADIUS_1.txt > 25-13-0794_pre_SIGMA_RADIUS_1.csv cd $(WORKDIR)/25-13-0794;sed -i "s/^/25-13-0794_pre_SIGMA_RADIUS_1,/" 25-13-0794_pre_SIGMA_RADIUS_1.csv job_25-13-0794_wCSV_pre_SIGMA_RADIUS_3: cd $(WORKDIR)/25-13-0794;c3d 25-13-0794_pre_SIGMA_RADIUS_3.nii.gz 25-13-0794_labels.nii.gz -lstat > 25-13-0794_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/25-13-0794;sed -i "1,2d" 25-13-0794_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/25-13-0794;sed "s/\s\+/,/g" 25-13-0794_pre_SIGMA_RADIUS_3.txt > 25-13-0794_pre_SIGMA_RADIUS_3.csv cd $(WORKDIR)/25-13-0794;sed -i "s/^/25-13-0794_pre_SIGMA_RADIUS_3,/" 25-13-0794_pre_SIGMA_RADIUS_3.csv job_25-13-0794_wCSV_pre_SKEWNESS_RADIUS_1: cd $(WORKDIR)/25-13-0794;c3d 25-13-0794_pre_SKEWNESS_RADIUS_1.nii.gz 25-13-0794_labels.nii.gz -lstat > 25-13-0794_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/25-13-0794;sed -i "1,2d" 25-13-0794_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/25-13-0794;sed "s/\s\+/,/g" 25-13-0794_pre_SKEWNESS_RADIUS_1.txt > 25-13-0794_pre_SKEWNESS_RADIUS_1.csv cd $(WORKDIR)/25-13-0794;sed -i "s/^/25-13-0794_pre_SKEWNESS_RADIUS_1,/" 25-13-0794_pre_SKEWNESS_RADIUS_1.csv job_25-13-0794_wCSV_pre_SKEWNESS_RADIUS_3: cd $(WORKDIR)/25-13-0794;c3d 25-13-0794_pre_SKEWNESS_RADIUS_3.nii.gz 25-13-0794_labels.nii.gz -lstat > 25-13-0794_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/25-13-0794;sed -i "1,2d" 25-13-0794_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/25-13-0794;sed "s/\s\+/,/g" 25-13-0794_pre_SKEWNESS_RADIUS_3.txt > 25-13-0794_pre_SKEWNESS_RADIUS_3.csv cd $(WORKDIR)/25-13-0794;sed -i "s/^/25-13-0794_pre_SKEWNESS_RADIUS_3,/" 25-13-0794_pre_SKEWNESS_RADIUS_3.csv job_25-13-0794_wCSV_pre__DIFFERENCE: cd $(WORKDIR)/25-13-0794;c3d 25-13-0794_pre__DIFFERENCE.nii.gz 25-13-0794_labels.nii.gz -lstat > 25-13-0794_pre__DIFFERENCE.txt cd $(WORKDIR)/25-13-0794;sed -i "1,2d" 25-13-0794_pre__DIFFERENCE.txt cd $(WORKDIR)/25-13-0794;sed "s/\s\+/,/g" 25-13-0794_pre__DIFFERENCE.txt > 25-13-0794_pre__DIFFERENCE.csv cd $(WORKDIR)/25-13-0794;sed -i "s/^/25-13-0794_pre__DIFFERENCE,/" 25-13-0794_pre__DIFFERENCE.csv job_26-13-0795_crFI: cd $(WORKDIR)/26-13-0795;c3d 26-13-0795_grey.nii.gz 26-13-0795_labels.nii.gz -copy-transform -o 26-13-0795_labels.nii.gz cd $(WORKDIR)/26-13-0795;c3d 26-13-0795_grey.nii.gz -orient RAI -o 26-13-0795_grey.nii.gz cd $(WORKDIR)/26-13-0795;c3d 26-13-0795_labels.nii.gz -orient RAI -o 26-13-0795_labels.nii.gz cd $(WORKDIR)/26-13-0795;c3d 26-13-0795_labels.nii.gz -binarize -o 26-13-0795_mask.nii.gz cd $(WORKDIR)/26-13-0795;../createFeatureImagesOvary.sh -d 3 -x 26-13-0795_mask.nii.gz -l3 -n pre -a 26-13-0795_grey.nii.gz -f 0x2 -o ./26-13-0795_ -r 1 -r 3 -s 2 -b 4 job_26-13-0795_wCSV_NORMALIZED_DISTANCE: cd $(WORKDIR)/26-13-0795;c3d 26-13-0795_NORMALIZED_DISTANCE.nii.gz 26-13-0795_labels.nii.gz -lstat > 26-13-0795_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/26-13-0795;sed -i "1,2d" 26-13-0795_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/26-13-0795;sed "s/\s\+/,/g" 26-13-0795_NORMALIZED_DISTANCE.txt > 26-13-0795_NORMALIZED_DISTANCE.csv cd $(WORKDIR)/26-13-0795;sed -i "s/^/26-13-0795_NORMALIZED_DISTANCE,/" 26-13-0795_NORMALIZED_DISTANCE.csv job_26-13-0795_wCSV_pre_ATROPOS_GMM: cd $(WORKDIR)/26-13-0795;c3d 26-13-0795_pre_ATROPOS_GMM.nii.gz 26-13-0795_labels.nii.gz -lstat > 26-13-0795_pre_ATROPOS_GMM.txt cd $(WORKDIR)/26-13-0795;sed -i "1,2d" 26-13-0795_pre_ATROPOS_GMM.txt cd $(WORKDIR)/26-13-0795;sed "s/\s\+/,/g" 26-13-0795_pre_ATROPOS_GMM.txt > 26-13-0795_pre_ATROPOS_GMM.csv cd $(WORKDIR)/26-13-0795;sed -i "s/^/26-13-0795_pre_ATROPOS_GMM,/" 26-13-0795_pre_ATROPOS_GMM.csv job_26-13-0795_wCSV_pre_ATROPOS_GMM_ECCENTRICITY: cd $(WORKDIR)/26-13-0795;c3d 26-13-0795_pre_ATROPOS_GMM_ECCENTRICITY.nii.gz 26-13-0795_labels.nii.gz -lstat > 26-13-0795_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/26-13-0795;sed -i "1,2d" 26-13-0795_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/26-13-0795;sed "s/\s\+/,/g" 26-13-0795_pre_ATROPOS_GMM_ECCENTRICITY.txt > 26-13-0795_pre_ATROPOS_GMM_ECCENTRICITY.csv cd $(WORKDIR)/26-13-0795;sed -i "s/^/26-13-0795_pre_ATROPOS_GMM_ECCENTRICITY,/" 26-13-0795_pre_ATROPOS_GMM_ECCENTRICITY.csv job_26-13-0795_wCSV_pre_ATROPOS_GMM_ELONGATION: cd $(WORKDIR)/26-13-0795;c3d 26-13-0795_pre_ATROPOS_GMM_ELONGATION.nii.gz 26-13-0795_labels.nii.gz -lstat > 26-13-0795_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/26-13-0795;sed -i "1,2d" 26-13-0795_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/26-13-0795;sed "s/\s\+/,/g" 26-13-0795_pre_ATROPOS_GMM_ELONGATION.txt > 26-13-0795_pre_ATROPOS_GMM_ELONGATION.csv cd $(WORKDIR)/26-13-0795;sed -i "s/^/26-13-0795_pre_ATROPOS_GMM_ELONGATION,/" 26-13-0795_pre_ATROPOS_GMM_ELONGATION.csv job_26-13-0795_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE: cd $(WORKDIR)/26-13-0795;c3d 26-13-0795_pre_ATROPOS_GMM_LABEL3_DISTANCE.nii.gz 26-13-0795_labels.nii.gz -lstat > 26-13-0795_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/26-13-0795;sed -i "1,2d" 26-13-0795_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/26-13-0795;sed "s/\s\+/,/g" 26-13-0795_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt > 26-13-0795_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv cd $(WORKDIR)/26-13-0795;sed -i "s/^/26-13-0795_pre_ATROPOS_GMM_LABEL3_DISTANCE,/" 26-13-0795_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv job_26-13-0795_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME: cd $(WORKDIR)/26-13-0795;c3d 26-13-0795_pre_ATROPOS_GMM_PHYSICAL_VOLUME.nii.gz 26-13-0795_labels.nii.gz -lstat > 26-13-0795_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/26-13-0795;sed -i "1,2d" 26-13-0795_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/26-13-0795;sed "s/\s\+/,/g" 26-13-0795_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt > 26-13-0795_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv cd $(WORKDIR)/26-13-0795;sed -i "s/^/26-13-0795_pre_ATROPOS_GMM_PHYSICAL_VOLUME,/" 26-13-0795_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv job_26-13-0795_wCSV_pre_ATROPOS_GMM_POSTERIORS1: cd $(WORKDIR)/26-13-0795;c3d 26-13-0795_pre_ATROPOS_GMM_POSTERIORS1.nii.gz 26-13-0795_labels.nii.gz -lstat > 26-13-0795_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/26-13-0795;sed -i "1,2d" 26-13-0795_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/26-13-0795;sed "s/\s\+/,/g" 26-13-0795_pre_ATROPOS_GMM_POSTERIORS1.txt > 26-13-0795_pre_ATROPOS_GMM_POSTERIORS1.csv cd $(WORKDIR)/26-13-0795;sed -i "s/^/26-13-0795_pre_ATROPOS_GMM_POSTERIORS1,/" 26-13-0795_pre_ATROPOS_GMM_POSTERIORS1.csv job_26-13-0795_wCSV_pre_ATROPOS_GMM_POSTERIORS2: cd $(WORKDIR)/26-13-0795;c3d 26-13-0795_pre_ATROPOS_GMM_POSTERIORS2.nii.gz 26-13-0795_labels.nii.gz -lstat > 26-13-0795_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/26-13-0795;sed -i "1,2d" 26-13-0795_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/26-13-0795;sed "s/\s\+/,/g" 26-13-0795_pre_ATROPOS_GMM_POSTERIORS2.txt > 26-13-0795_pre_ATROPOS_GMM_POSTERIORS2.csv cd $(WORKDIR)/26-13-0795;sed -i "s/^/26-13-0795_pre_ATROPOS_GMM_POSTERIORS2,/" 26-13-0795_pre_ATROPOS_GMM_POSTERIORS2.csv job_26-13-0795_wCSV_pre_ATROPOS_GMM_POSTERIORS3: cd $(WORKDIR)/26-13-0795;c3d 26-13-0795_pre_ATROPOS_GMM_POSTERIORS3.nii.gz 26-13-0795_labels.nii.gz -lstat > 26-13-0795_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/26-13-0795;sed -i "1,2d" 26-13-0795_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/26-13-0795;sed "s/\s\+/,/g" 26-13-0795_pre_ATROPOS_GMM_POSTERIORS3.txt > 26-13-0795_pre_ATROPOS_GMM_POSTERIORS3.csv cd $(WORKDIR)/26-13-0795;sed -i "s/^/26-13-0795_pre_ATROPOS_GMM_POSTERIORS3,/" 26-13-0795_pre_ATROPOS_GMM_POSTERIORS3.csv job_26-13-0795_wCSV_pre_ATROPOS_GMM_POSTERIORS4: cd $(WORKDIR)/26-13-0795;c3d 26-13-0795_pre_ATROPOS_GMM_POSTERIORS4.nii.gz 26-13-0795_labels.nii.gz -lstat > 26-13-0795_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/26-13-0795;sed -i "1,2d" 26-13-0795_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/26-13-0795;sed "s/\s\+/,/g" 26-13-0795_pre_ATROPOS_GMM_POSTERIORS4.txt > 26-13-0795_pre_ATROPOS_GMM_POSTERIORS4.csv cd $(WORKDIR)/26-13-0795;sed -i "s/^/26-13-0795_pre_ATROPOS_GMM_POSTERIORS4,/" 26-13-0795_pre_ATROPOS_GMM_POSTERIORS4.csv job_26-13-0795_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO: cd $(WORKDIR)/26-13-0795;c3d 26-13-0795_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.nii.gz 26-13-0795_labels.nii.gz -lstat > 26-13-0795_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/26-13-0795;sed -i "1,2d" 26-13-0795_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/26-13-0795;sed "s/\s\+/,/g" 26-13-0795_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt > 26-13-0795_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv cd $(WORKDIR)/26-13-0795;sed -i "s/^/26-13-0795_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO,/" 26-13-0795_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv job_26-13-0795_wCSV_pre_ENTROPY_RADIUS_1: cd $(WORKDIR)/26-13-0795;c3d 26-13-0795_pre_ENTROPY_RADIUS_1.nii.gz 26-13-0795_labels.nii.gz -lstat > 26-13-0795_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/26-13-0795;sed -i "1,2d" 26-13-0795_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/26-13-0795;sed "s/\s\+/,/g" 26-13-0795_pre_ENTROPY_RADIUS_1.txt > 26-13-0795_pre_ENTROPY_RADIUS_1.csv cd $(WORKDIR)/26-13-0795;sed -i "s/^/26-13-0795_pre_ENTROPY_RADIUS_1,/" 26-13-0795_pre_ENTROPY_RADIUS_1.csv job_26-13-0795_wCSV_pre_ENTROPY_RADIUS_3: cd $(WORKDIR)/26-13-0795;c3d 26-13-0795_pre_ENTROPY_RADIUS_3.nii.gz 26-13-0795_labels.nii.gz -lstat > 26-13-0795_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/26-13-0795;sed -i "1,2d" 26-13-0795_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/26-13-0795;sed "s/\s\+/,/g" 26-13-0795_pre_ENTROPY_RADIUS_3.txt > 26-13-0795_pre_ENTROPY_RADIUS_3.csv cd $(WORKDIR)/26-13-0795;sed -i "s/^/26-13-0795_pre_ENTROPY_RADIUS_3,/" 26-13-0795_pre_ENTROPY_RADIUS_3.csv job_26-13-0795_wCSV_pre_MEAN_RADIUS_1: cd $(WORKDIR)/26-13-0795;c3d 26-13-0795_pre_MEAN_RADIUS_1.nii.gz 26-13-0795_labels.nii.gz -lstat > 26-13-0795_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/26-13-0795;sed -i "1,2d" 26-13-0795_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/26-13-0795;sed "s/\s\+/,/g" 26-13-0795_pre_MEAN_RADIUS_1.txt > 26-13-0795_pre_MEAN_RADIUS_1.csv cd $(WORKDIR)/26-13-0795;sed -i "s/^/26-13-0795_pre_MEAN_RADIUS_1,/" 26-13-0795_pre_MEAN_RADIUS_1.csv job_26-13-0795_wCSV_pre_MEAN_RADIUS_3: cd $(WORKDIR)/26-13-0795;c3d 26-13-0795_pre_MEAN_RADIUS_3.nii.gz 26-13-0795_labels.nii.gz -lstat > 26-13-0795_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/26-13-0795;sed -i "1,2d" 26-13-0795_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/26-13-0795;sed "s/\s\+/,/g" 26-13-0795_pre_MEAN_RADIUS_3.txt > 26-13-0795_pre_MEAN_RADIUS_3.csv cd $(WORKDIR)/26-13-0795;sed -i "s/^/26-13-0795_pre_MEAN_RADIUS_3,/" 26-13-0795_pre_MEAN_RADIUS_3.csv job_26-13-0795_wCSV_pre_NORMALIZED: cd $(WORKDIR)/26-13-0795;c3d 26-13-0795_pre_NORMALIZED.nii.gz 26-13-0795_labels.nii.gz -lstat > 26-13-0795_pre_NORMALIZED.txt cd $(WORKDIR)/26-13-0795;sed -i "1,2d" 26-13-0795_pre_NORMALIZED.txt cd $(WORKDIR)/26-13-0795;sed "s/\s\+/,/g" 26-13-0795_pre_NORMALIZED.txt > 26-13-0795_pre_NORMALIZED.csv cd $(WORKDIR)/26-13-0795;sed -i "s/^/26-13-0795_pre_NORMALIZED,/" 26-13-0795_pre_NORMALIZED.csv job_26-13-0795_wCSV_pre_SIGMA_RADIUS_1: cd $(WORKDIR)/26-13-0795;c3d 26-13-0795_pre_SIGMA_RADIUS_1.nii.gz 26-13-0795_labels.nii.gz -lstat > 26-13-0795_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/26-13-0795;sed -i "1,2d" 26-13-0795_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/26-13-0795;sed "s/\s\+/,/g" 26-13-0795_pre_SIGMA_RADIUS_1.txt > 26-13-0795_pre_SIGMA_RADIUS_1.csv cd $(WORKDIR)/26-13-0795;sed -i "s/^/26-13-0795_pre_SIGMA_RADIUS_1,/" 26-13-0795_pre_SIGMA_RADIUS_1.csv job_26-13-0795_wCSV_pre_SIGMA_RADIUS_3: cd $(WORKDIR)/26-13-0795;c3d 26-13-0795_pre_SIGMA_RADIUS_3.nii.gz 26-13-0795_labels.nii.gz -lstat > 26-13-0795_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/26-13-0795;sed -i "1,2d" 26-13-0795_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/26-13-0795;sed "s/\s\+/,/g" 26-13-0795_pre_SIGMA_RADIUS_3.txt > 26-13-0795_pre_SIGMA_RADIUS_3.csv cd $(WORKDIR)/26-13-0795;sed -i "s/^/26-13-0795_pre_SIGMA_RADIUS_3,/" 26-13-0795_pre_SIGMA_RADIUS_3.csv job_26-13-0795_wCSV_pre_SKEWNESS_RADIUS_1: cd $(WORKDIR)/26-13-0795;c3d 26-13-0795_pre_SKEWNESS_RADIUS_1.nii.gz 26-13-0795_labels.nii.gz -lstat > 26-13-0795_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/26-13-0795;sed -i "1,2d" 26-13-0795_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/26-13-0795;sed "s/\s\+/,/g" 26-13-0795_pre_SKEWNESS_RADIUS_1.txt > 26-13-0795_pre_SKEWNESS_RADIUS_1.csv cd $(WORKDIR)/26-13-0795;sed -i "s/^/26-13-0795_pre_SKEWNESS_RADIUS_1,/" 26-13-0795_pre_SKEWNESS_RADIUS_1.csv job_26-13-0795_wCSV_pre_SKEWNESS_RADIUS_3: cd $(WORKDIR)/26-13-0795;c3d 26-13-0795_pre_SKEWNESS_RADIUS_3.nii.gz 26-13-0795_labels.nii.gz -lstat > 26-13-0795_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/26-13-0795;sed -i "1,2d" 26-13-0795_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/26-13-0795;sed "s/\s\+/,/g" 26-13-0795_pre_SKEWNESS_RADIUS_3.txt > 26-13-0795_pre_SKEWNESS_RADIUS_3.csv cd $(WORKDIR)/26-13-0795;sed -i "s/^/26-13-0795_pre_SKEWNESS_RADIUS_3,/" 26-13-0795_pre_SKEWNESS_RADIUS_3.csv job_26-13-0795_wCSV_pre__DIFFERENCE: cd $(WORKDIR)/26-13-0795;c3d 26-13-0795_pre__DIFFERENCE.nii.gz 26-13-0795_labels.nii.gz -lstat > 26-13-0795_pre__DIFFERENCE.txt cd $(WORKDIR)/26-13-0795;sed -i "1,2d" 26-13-0795_pre__DIFFERENCE.txt cd $(WORKDIR)/26-13-0795;sed "s/\s\+/,/g" 26-13-0795_pre__DIFFERENCE.txt > 26-13-0795_pre__DIFFERENCE.csv cd $(WORKDIR)/26-13-0795;sed -i "s/^/26-13-0795_pre__DIFFERENCE,/" 26-13-0795_pre__DIFFERENCE.csv job_27-13-0797_crFI: cd $(WORKDIR)/27-13-0797;c3d 27-13-0797_grey.nii.gz 27-13-0797_labels.nii.gz -copy-transform -o 27-13-0797_labels.nii.gz cd $(WORKDIR)/27-13-0797;c3d 27-13-0797_grey.nii.gz -orient RAI -o 27-13-0797_grey.nii.gz cd $(WORKDIR)/27-13-0797;c3d 27-13-0797_labels.nii.gz -orient RAI -o 27-13-0797_labels.nii.gz cd $(WORKDIR)/27-13-0797;c3d 27-13-0797_labels.nii.gz -binarize -o 27-13-0797_mask.nii.gz cd $(WORKDIR)/27-13-0797;../createFeatureImagesOvary.sh -d 3 -x 27-13-0797_mask.nii.gz -l3 -n pre -a 27-13-0797_grey.nii.gz -f 0x2 -o ./27-13-0797_ -r 1 -r 3 -s 2 -b 4 job_27-13-0797_wCSV_NORMALIZED_DISTANCE: cd $(WORKDIR)/27-13-0797;c3d 27-13-0797_NORMALIZED_DISTANCE.nii.gz 27-13-0797_labels.nii.gz -lstat > 27-13-0797_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/27-13-0797;sed -i "1,2d" 27-13-0797_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/27-13-0797;sed "s/\s\+/,/g" 27-13-0797_NORMALIZED_DISTANCE.txt > 27-13-0797_NORMALIZED_DISTANCE.csv cd $(WORKDIR)/27-13-0797;sed -i "s/^/27-13-0797_NORMALIZED_DISTANCE,/" 27-13-0797_NORMALIZED_DISTANCE.csv job_27-13-0797_wCSV_pre_ATROPOS_GMM: cd $(WORKDIR)/27-13-0797;c3d 27-13-0797_pre_ATROPOS_GMM.nii.gz 27-13-0797_labels.nii.gz -lstat > 27-13-0797_pre_ATROPOS_GMM.txt cd $(WORKDIR)/27-13-0797;sed -i "1,2d" 27-13-0797_pre_ATROPOS_GMM.txt cd $(WORKDIR)/27-13-0797;sed "s/\s\+/,/g" 27-13-0797_pre_ATROPOS_GMM.txt > 27-13-0797_pre_ATROPOS_GMM.csv cd $(WORKDIR)/27-13-0797;sed -i "s/^/27-13-0797_pre_ATROPOS_GMM,/" 27-13-0797_pre_ATROPOS_GMM.csv job_27-13-0797_wCSV_pre_ATROPOS_GMM_ECCENTRICITY: cd $(WORKDIR)/27-13-0797;c3d 27-13-0797_pre_ATROPOS_GMM_ECCENTRICITY.nii.gz 27-13-0797_labels.nii.gz -lstat > 27-13-0797_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/27-13-0797;sed -i "1,2d" 27-13-0797_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/27-13-0797;sed "s/\s\+/,/g" 27-13-0797_pre_ATROPOS_GMM_ECCENTRICITY.txt > 27-13-0797_pre_ATROPOS_GMM_ECCENTRICITY.csv cd $(WORKDIR)/27-13-0797;sed -i "s/^/27-13-0797_pre_ATROPOS_GMM_ECCENTRICITY,/" 27-13-0797_pre_ATROPOS_GMM_ECCENTRICITY.csv job_27-13-0797_wCSV_pre_ATROPOS_GMM_ELONGATION: cd $(WORKDIR)/27-13-0797;c3d 27-13-0797_pre_ATROPOS_GMM_ELONGATION.nii.gz 27-13-0797_labels.nii.gz -lstat > 27-13-0797_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/27-13-0797;sed -i "1,2d" 27-13-0797_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/27-13-0797;sed "s/\s\+/,/g" 27-13-0797_pre_ATROPOS_GMM_ELONGATION.txt > 27-13-0797_pre_ATROPOS_GMM_ELONGATION.csv cd $(WORKDIR)/27-13-0797;sed -i "s/^/27-13-0797_pre_ATROPOS_GMM_ELONGATION,/" 27-13-0797_pre_ATROPOS_GMM_ELONGATION.csv job_27-13-0797_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE: cd $(WORKDIR)/27-13-0797;c3d 27-13-0797_pre_ATROPOS_GMM_LABEL3_DISTANCE.nii.gz 27-13-0797_labels.nii.gz -lstat > 27-13-0797_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/27-13-0797;sed -i "1,2d" 27-13-0797_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/27-13-0797;sed "s/\s\+/,/g" 27-13-0797_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt > 27-13-0797_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv cd $(WORKDIR)/27-13-0797;sed -i "s/^/27-13-0797_pre_ATROPOS_GMM_LABEL3_DISTANCE,/" 27-13-0797_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv job_27-13-0797_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME: cd $(WORKDIR)/27-13-0797;c3d 27-13-0797_pre_ATROPOS_GMM_PHYSICAL_VOLUME.nii.gz 27-13-0797_labels.nii.gz -lstat > 27-13-0797_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/27-13-0797;sed -i "1,2d" 27-13-0797_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/27-13-0797;sed "s/\s\+/,/g" 27-13-0797_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt > 27-13-0797_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv cd $(WORKDIR)/27-13-0797;sed -i "s/^/27-13-0797_pre_ATROPOS_GMM_PHYSICAL_VOLUME,/" 27-13-0797_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv job_27-13-0797_wCSV_pre_ATROPOS_GMM_POSTERIORS1: cd $(WORKDIR)/27-13-0797;c3d 27-13-0797_pre_ATROPOS_GMM_POSTERIORS1.nii.gz 27-13-0797_labels.nii.gz -lstat > 27-13-0797_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/27-13-0797;sed -i "1,2d" 27-13-0797_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/27-13-0797;sed "s/\s\+/,/g" 27-13-0797_pre_ATROPOS_GMM_POSTERIORS1.txt > 27-13-0797_pre_ATROPOS_GMM_POSTERIORS1.csv cd $(WORKDIR)/27-13-0797;sed -i "s/^/27-13-0797_pre_ATROPOS_GMM_POSTERIORS1,/" 27-13-0797_pre_ATROPOS_GMM_POSTERIORS1.csv job_27-13-0797_wCSV_pre_ATROPOS_GMM_POSTERIORS2: cd $(WORKDIR)/27-13-0797;c3d 27-13-0797_pre_ATROPOS_GMM_POSTERIORS2.nii.gz 27-13-0797_labels.nii.gz -lstat > 27-13-0797_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/27-13-0797;sed -i "1,2d" 27-13-0797_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/27-13-0797;sed "s/\s\+/,/g" 27-13-0797_pre_ATROPOS_GMM_POSTERIORS2.txt > 27-13-0797_pre_ATROPOS_GMM_POSTERIORS2.csv cd $(WORKDIR)/27-13-0797;sed -i "s/^/27-13-0797_pre_ATROPOS_GMM_POSTERIORS2,/" 27-13-0797_pre_ATROPOS_GMM_POSTERIORS2.csv job_27-13-0797_wCSV_pre_ATROPOS_GMM_POSTERIORS3: cd $(WORKDIR)/27-13-0797;c3d 27-13-0797_pre_ATROPOS_GMM_POSTERIORS3.nii.gz 27-13-0797_labels.nii.gz -lstat > 27-13-0797_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/27-13-0797;sed -i "1,2d" 27-13-0797_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/27-13-0797;sed "s/\s\+/,/g" 27-13-0797_pre_ATROPOS_GMM_POSTERIORS3.txt > 27-13-0797_pre_ATROPOS_GMM_POSTERIORS3.csv cd $(WORKDIR)/27-13-0797;sed -i "s/^/27-13-0797_pre_ATROPOS_GMM_POSTERIORS3,/" 27-13-0797_pre_ATROPOS_GMM_POSTERIORS3.csv job_27-13-0797_wCSV_pre_ATROPOS_GMM_POSTERIORS4: cd $(WORKDIR)/27-13-0797;c3d 27-13-0797_pre_ATROPOS_GMM_POSTERIORS4.nii.gz 27-13-0797_labels.nii.gz -lstat > 27-13-0797_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/27-13-0797;sed -i "1,2d" 27-13-0797_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/27-13-0797;sed "s/\s\+/,/g" 27-13-0797_pre_ATROPOS_GMM_POSTERIORS4.txt > 27-13-0797_pre_ATROPOS_GMM_POSTERIORS4.csv cd $(WORKDIR)/27-13-0797;sed -i "s/^/27-13-0797_pre_ATROPOS_GMM_POSTERIORS4,/" 27-13-0797_pre_ATROPOS_GMM_POSTERIORS4.csv job_27-13-0797_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO: cd $(WORKDIR)/27-13-0797;c3d 27-13-0797_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.nii.gz 27-13-0797_labels.nii.gz -lstat > 27-13-0797_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/27-13-0797;sed -i "1,2d" 27-13-0797_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/27-13-0797;sed "s/\s\+/,/g" 27-13-0797_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt > 27-13-0797_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv cd $(WORKDIR)/27-13-0797;sed -i "s/^/27-13-0797_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO,/" 27-13-0797_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv job_27-13-0797_wCSV_pre_ENTROPY_RADIUS_1: cd $(WORKDIR)/27-13-0797;c3d 27-13-0797_pre_ENTROPY_RADIUS_1.nii.gz 27-13-0797_labels.nii.gz -lstat > 27-13-0797_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/27-13-0797;sed -i "1,2d" 27-13-0797_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/27-13-0797;sed "s/\s\+/,/g" 27-13-0797_pre_ENTROPY_RADIUS_1.txt > 27-13-0797_pre_ENTROPY_RADIUS_1.csv cd $(WORKDIR)/27-13-0797;sed -i "s/^/27-13-0797_pre_ENTROPY_RADIUS_1,/" 27-13-0797_pre_ENTROPY_RADIUS_1.csv job_27-13-0797_wCSV_pre_ENTROPY_RADIUS_3: cd $(WORKDIR)/27-13-0797;c3d 27-13-0797_pre_ENTROPY_RADIUS_3.nii.gz 27-13-0797_labels.nii.gz -lstat > 27-13-0797_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/27-13-0797;sed -i "1,2d" 27-13-0797_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/27-13-0797;sed "s/\s\+/,/g" 27-13-0797_pre_ENTROPY_RADIUS_3.txt > 27-13-0797_pre_ENTROPY_RADIUS_3.csv cd $(WORKDIR)/27-13-0797;sed -i "s/^/27-13-0797_pre_ENTROPY_RADIUS_3,/" 27-13-0797_pre_ENTROPY_RADIUS_3.csv job_27-13-0797_wCSV_pre_MEAN_RADIUS_1: cd $(WORKDIR)/27-13-0797;c3d 27-13-0797_pre_MEAN_RADIUS_1.nii.gz 27-13-0797_labels.nii.gz -lstat > 27-13-0797_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/27-13-0797;sed -i "1,2d" 27-13-0797_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/27-13-0797;sed "s/\s\+/,/g" 27-13-0797_pre_MEAN_RADIUS_1.txt > 27-13-0797_pre_MEAN_RADIUS_1.csv cd $(WORKDIR)/27-13-0797;sed -i "s/^/27-13-0797_pre_MEAN_RADIUS_1,/" 27-13-0797_pre_MEAN_RADIUS_1.csv job_27-13-0797_wCSV_pre_MEAN_RADIUS_3: cd $(WORKDIR)/27-13-0797;c3d 27-13-0797_pre_MEAN_RADIUS_3.nii.gz 27-13-0797_labels.nii.gz -lstat > 27-13-0797_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/27-13-0797;sed -i "1,2d" 27-13-0797_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/27-13-0797;sed "s/\s\+/,/g" 27-13-0797_pre_MEAN_RADIUS_3.txt > 27-13-0797_pre_MEAN_RADIUS_3.csv cd $(WORKDIR)/27-13-0797;sed -i "s/^/27-13-0797_pre_MEAN_RADIUS_3,/" 27-13-0797_pre_MEAN_RADIUS_3.csv job_27-13-0797_wCSV_pre_NORMALIZED: cd $(WORKDIR)/27-13-0797;c3d 27-13-0797_pre_NORMALIZED.nii.gz 27-13-0797_labels.nii.gz -lstat > 27-13-0797_pre_NORMALIZED.txt cd $(WORKDIR)/27-13-0797;sed -i "1,2d" 27-13-0797_pre_NORMALIZED.txt cd $(WORKDIR)/27-13-0797;sed "s/\s\+/,/g" 27-13-0797_pre_NORMALIZED.txt > 27-13-0797_pre_NORMALIZED.csv cd $(WORKDIR)/27-13-0797;sed -i "s/^/27-13-0797_pre_NORMALIZED,/" 27-13-0797_pre_NORMALIZED.csv job_27-13-0797_wCSV_pre_SIGMA_RADIUS_1: cd $(WORKDIR)/27-13-0797;c3d 27-13-0797_pre_SIGMA_RADIUS_1.nii.gz 27-13-0797_labels.nii.gz -lstat > 27-13-0797_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/27-13-0797;sed -i "1,2d" 27-13-0797_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/27-13-0797;sed "s/\s\+/,/g" 27-13-0797_pre_SIGMA_RADIUS_1.txt > 27-13-0797_pre_SIGMA_RADIUS_1.csv cd $(WORKDIR)/27-13-0797;sed -i "s/^/27-13-0797_pre_SIGMA_RADIUS_1,/" 27-13-0797_pre_SIGMA_RADIUS_1.csv job_27-13-0797_wCSV_pre_SIGMA_RADIUS_3: cd $(WORKDIR)/27-13-0797;c3d 27-13-0797_pre_SIGMA_RADIUS_3.nii.gz 27-13-0797_labels.nii.gz -lstat > 27-13-0797_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/27-13-0797;sed -i "1,2d" 27-13-0797_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/27-13-0797;sed "s/\s\+/,/g" 27-13-0797_pre_SIGMA_RADIUS_3.txt > 27-13-0797_pre_SIGMA_RADIUS_3.csv cd $(WORKDIR)/27-13-0797;sed -i "s/^/27-13-0797_pre_SIGMA_RADIUS_3,/" 27-13-0797_pre_SIGMA_RADIUS_3.csv job_27-13-0797_wCSV_pre_SKEWNESS_RADIUS_1: cd $(WORKDIR)/27-13-0797;c3d 27-13-0797_pre_SKEWNESS_RADIUS_1.nii.gz 27-13-0797_labels.nii.gz -lstat > 27-13-0797_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/27-13-0797;sed -i "1,2d" 27-13-0797_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/27-13-0797;sed "s/\s\+/,/g" 27-13-0797_pre_SKEWNESS_RADIUS_1.txt > 27-13-0797_pre_SKEWNESS_RADIUS_1.csv cd $(WORKDIR)/27-13-0797;sed -i "s/^/27-13-0797_pre_SKEWNESS_RADIUS_1,/" 27-13-0797_pre_SKEWNESS_RADIUS_1.csv job_27-13-0797_wCSV_pre_SKEWNESS_RADIUS_3: cd $(WORKDIR)/27-13-0797;c3d 27-13-0797_pre_SKEWNESS_RADIUS_3.nii.gz 27-13-0797_labels.nii.gz -lstat > 27-13-0797_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/27-13-0797;sed -i "1,2d" 27-13-0797_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/27-13-0797;sed "s/\s\+/,/g" 27-13-0797_pre_SKEWNESS_RADIUS_3.txt > 27-13-0797_pre_SKEWNESS_RADIUS_3.csv cd $(WORKDIR)/27-13-0797;sed -i "s/^/27-13-0797_pre_SKEWNESS_RADIUS_3,/" 27-13-0797_pre_SKEWNESS_RADIUS_3.csv job_27-13-0797_wCSV_pre__DIFFERENCE: cd $(WORKDIR)/27-13-0797;c3d 27-13-0797_pre__DIFFERENCE.nii.gz 27-13-0797_labels.nii.gz -lstat > 27-13-0797_pre__DIFFERENCE.txt cd $(WORKDIR)/27-13-0797;sed -i "1,2d" 27-13-0797_pre__DIFFERENCE.txt cd $(WORKDIR)/27-13-0797;sed "s/\s\+/,/g" 27-13-0797_pre__DIFFERENCE.txt > 27-13-0797_pre__DIFFERENCE.csv cd $(WORKDIR)/27-13-0797;sed -i "s/^/27-13-0797_pre__DIFFERENCE,/" 27-13-0797_pre__DIFFERENCE.csv job_28-13-0799_crFI: cd $(WORKDIR)/28-13-0799;c3d 28-13-0799_grey.nii.gz 28-13-0799_labels.nii.gz -copy-transform -o 28-13-0799_labels.nii.gz cd $(WORKDIR)/28-13-0799;c3d 28-13-0799_grey.nii.gz -orient RAI -o 28-13-0799_grey.nii.gz cd $(WORKDIR)/28-13-0799;c3d 28-13-0799_labels.nii.gz -orient RAI -o 28-13-0799_labels.nii.gz cd $(WORKDIR)/28-13-0799;c3d 28-13-0799_labels.nii.gz -binarize -o 28-13-0799_mask.nii.gz cd $(WORKDIR)/28-13-0799;../createFeatureImagesOvary.sh -d 3 -x 28-13-0799_mask.nii.gz -l3 -n pre -a 28-13-0799_grey.nii.gz -f 0x2 -o ./28-13-0799_ -r 1 -r 3 -s 2 -b 4 job_28-13-0799_wCSV_NORMALIZED_DISTANCE: cd $(WORKDIR)/28-13-0799;c3d 28-13-0799_NORMALIZED_DISTANCE.nii.gz 28-13-0799_labels.nii.gz -lstat > 28-13-0799_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/28-13-0799;sed -i "1,2d" 28-13-0799_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/28-13-0799;sed "s/\s\+/,/g" 28-13-0799_NORMALIZED_DISTANCE.txt > 28-13-0799_NORMALIZED_DISTANCE.csv cd $(WORKDIR)/28-13-0799;sed -i "s/^/28-13-0799_NORMALIZED_DISTANCE,/" 28-13-0799_NORMALIZED_DISTANCE.csv job_28-13-0799_wCSV_pre_ATROPOS_GMM: cd $(WORKDIR)/28-13-0799;c3d 28-13-0799_pre_ATROPOS_GMM.nii.gz 28-13-0799_labels.nii.gz -lstat > 28-13-0799_pre_ATROPOS_GMM.txt cd $(WORKDIR)/28-13-0799;sed -i "1,2d" 28-13-0799_pre_ATROPOS_GMM.txt cd $(WORKDIR)/28-13-0799;sed "s/\s\+/,/g" 28-13-0799_pre_ATROPOS_GMM.txt > 28-13-0799_pre_ATROPOS_GMM.csv cd $(WORKDIR)/28-13-0799;sed -i "s/^/28-13-0799_pre_ATROPOS_GMM,/" 28-13-0799_pre_ATROPOS_GMM.csv job_28-13-0799_wCSV_pre_ATROPOS_GMM_ECCENTRICITY: cd $(WORKDIR)/28-13-0799;c3d 28-13-0799_pre_ATROPOS_GMM_ECCENTRICITY.nii.gz 28-13-0799_labels.nii.gz -lstat > 28-13-0799_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/28-13-0799;sed -i "1,2d" 28-13-0799_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/28-13-0799;sed "s/\s\+/,/g" 28-13-0799_pre_ATROPOS_GMM_ECCENTRICITY.txt > 28-13-0799_pre_ATROPOS_GMM_ECCENTRICITY.csv cd $(WORKDIR)/28-13-0799;sed -i "s/^/28-13-0799_pre_ATROPOS_GMM_ECCENTRICITY,/" 28-13-0799_pre_ATROPOS_GMM_ECCENTRICITY.csv job_28-13-0799_wCSV_pre_ATROPOS_GMM_ELONGATION: cd $(WORKDIR)/28-13-0799;c3d 28-13-0799_pre_ATROPOS_GMM_ELONGATION.nii.gz 28-13-0799_labels.nii.gz -lstat > 28-13-0799_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/28-13-0799;sed -i "1,2d" 28-13-0799_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/28-13-0799;sed "s/\s\+/,/g" 28-13-0799_pre_ATROPOS_GMM_ELONGATION.txt > 28-13-0799_pre_ATROPOS_GMM_ELONGATION.csv cd $(WORKDIR)/28-13-0799;sed -i "s/^/28-13-0799_pre_ATROPOS_GMM_ELONGATION,/" 28-13-0799_pre_ATROPOS_GMM_ELONGATION.csv job_28-13-0799_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE: cd $(WORKDIR)/28-13-0799;c3d 28-13-0799_pre_ATROPOS_GMM_LABEL3_DISTANCE.nii.gz 28-13-0799_labels.nii.gz -lstat > 28-13-0799_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/28-13-0799;sed -i "1,2d" 28-13-0799_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/28-13-0799;sed "s/\s\+/,/g" 28-13-0799_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt > 28-13-0799_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv cd $(WORKDIR)/28-13-0799;sed -i "s/^/28-13-0799_pre_ATROPOS_GMM_LABEL3_DISTANCE,/" 28-13-0799_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv job_28-13-0799_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME: cd $(WORKDIR)/28-13-0799;c3d 28-13-0799_pre_ATROPOS_GMM_PHYSICAL_VOLUME.nii.gz 28-13-0799_labels.nii.gz -lstat > 28-13-0799_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/28-13-0799;sed -i "1,2d" 28-13-0799_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/28-13-0799;sed "s/\s\+/,/g" 28-13-0799_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt > 28-13-0799_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv cd $(WORKDIR)/28-13-0799;sed -i "s/^/28-13-0799_pre_ATROPOS_GMM_PHYSICAL_VOLUME,/" 28-13-0799_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv job_28-13-0799_wCSV_pre_ATROPOS_GMM_POSTERIORS1: cd $(WORKDIR)/28-13-0799;c3d 28-13-0799_pre_ATROPOS_GMM_POSTERIORS1.nii.gz 28-13-0799_labels.nii.gz -lstat > 28-13-0799_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/28-13-0799;sed -i "1,2d" 28-13-0799_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/28-13-0799;sed "s/\s\+/,/g" 28-13-0799_pre_ATROPOS_GMM_POSTERIORS1.txt > 28-13-0799_pre_ATROPOS_GMM_POSTERIORS1.csv cd $(WORKDIR)/28-13-0799;sed -i "s/^/28-13-0799_pre_ATROPOS_GMM_POSTERIORS1,/" 28-13-0799_pre_ATROPOS_GMM_POSTERIORS1.csv job_28-13-0799_wCSV_pre_ATROPOS_GMM_POSTERIORS2: cd $(WORKDIR)/28-13-0799;c3d 28-13-0799_pre_ATROPOS_GMM_POSTERIORS2.nii.gz 28-13-0799_labels.nii.gz -lstat > 28-13-0799_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/28-13-0799;sed -i "1,2d" 28-13-0799_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/28-13-0799;sed "s/\s\+/,/g" 28-13-0799_pre_ATROPOS_GMM_POSTERIORS2.txt > 28-13-0799_pre_ATROPOS_GMM_POSTERIORS2.csv cd $(WORKDIR)/28-13-0799;sed -i "s/^/28-13-0799_pre_ATROPOS_GMM_POSTERIORS2,/" 28-13-0799_pre_ATROPOS_GMM_POSTERIORS2.csv job_28-13-0799_wCSV_pre_ATROPOS_GMM_POSTERIORS3: cd $(WORKDIR)/28-13-0799;c3d 28-13-0799_pre_ATROPOS_GMM_POSTERIORS3.nii.gz 28-13-0799_labels.nii.gz -lstat > 28-13-0799_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/28-13-0799;sed -i "1,2d" 28-13-0799_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/28-13-0799;sed "s/\s\+/,/g" 28-13-0799_pre_ATROPOS_GMM_POSTERIORS3.txt > 28-13-0799_pre_ATROPOS_GMM_POSTERIORS3.csv cd $(WORKDIR)/28-13-0799;sed -i "s/^/28-13-0799_pre_ATROPOS_GMM_POSTERIORS3,/" 28-13-0799_pre_ATROPOS_GMM_POSTERIORS3.csv job_28-13-0799_wCSV_pre_ATROPOS_GMM_POSTERIORS4: cd $(WORKDIR)/28-13-0799;c3d 28-13-0799_pre_ATROPOS_GMM_POSTERIORS4.nii.gz 28-13-0799_labels.nii.gz -lstat > 28-13-0799_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/28-13-0799;sed -i "1,2d" 28-13-0799_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/28-13-0799;sed "s/\s\+/,/g" 28-13-0799_pre_ATROPOS_GMM_POSTERIORS4.txt > 28-13-0799_pre_ATROPOS_GMM_POSTERIORS4.csv cd $(WORKDIR)/28-13-0799;sed -i "s/^/28-13-0799_pre_ATROPOS_GMM_POSTERIORS4,/" 28-13-0799_pre_ATROPOS_GMM_POSTERIORS4.csv job_28-13-0799_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO: cd $(WORKDIR)/28-13-0799;c3d 28-13-0799_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.nii.gz 28-13-0799_labels.nii.gz -lstat > 28-13-0799_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/28-13-0799;sed -i "1,2d" 28-13-0799_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/28-13-0799;sed "s/\s\+/,/g" 28-13-0799_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt > 28-13-0799_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv cd $(WORKDIR)/28-13-0799;sed -i "s/^/28-13-0799_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO,/" 28-13-0799_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv job_28-13-0799_wCSV_pre_ENTROPY_RADIUS_1: cd $(WORKDIR)/28-13-0799;c3d 28-13-0799_pre_ENTROPY_RADIUS_1.nii.gz 28-13-0799_labels.nii.gz -lstat > 28-13-0799_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/28-13-0799;sed -i "1,2d" 28-13-0799_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/28-13-0799;sed "s/\s\+/,/g" 28-13-0799_pre_ENTROPY_RADIUS_1.txt > 28-13-0799_pre_ENTROPY_RADIUS_1.csv cd $(WORKDIR)/28-13-0799;sed -i "s/^/28-13-0799_pre_ENTROPY_RADIUS_1,/" 28-13-0799_pre_ENTROPY_RADIUS_1.csv job_28-13-0799_wCSV_pre_ENTROPY_RADIUS_3: cd $(WORKDIR)/28-13-0799;c3d 28-13-0799_pre_ENTROPY_RADIUS_3.nii.gz 28-13-0799_labels.nii.gz -lstat > 28-13-0799_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/28-13-0799;sed -i "1,2d" 28-13-0799_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/28-13-0799;sed "s/\s\+/,/g" 28-13-0799_pre_ENTROPY_RADIUS_3.txt > 28-13-0799_pre_ENTROPY_RADIUS_3.csv cd $(WORKDIR)/28-13-0799;sed -i "s/^/28-13-0799_pre_ENTROPY_RADIUS_3,/" 28-13-0799_pre_ENTROPY_RADIUS_3.csv job_28-13-0799_wCSV_pre_MEAN_RADIUS_1: cd $(WORKDIR)/28-13-0799;c3d 28-13-0799_pre_MEAN_RADIUS_1.nii.gz 28-13-0799_labels.nii.gz -lstat > 28-13-0799_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/28-13-0799;sed -i "1,2d" 28-13-0799_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/28-13-0799;sed "s/\s\+/,/g" 28-13-0799_pre_MEAN_RADIUS_1.txt > 28-13-0799_pre_MEAN_RADIUS_1.csv cd $(WORKDIR)/28-13-0799;sed -i "s/^/28-13-0799_pre_MEAN_RADIUS_1,/" 28-13-0799_pre_MEAN_RADIUS_1.csv job_28-13-0799_wCSV_pre_MEAN_RADIUS_3: cd $(WORKDIR)/28-13-0799;c3d 28-13-0799_pre_MEAN_RADIUS_3.nii.gz 28-13-0799_labels.nii.gz -lstat > 28-13-0799_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/28-13-0799;sed -i "1,2d" 28-13-0799_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/28-13-0799;sed "s/\s\+/,/g" 28-13-0799_pre_MEAN_RADIUS_3.txt > 28-13-0799_pre_MEAN_RADIUS_3.csv cd $(WORKDIR)/28-13-0799;sed -i "s/^/28-13-0799_pre_MEAN_RADIUS_3,/" 28-13-0799_pre_MEAN_RADIUS_3.csv job_28-13-0799_wCSV_pre_NORMALIZED: cd $(WORKDIR)/28-13-0799;c3d 28-13-0799_pre_NORMALIZED.nii.gz 28-13-0799_labels.nii.gz -lstat > 28-13-0799_pre_NORMALIZED.txt cd $(WORKDIR)/28-13-0799;sed -i "1,2d" 28-13-0799_pre_NORMALIZED.txt cd $(WORKDIR)/28-13-0799;sed "s/\s\+/,/g" 28-13-0799_pre_NORMALIZED.txt > 28-13-0799_pre_NORMALIZED.csv cd $(WORKDIR)/28-13-0799;sed -i "s/^/28-13-0799_pre_NORMALIZED,/" 28-13-0799_pre_NORMALIZED.csv job_28-13-0799_wCSV_pre_SIGMA_RADIUS_1: cd $(WORKDIR)/28-13-0799;c3d 28-13-0799_pre_SIGMA_RADIUS_1.nii.gz 28-13-0799_labels.nii.gz -lstat > 28-13-0799_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/28-13-0799;sed -i "1,2d" 28-13-0799_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/28-13-0799;sed "s/\s\+/,/g" 28-13-0799_pre_SIGMA_RADIUS_1.txt > 28-13-0799_pre_SIGMA_RADIUS_1.csv cd $(WORKDIR)/28-13-0799;sed -i "s/^/28-13-0799_pre_SIGMA_RADIUS_1,/" 28-13-0799_pre_SIGMA_RADIUS_1.csv job_28-13-0799_wCSV_pre_SIGMA_RADIUS_3: cd $(WORKDIR)/28-13-0799;c3d 28-13-0799_pre_SIGMA_RADIUS_3.nii.gz 28-13-0799_labels.nii.gz -lstat > 28-13-0799_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/28-13-0799;sed -i "1,2d" 28-13-0799_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/28-13-0799;sed "s/\s\+/,/g" 28-13-0799_pre_SIGMA_RADIUS_3.txt > 28-13-0799_pre_SIGMA_RADIUS_3.csv cd $(WORKDIR)/28-13-0799;sed -i "s/^/28-13-0799_pre_SIGMA_RADIUS_3,/" 28-13-0799_pre_SIGMA_RADIUS_3.csv job_28-13-0799_wCSV_pre_SKEWNESS_RADIUS_1: cd $(WORKDIR)/28-13-0799;c3d 28-13-0799_pre_SKEWNESS_RADIUS_1.nii.gz 28-13-0799_labels.nii.gz -lstat > 28-13-0799_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/28-13-0799;sed -i "1,2d" 28-13-0799_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/28-13-0799;sed "s/\s\+/,/g" 28-13-0799_pre_SKEWNESS_RADIUS_1.txt > 28-13-0799_pre_SKEWNESS_RADIUS_1.csv cd $(WORKDIR)/28-13-0799;sed -i "s/^/28-13-0799_pre_SKEWNESS_RADIUS_1,/" 28-13-0799_pre_SKEWNESS_RADIUS_1.csv job_28-13-0799_wCSV_pre_SKEWNESS_RADIUS_3: cd $(WORKDIR)/28-13-0799;c3d 28-13-0799_pre_SKEWNESS_RADIUS_3.nii.gz 28-13-0799_labels.nii.gz -lstat > 28-13-0799_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/28-13-0799;sed -i "1,2d" 28-13-0799_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/28-13-0799;sed "s/\s\+/,/g" 28-13-0799_pre_SKEWNESS_RADIUS_3.txt > 28-13-0799_pre_SKEWNESS_RADIUS_3.csv cd $(WORKDIR)/28-13-0799;sed -i "s/^/28-13-0799_pre_SKEWNESS_RADIUS_3,/" 28-13-0799_pre_SKEWNESS_RADIUS_3.csv job_28-13-0799_wCSV_pre__DIFFERENCE: cd $(WORKDIR)/28-13-0799;c3d 28-13-0799_pre__DIFFERENCE.nii.gz 28-13-0799_labels.nii.gz -lstat > 28-13-0799_pre__DIFFERENCE.txt cd $(WORKDIR)/28-13-0799;sed -i "1,2d" 28-13-0799_pre__DIFFERENCE.txt cd $(WORKDIR)/28-13-0799;sed "s/\s\+/,/g" 28-13-0799_pre__DIFFERENCE.txt > 28-13-0799_pre__DIFFERENCE.csv cd $(WORKDIR)/28-13-0799;sed -i "s/^/28-13-0799_pre__DIFFERENCE,/" 28-13-0799_pre__DIFFERENCE.csv job_29-13-0800_crFI: cd $(WORKDIR)/29-13-0800;c3d 29-13-0800_grey.nii.gz 29-13-0800_labels.nii.gz -copy-transform -o 29-13-0800_labels.nii.gz cd $(WORKDIR)/29-13-0800;c3d 29-13-0800_grey.nii.gz -orient RAI -o 29-13-0800_grey.nii.gz cd $(WORKDIR)/29-13-0800;c3d 29-13-0800_labels.nii.gz -orient RAI -o 29-13-0800_labels.nii.gz cd $(WORKDIR)/29-13-0800;c3d 29-13-0800_labels.nii.gz -binarize -o 29-13-0800_mask.nii.gz cd $(WORKDIR)/29-13-0800;../createFeatureImagesOvary.sh -d 3 -x 29-13-0800_mask.nii.gz -l3 -n pre -a 29-13-0800_grey.nii.gz -f 0x2 -o ./29-13-0800_ -r 1 -r 3 -s 2 -b 4 job_29-13-0800_wCSV_NORMALIZED_DISTANCE: cd $(WORKDIR)/29-13-0800;c3d 29-13-0800_NORMALIZED_DISTANCE.nii.gz 29-13-0800_labels.nii.gz -lstat > 29-13-0800_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/29-13-0800;sed -i "1,2d" 29-13-0800_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/29-13-0800;sed "s/\s\+/,/g" 29-13-0800_NORMALIZED_DISTANCE.txt > 29-13-0800_NORMALIZED_DISTANCE.csv cd $(WORKDIR)/29-13-0800;sed -i "s/^/29-13-0800_NORMALIZED_DISTANCE,/" 29-13-0800_NORMALIZED_DISTANCE.csv job_29-13-0800_wCSV_pre_ATROPOS_GMM: cd $(WORKDIR)/29-13-0800;c3d 29-13-0800_pre_ATROPOS_GMM.nii.gz 29-13-0800_labels.nii.gz -lstat > 29-13-0800_pre_ATROPOS_GMM.txt cd $(WORKDIR)/29-13-0800;sed -i "1,2d" 29-13-0800_pre_ATROPOS_GMM.txt cd $(WORKDIR)/29-13-0800;sed "s/\s\+/,/g" 29-13-0800_pre_ATROPOS_GMM.txt > 29-13-0800_pre_ATROPOS_GMM.csv cd $(WORKDIR)/29-13-0800;sed -i "s/^/29-13-0800_pre_ATROPOS_GMM,/" 29-13-0800_pre_ATROPOS_GMM.csv job_29-13-0800_wCSV_pre_ATROPOS_GMM_ECCENTRICITY: cd $(WORKDIR)/29-13-0800;c3d 29-13-0800_pre_ATROPOS_GMM_ECCENTRICITY.nii.gz 29-13-0800_labels.nii.gz -lstat > 29-13-0800_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/29-13-0800;sed -i "1,2d" 29-13-0800_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/29-13-0800;sed "s/\s\+/,/g" 29-13-0800_pre_ATROPOS_GMM_ECCENTRICITY.txt > 29-13-0800_pre_ATROPOS_GMM_ECCENTRICITY.csv cd $(WORKDIR)/29-13-0800;sed -i "s/^/29-13-0800_pre_ATROPOS_GMM_ECCENTRICITY,/" 29-13-0800_pre_ATROPOS_GMM_ECCENTRICITY.csv job_29-13-0800_wCSV_pre_ATROPOS_GMM_ELONGATION: cd $(WORKDIR)/29-13-0800;c3d 29-13-0800_pre_ATROPOS_GMM_ELONGATION.nii.gz 29-13-0800_labels.nii.gz -lstat > 29-13-0800_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/29-13-0800;sed -i "1,2d" 29-13-0800_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/29-13-0800;sed "s/\s\+/,/g" 29-13-0800_pre_ATROPOS_GMM_ELONGATION.txt > 29-13-0800_pre_ATROPOS_GMM_ELONGATION.csv cd $(WORKDIR)/29-13-0800;sed -i "s/^/29-13-0800_pre_ATROPOS_GMM_ELONGATION,/" 29-13-0800_pre_ATROPOS_GMM_ELONGATION.csv job_29-13-0800_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE: cd $(WORKDIR)/29-13-0800;c3d 29-13-0800_pre_ATROPOS_GMM_LABEL3_DISTANCE.nii.gz 29-13-0800_labels.nii.gz -lstat > 29-13-0800_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/29-13-0800;sed -i "1,2d" 29-13-0800_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/29-13-0800;sed "s/\s\+/,/g" 29-13-0800_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt > 29-13-0800_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv cd $(WORKDIR)/29-13-0800;sed -i "s/^/29-13-0800_pre_ATROPOS_GMM_LABEL3_DISTANCE,/" 29-13-0800_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv job_29-13-0800_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME: cd $(WORKDIR)/29-13-0800;c3d 29-13-0800_pre_ATROPOS_GMM_PHYSICAL_VOLUME.nii.gz 29-13-0800_labels.nii.gz -lstat > 29-13-0800_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/29-13-0800;sed -i "1,2d" 29-13-0800_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/29-13-0800;sed "s/\s\+/,/g" 29-13-0800_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt > 29-13-0800_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv cd $(WORKDIR)/29-13-0800;sed -i "s/^/29-13-0800_pre_ATROPOS_GMM_PHYSICAL_VOLUME,/" 29-13-0800_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv job_29-13-0800_wCSV_pre_ATROPOS_GMM_POSTERIORS1: cd $(WORKDIR)/29-13-0800;c3d 29-13-0800_pre_ATROPOS_GMM_POSTERIORS1.nii.gz 29-13-0800_labels.nii.gz -lstat > 29-13-0800_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/29-13-0800;sed -i "1,2d" 29-13-0800_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/29-13-0800;sed "s/\s\+/,/g" 29-13-0800_pre_ATROPOS_GMM_POSTERIORS1.txt > 29-13-0800_pre_ATROPOS_GMM_POSTERIORS1.csv cd $(WORKDIR)/29-13-0800;sed -i "s/^/29-13-0800_pre_ATROPOS_GMM_POSTERIORS1,/" 29-13-0800_pre_ATROPOS_GMM_POSTERIORS1.csv job_29-13-0800_wCSV_pre_ATROPOS_GMM_POSTERIORS2: cd $(WORKDIR)/29-13-0800;c3d 29-13-0800_pre_ATROPOS_GMM_POSTERIORS2.nii.gz 29-13-0800_labels.nii.gz -lstat > 29-13-0800_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/29-13-0800;sed -i "1,2d" 29-13-0800_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/29-13-0800;sed "s/\s\+/,/g" 29-13-0800_pre_ATROPOS_GMM_POSTERIORS2.txt > 29-13-0800_pre_ATROPOS_GMM_POSTERIORS2.csv cd $(WORKDIR)/29-13-0800;sed -i "s/^/29-13-0800_pre_ATROPOS_GMM_POSTERIORS2,/" 29-13-0800_pre_ATROPOS_GMM_POSTERIORS2.csv job_29-13-0800_wCSV_pre_ATROPOS_GMM_POSTERIORS3: cd $(WORKDIR)/29-13-0800;c3d 29-13-0800_pre_ATROPOS_GMM_POSTERIORS3.nii.gz 29-13-0800_labels.nii.gz -lstat > 29-13-0800_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/29-13-0800;sed -i "1,2d" 29-13-0800_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/29-13-0800;sed "s/\s\+/,/g" 29-13-0800_pre_ATROPOS_GMM_POSTERIORS3.txt > 29-13-0800_pre_ATROPOS_GMM_POSTERIORS3.csv cd $(WORKDIR)/29-13-0800;sed -i "s/^/29-13-0800_pre_ATROPOS_GMM_POSTERIORS3,/" 29-13-0800_pre_ATROPOS_GMM_POSTERIORS3.csv job_29-13-0800_wCSV_pre_ATROPOS_GMM_POSTERIORS4: cd $(WORKDIR)/29-13-0800;c3d 29-13-0800_pre_ATROPOS_GMM_POSTERIORS4.nii.gz 29-13-0800_labels.nii.gz -lstat > 29-13-0800_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/29-13-0800;sed -i "1,2d" 29-13-0800_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/29-13-0800;sed "s/\s\+/,/g" 29-13-0800_pre_ATROPOS_GMM_POSTERIORS4.txt > 29-13-0800_pre_ATROPOS_GMM_POSTERIORS4.csv cd $(WORKDIR)/29-13-0800;sed -i "s/^/29-13-0800_pre_ATROPOS_GMM_POSTERIORS4,/" 29-13-0800_pre_ATROPOS_GMM_POSTERIORS4.csv job_29-13-0800_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO: cd $(WORKDIR)/29-13-0800;c3d 29-13-0800_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.nii.gz 29-13-0800_labels.nii.gz -lstat > 29-13-0800_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/29-13-0800;sed -i "1,2d" 29-13-0800_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/29-13-0800;sed "s/\s\+/,/g" 29-13-0800_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt > 29-13-0800_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv cd $(WORKDIR)/29-13-0800;sed -i "s/^/29-13-0800_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO,/" 29-13-0800_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv job_29-13-0800_wCSV_pre_ENTROPY_RADIUS_1: cd $(WORKDIR)/29-13-0800;c3d 29-13-0800_pre_ENTROPY_RADIUS_1.nii.gz 29-13-0800_labels.nii.gz -lstat > 29-13-0800_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/29-13-0800;sed -i "1,2d" 29-13-0800_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/29-13-0800;sed "s/\s\+/,/g" 29-13-0800_pre_ENTROPY_RADIUS_1.txt > 29-13-0800_pre_ENTROPY_RADIUS_1.csv cd $(WORKDIR)/29-13-0800;sed -i "s/^/29-13-0800_pre_ENTROPY_RADIUS_1,/" 29-13-0800_pre_ENTROPY_RADIUS_1.csv job_29-13-0800_wCSV_pre_ENTROPY_RADIUS_3: cd $(WORKDIR)/29-13-0800;c3d 29-13-0800_pre_ENTROPY_RADIUS_3.nii.gz 29-13-0800_labels.nii.gz -lstat > 29-13-0800_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/29-13-0800;sed -i "1,2d" 29-13-0800_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/29-13-0800;sed "s/\s\+/,/g" 29-13-0800_pre_ENTROPY_RADIUS_3.txt > 29-13-0800_pre_ENTROPY_RADIUS_3.csv cd $(WORKDIR)/29-13-0800;sed -i "s/^/29-13-0800_pre_ENTROPY_RADIUS_3,/" 29-13-0800_pre_ENTROPY_RADIUS_3.csv job_29-13-0800_wCSV_pre_MEAN_RADIUS_1: cd $(WORKDIR)/29-13-0800;c3d 29-13-0800_pre_MEAN_RADIUS_1.nii.gz 29-13-0800_labels.nii.gz -lstat > 29-13-0800_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/29-13-0800;sed -i "1,2d" 29-13-0800_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/29-13-0800;sed "s/\s\+/,/g" 29-13-0800_pre_MEAN_RADIUS_1.txt > 29-13-0800_pre_MEAN_RADIUS_1.csv cd $(WORKDIR)/29-13-0800;sed -i "s/^/29-13-0800_pre_MEAN_RADIUS_1,/" 29-13-0800_pre_MEAN_RADIUS_1.csv job_29-13-0800_wCSV_pre_MEAN_RADIUS_3: cd $(WORKDIR)/29-13-0800;c3d 29-13-0800_pre_MEAN_RADIUS_3.nii.gz 29-13-0800_labels.nii.gz -lstat > 29-13-0800_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/29-13-0800;sed -i "1,2d" 29-13-0800_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/29-13-0800;sed "s/\s\+/,/g" 29-13-0800_pre_MEAN_RADIUS_3.txt > 29-13-0800_pre_MEAN_RADIUS_3.csv cd $(WORKDIR)/29-13-0800;sed -i "s/^/29-13-0800_pre_MEAN_RADIUS_3,/" 29-13-0800_pre_MEAN_RADIUS_3.csv job_29-13-0800_wCSV_pre_NORMALIZED: cd $(WORKDIR)/29-13-0800;c3d 29-13-0800_pre_NORMALIZED.nii.gz 29-13-0800_labels.nii.gz -lstat > 29-13-0800_pre_NORMALIZED.txt cd $(WORKDIR)/29-13-0800;sed -i "1,2d" 29-13-0800_pre_NORMALIZED.txt cd $(WORKDIR)/29-13-0800;sed "s/\s\+/,/g" 29-13-0800_pre_NORMALIZED.txt > 29-13-0800_pre_NORMALIZED.csv cd $(WORKDIR)/29-13-0800;sed -i "s/^/29-13-0800_pre_NORMALIZED,/" 29-13-0800_pre_NORMALIZED.csv job_29-13-0800_wCSV_pre_SIGMA_RADIUS_1: cd $(WORKDIR)/29-13-0800;c3d 29-13-0800_pre_SIGMA_RADIUS_1.nii.gz 29-13-0800_labels.nii.gz -lstat > 29-13-0800_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/29-13-0800;sed -i "1,2d" 29-13-0800_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/29-13-0800;sed "s/\s\+/,/g" 29-13-0800_pre_SIGMA_RADIUS_1.txt > 29-13-0800_pre_SIGMA_RADIUS_1.csv cd $(WORKDIR)/29-13-0800;sed -i "s/^/29-13-0800_pre_SIGMA_RADIUS_1,/" 29-13-0800_pre_SIGMA_RADIUS_1.csv job_29-13-0800_wCSV_pre_SIGMA_RADIUS_3: cd $(WORKDIR)/29-13-0800;c3d 29-13-0800_pre_SIGMA_RADIUS_3.nii.gz 29-13-0800_labels.nii.gz -lstat > 29-13-0800_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/29-13-0800;sed -i "1,2d" 29-13-0800_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/29-13-0800;sed "s/\s\+/,/g" 29-13-0800_pre_SIGMA_RADIUS_3.txt > 29-13-0800_pre_SIGMA_RADIUS_3.csv cd $(WORKDIR)/29-13-0800;sed -i "s/^/29-13-0800_pre_SIGMA_RADIUS_3,/" 29-13-0800_pre_SIGMA_RADIUS_3.csv job_29-13-0800_wCSV_pre_SKEWNESS_RADIUS_1: cd $(WORKDIR)/29-13-0800;c3d 29-13-0800_pre_SKEWNESS_RADIUS_1.nii.gz 29-13-0800_labels.nii.gz -lstat > 29-13-0800_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/29-13-0800;sed -i "1,2d" 29-13-0800_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/29-13-0800;sed "s/\s\+/,/g" 29-13-0800_pre_SKEWNESS_RADIUS_1.txt > 29-13-0800_pre_SKEWNESS_RADIUS_1.csv cd $(WORKDIR)/29-13-0800;sed -i "s/^/29-13-0800_pre_SKEWNESS_RADIUS_1,/" 29-13-0800_pre_SKEWNESS_RADIUS_1.csv job_29-13-0800_wCSV_pre_SKEWNESS_RADIUS_3: cd $(WORKDIR)/29-13-0800;c3d 29-13-0800_pre_SKEWNESS_RADIUS_3.nii.gz 29-13-0800_labels.nii.gz -lstat > 29-13-0800_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/29-13-0800;sed -i "1,2d" 29-13-0800_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/29-13-0800;sed "s/\s\+/,/g" 29-13-0800_pre_SKEWNESS_RADIUS_3.txt > 29-13-0800_pre_SKEWNESS_RADIUS_3.csv cd $(WORKDIR)/29-13-0800;sed -i "s/^/29-13-0800_pre_SKEWNESS_RADIUS_3,/" 29-13-0800_pre_SKEWNESS_RADIUS_3.csv job_29-13-0800_wCSV_pre__DIFFERENCE: cd $(WORKDIR)/29-13-0800;c3d 29-13-0800_pre__DIFFERENCE.nii.gz 29-13-0800_labels.nii.gz -lstat > 29-13-0800_pre__DIFFERENCE.txt cd $(WORKDIR)/29-13-0800;sed -i "1,2d" 29-13-0800_pre__DIFFERENCE.txt cd $(WORKDIR)/29-13-0800;sed "s/\s\+/,/g" 29-13-0800_pre__DIFFERENCE.txt > 29-13-0800_pre__DIFFERENCE.csv cd $(WORKDIR)/29-13-0800;sed -i "s/^/29-13-0800_pre__DIFFERENCE,/" 29-13-0800_pre__DIFFERENCE.csv job_30-13-0802_crFI: cd $(WORKDIR)/30-13-0802;c3d 30-13-0802_grey.nii.gz 30-13-0802_labels.nii.gz -copy-transform -o 30-13-0802_labels.nii.gz cd $(WORKDIR)/30-13-0802;c3d 30-13-0802_grey.nii.gz -orient RAI -o 30-13-0802_grey.nii.gz cd $(WORKDIR)/30-13-0802;c3d 30-13-0802_labels.nii.gz -orient RAI -o 30-13-0802_labels.nii.gz cd $(WORKDIR)/30-13-0802;c3d 30-13-0802_labels.nii.gz -binarize -o 30-13-0802_mask.nii.gz cd $(WORKDIR)/30-13-0802;../createFeatureImagesOvary.sh -d 3 -x 30-13-0802_mask.nii.gz -l3 -n pre -a 30-13-0802_grey.nii.gz -f 0x2 -o ./30-13-0802_ -r 1 -r 3 -s 2 -b 4 job_30-13-0802_wCSV_NORMALIZED_DISTANCE: cd $(WORKDIR)/30-13-0802;c3d 30-13-0802_NORMALIZED_DISTANCE.nii.gz 30-13-0802_labels.nii.gz -lstat > 30-13-0802_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/30-13-0802;sed -i "1,2d" 30-13-0802_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/30-13-0802;sed "s/\s\+/,/g" 30-13-0802_NORMALIZED_DISTANCE.txt > 30-13-0802_NORMALIZED_DISTANCE.csv cd $(WORKDIR)/30-13-0802;sed -i "s/^/30-13-0802_NORMALIZED_DISTANCE,/" 30-13-0802_NORMALIZED_DISTANCE.csv job_30-13-0802_wCSV_pre_ATROPOS_GMM: cd $(WORKDIR)/30-13-0802;c3d 30-13-0802_pre_ATROPOS_GMM.nii.gz 30-13-0802_labels.nii.gz -lstat > 30-13-0802_pre_ATROPOS_GMM.txt cd $(WORKDIR)/30-13-0802;sed -i "1,2d" 30-13-0802_pre_ATROPOS_GMM.txt cd $(WORKDIR)/30-13-0802;sed "s/\s\+/,/g" 30-13-0802_pre_ATROPOS_GMM.txt > 30-13-0802_pre_ATROPOS_GMM.csv cd $(WORKDIR)/30-13-0802;sed -i "s/^/30-13-0802_pre_ATROPOS_GMM,/" 30-13-0802_pre_ATROPOS_GMM.csv job_30-13-0802_wCSV_pre_ATROPOS_GMM_ECCENTRICITY: cd $(WORKDIR)/30-13-0802;c3d 30-13-0802_pre_ATROPOS_GMM_ECCENTRICITY.nii.gz 30-13-0802_labels.nii.gz -lstat > 30-13-0802_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/30-13-0802;sed -i "1,2d" 30-13-0802_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/30-13-0802;sed "s/\s\+/,/g" 30-13-0802_pre_ATROPOS_GMM_ECCENTRICITY.txt > 30-13-0802_pre_ATROPOS_GMM_ECCENTRICITY.csv cd $(WORKDIR)/30-13-0802;sed -i "s/^/30-13-0802_pre_ATROPOS_GMM_ECCENTRICITY,/" 30-13-0802_pre_ATROPOS_GMM_ECCENTRICITY.csv job_30-13-0802_wCSV_pre_ATROPOS_GMM_ELONGATION: cd $(WORKDIR)/30-13-0802;c3d 30-13-0802_pre_ATROPOS_GMM_ELONGATION.nii.gz 30-13-0802_labels.nii.gz -lstat > 30-13-0802_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/30-13-0802;sed -i "1,2d" 30-13-0802_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/30-13-0802;sed "s/\s\+/,/g" 30-13-0802_pre_ATROPOS_GMM_ELONGATION.txt > 30-13-0802_pre_ATROPOS_GMM_ELONGATION.csv cd $(WORKDIR)/30-13-0802;sed -i "s/^/30-13-0802_pre_ATROPOS_GMM_ELONGATION,/" 30-13-0802_pre_ATROPOS_GMM_ELONGATION.csv job_30-13-0802_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE: cd $(WORKDIR)/30-13-0802;c3d 30-13-0802_pre_ATROPOS_GMM_LABEL3_DISTANCE.nii.gz 30-13-0802_labels.nii.gz -lstat > 30-13-0802_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/30-13-0802;sed -i "1,2d" 30-13-0802_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/30-13-0802;sed "s/\s\+/,/g" 30-13-0802_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt > 30-13-0802_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv cd $(WORKDIR)/30-13-0802;sed -i "s/^/30-13-0802_pre_ATROPOS_GMM_LABEL3_DISTANCE,/" 30-13-0802_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv job_30-13-0802_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME: cd $(WORKDIR)/30-13-0802;c3d 30-13-0802_pre_ATROPOS_GMM_PHYSICAL_VOLUME.nii.gz 30-13-0802_labels.nii.gz -lstat > 30-13-0802_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/30-13-0802;sed -i "1,2d" 30-13-0802_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/30-13-0802;sed "s/\s\+/,/g" 30-13-0802_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt > 30-13-0802_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv cd $(WORKDIR)/30-13-0802;sed -i "s/^/30-13-0802_pre_ATROPOS_GMM_PHYSICAL_VOLUME,/" 30-13-0802_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv job_30-13-0802_wCSV_pre_ATROPOS_GMM_POSTERIORS1: cd $(WORKDIR)/30-13-0802;c3d 30-13-0802_pre_ATROPOS_GMM_POSTERIORS1.nii.gz 30-13-0802_labels.nii.gz -lstat > 30-13-0802_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/30-13-0802;sed -i "1,2d" 30-13-0802_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/30-13-0802;sed "s/\s\+/,/g" 30-13-0802_pre_ATROPOS_GMM_POSTERIORS1.txt > 30-13-0802_pre_ATROPOS_GMM_POSTERIORS1.csv cd $(WORKDIR)/30-13-0802;sed -i "s/^/30-13-0802_pre_ATROPOS_GMM_POSTERIORS1,/" 30-13-0802_pre_ATROPOS_GMM_POSTERIORS1.csv job_30-13-0802_wCSV_pre_ATROPOS_GMM_POSTERIORS2: cd $(WORKDIR)/30-13-0802;c3d 30-13-0802_pre_ATROPOS_GMM_POSTERIORS2.nii.gz 30-13-0802_labels.nii.gz -lstat > 30-13-0802_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/30-13-0802;sed -i "1,2d" 30-13-0802_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/30-13-0802;sed "s/\s\+/,/g" 30-13-0802_pre_ATROPOS_GMM_POSTERIORS2.txt > 30-13-0802_pre_ATROPOS_GMM_POSTERIORS2.csv cd $(WORKDIR)/30-13-0802;sed -i "s/^/30-13-0802_pre_ATROPOS_GMM_POSTERIORS2,/" 30-13-0802_pre_ATROPOS_GMM_POSTERIORS2.csv job_30-13-0802_wCSV_pre_ATROPOS_GMM_POSTERIORS3: cd $(WORKDIR)/30-13-0802;c3d 30-13-0802_pre_ATROPOS_GMM_POSTERIORS3.nii.gz 30-13-0802_labels.nii.gz -lstat > 30-13-0802_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/30-13-0802;sed -i "1,2d" 30-13-0802_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/30-13-0802;sed "s/\s\+/,/g" 30-13-0802_pre_ATROPOS_GMM_POSTERIORS3.txt > 30-13-0802_pre_ATROPOS_GMM_POSTERIORS3.csv cd $(WORKDIR)/30-13-0802;sed -i "s/^/30-13-0802_pre_ATROPOS_GMM_POSTERIORS3,/" 30-13-0802_pre_ATROPOS_GMM_POSTERIORS3.csv job_30-13-0802_wCSV_pre_ATROPOS_GMM_POSTERIORS4: cd $(WORKDIR)/30-13-0802;c3d 30-13-0802_pre_ATROPOS_GMM_POSTERIORS4.nii.gz 30-13-0802_labels.nii.gz -lstat > 30-13-0802_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/30-13-0802;sed -i "1,2d" 30-13-0802_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/30-13-0802;sed "s/\s\+/,/g" 30-13-0802_pre_ATROPOS_GMM_POSTERIORS4.txt > 30-13-0802_pre_ATROPOS_GMM_POSTERIORS4.csv cd $(WORKDIR)/30-13-0802;sed -i "s/^/30-13-0802_pre_ATROPOS_GMM_POSTERIORS4,/" 30-13-0802_pre_ATROPOS_GMM_POSTERIORS4.csv job_30-13-0802_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO: cd $(WORKDIR)/30-13-0802;c3d 30-13-0802_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.nii.gz 30-13-0802_labels.nii.gz -lstat > 30-13-0802_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/30-13-0802;sed -i "1,2d" 30-13-0802_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/30-13-0802;sed "s/\s\+/,/g" 30-13-0802_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt > 30-13-0802_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv cd $(WORKDIR)/30-13-0802;sed -i "s/^/30-13-0802_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO,/" 30-13-0802_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv job_30-13-0802_wCSV_pre_ENTROPY_RADIUS_1: cd $(WORKDIR)/30-13-0802;c3d 30-13-0802_pre_ENTROPY_RADIUS_1.nii.gz 30-13-0802_labels.nii.gz -lstat > 30-13-0802_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/30-13-0802;sed -i "1,2d" 30-13-0802_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/30-13-0802;sed "s/\s\+/,/g" 30-13-0802_pre_ENTROPY_RADIUS_1.txt > 30-13-0802_pre_ENTROPY_RADIUS_1.csv cd $(WORKDIR)/30-13-0802;sed -i "s/^/30-13-0802_pre_ENTROPY_RADIUS_1,/" 30-13-0802_pre_ENTROPY_RADIUS_1.csv job_30-13-0802_wCSV_pre_ENTROPY_RADIUS_3: cd $(WORKDIR)/30-13-0802;c3d 30-13-0802_pre_ENTROPY_RADIUS_3.nii.gz 30-13-0802_labels.nii.gz -lstat > 30-13-0802_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/30-13-0802;sed -i "1,2d" 30-13-0802_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/30-13-0802;sed "s/\s\+/,/g" 30-13-0802_pre_ENTROPY_RADIUS_3.txt > 30-13-0802_pre_ENTROPY_RADIUS_3.csv cd $(WORKDIR)/30-13-0802;sed -i "s/^/30-13-0802_pre_ENTROPY_RADIUS_3,/" 30-13-0802_pre_ENTROPY_RADIUS_3.csv job_30-13-0802_wCSV_pre_MEAN_RADIUS_1: cd $(WORKDIR)/30-13-0802;c3d 30-13-0802_pre_MEAN_RADIUS_1.nii.gz 30-13-0802_labels.nii.gz -lstat > 30-13-0802_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/30-13-0802;sed -i "1,2d" 30-13-0802_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/30-13-0802;sed "s/\s\+/,/g" 30-13-0802_pre_MEAN_RADIUS_1.txt > 30-13-0802_pre_MEAN_RADIUS_1.csv cd $(WORKDIR)/30-13-0802;sed -i "s/^/30-13-0802_pre_MEAN_RADIUS_1,/" 30-13-0802_pre_MEAN_RADIUS_1.csv job_30-13-0802_wCSV_pre_MEAN_RADIUS_3: cd $(WORKDIR)/30-13-0802;c3d 30-13-0802_pre_MEAN_RADIUS_3.nii.gz 30-13-0802_labels.nii.gz -lstat > 30-13-0802_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/30-13-0802;sed -i "1,2d" 30-13-0802_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/30-13-0802;sed "s/\s\+/,/g" 30-13-0802_pre_MEAN_RADIUS_3.txt > 30-13-0802_pre_MEAN_RADIUS_3.csv cd $(WORKDIR)/30-13-0802;sed -i "s/^/30-13-0802_pre_MEAN_RADIUS_3,/" 30-13-0802_pre_MEAN_RADIUS_3.csv job_30-13-0802_wCSV_pre_NORMALIZED: cd $(WORKDIR)/30-13-0802;c3d 30-13-0802_pre_NORMALIZED.nii.gz 30-13-0802_labels.nii.gz -lstat > 30-13-0802_pre_NORMALIZED.txt cd $(WORKDIR)/30-13-0802;sed -i "1,2d" 30-13-0802_pre_NORMALIZED.txt cd $(WORKDIR)/30-13-0802;sed "s/\s\+/,/g" 30-13-0802_pre_NORMALIZED.txt > 30-13-0802_pre_NORMALIZED.csv cd $(WORKDIR)/30-13-0802;sed -i "s/^/30-13-0802_pre_NORMALIZED,/" 30-13-0802_pre_NORMALIZED.csv job_30-13-0802_wCSV_pre_SIGMA_RADIUS_1: cd $(WORKDIR)/30-13-0802;c3d 30-13-0802_pre_SIGMA_RADIUS_1.nii.gz 30-13-0802_labels.nii.gz -lstat > 30-13-0802_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/30-13-0802;sed -i "1,2d" 30-13-0802_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/30-13-0802;sed "s/\s\+/,/g" 30-13-0802_pre_SIGMA_RADIUS_1.txt > 30-13-0802_pre_SIGMA_RADIUS_1.csv cd $(WORKDIR)/30-13-0802;sed -i "s/^/30-13-0802_pre_SIGMA_RADIUS_1,/" 30-13-0802_pre_SIGMA_RADIUS_1.csv job_30-13-0802_wCSV_pre_SIGMA_RADIUS_3: cd $(WORKDIR)/30-13-0802;c3d 30-13-0802_pre_SIGMA_RADIUS_3.nii.gz 30-13-0802_labels.nii.gz -lstat > 30-13-0802_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/30-13-0802;sed -i "1,2d" 30-13-0802_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/30-13-0802;sed "s/\s\+/,/g" 30-13-0802_pre_SIGMA_RADIUS_3.txt > 30-13-0802_pre_SIGMA_RADIUS_3.csv cd $(WORKDIR)/30-13-0802;sed -i "s/^/30-13-0802_pre_SIGMA_RADIUS_3,/" 30-13-0802_pre_SIGMA_RADIUS_3.csv job_30-13-0802_wCSV_pre_SKEWNESS_RADIUS_1: cd $(WORKDIR)/30-13-0802;c3d 30-13-0802_pre_SKEWNESS_RADIUS_1.nii.gz 30-13-0802_labels.nii.gz -lstat > 30-13-0802_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/30-13-0802;sed -i "1,2d" 30-13-0802_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/30-13-0802;sed "s/\s\+/,/g" 30-13-0802_pre_SKEWNESS_RADIUS_1.txt > 30-13-0802_pre_SKEWNESS_RADIUS_1.csv cd $(WORKDIR)/30-13-0802;sed -i "s/^/30-13-0802_pre_SKEWNESS_RADIUS_1,/" 30-13-0802_pre_SKEWNESS_RADIUS_1.csv job_30-13-0802_wCSV_pre_SKEWNESS_RADIUS_3: cd $(WORKDIR)/30-13-0802;c3d 30-13-0802_pre_SKEWNESS_RADIUS_3.nii.gz 30-13-0802_labels.nii.gz -lstat > 30-13-0802_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/30-13-0802;sed -i "1,2d" 30-13-0802_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/30-13-0802;sed "s/\s\+/,/g" 30-13-0802_pre_SKEWNESS_RADIUS_3.txt > 30-13-0802_pre_SKEWNESS_RADIUS_3.csv cd $(WORKDIR)/30-13-0802;sed -i "s/^/30-13-0802_pre_SKEWNESS_RADIUS_3,/" 30-13-0802_pre_SKEWNESS_RADIUS_3.csv job_30-13-0802_wCSV_pre__DIFFERENCE: cd $(WORKDIR)/30-13-0802;c3d 30-13-0802_pre__DIFFERENCE.nii.gz 30-13-0802_labels.nii.gz -lstat > 30-13-0802_pre__DIFFERENCE.txt cd $(WORKDIR)/30-13-0802;sed -i "1,2d" 30-13-0802_pre__DIFFERENCE.txt cd $(WORKDIR)/30-13-0802;sed "s/\s\+/,/g" 30-13-0802_pre__DIFFERENCE.txt > 30-13-0802_pre__DIFFERENCE.csv cd $(WORKDIR)/30-13-0802;sed -i "s/^/30-13-0802_pre__DIFFERENCE,/" 30-13-0802_pre__DIFFERENCE.csv job_31-13-0807_crFI: cd $(WORKDIR)/31-13-0807;c3d 31-13-0807_grey.nii.gz 31-13-0807_labels.nii.gz -copy-transform -o 31-13-0807_labels.nii.gz cd $(WORKDIR)/31-13-0807;c3d 31-13-0807_grey.nii.gz -orient RAI -o 31-13-0807_grey.nii.gz cd $(WORKDIR)/31-13-0807;c3d 31-13-0807_labels.nii.gz -orient RAI -o 31-13-0807_labels.nii.gz cd $(WORKDIR)/31-13-0807;c3d 31-13-0807_labels.nii.gz -binarize -o 31-13-0807_mask.nii.gz cd $(WORKDIR)/31-13-0807;../createFeatureImagesOvary.sh -d 3 -x 31-13-0807_mask.nii.gz -l3 -n pre -a 31-13-0807_grey.nii.gz -f 0x2 -o ./31-13-0807_ -r 1 -r 3 -s 2 -b 4 job_31-13-0807_wCSV_NORMALIZED_DISTANCE: cd $(WORKDIR)/31-13-0807;c3d 31-13-0807_NORMALIZED_DISTANCE.nii.gz 31-13-0807_labels.nii.gz -lstat > 31-13-0807_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/31-13-0807;sed -i "1,2d" 31-13-0807_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/31-13-0807;sed "s/\s\+/,/g" 31-13-0807_NORMALIZED_DISTANCE.txt > 31-13-0807_NORMALIZED_DISTANCE.csv cd $(WORKDIR)/31-13-0807;sed -i "s/^/31-13-0807_NORMALIZED_DISTANCE,/" 31-13-0807_NORMALIZED_DISTANCE.csv job_31-13-0807_wCSV_pre_ATROPOS_GMM: cd $(WORKDIR)/31-13-0807;c3d 31-13-0807_pre_ATROPOS_GMM.nii.gz 31-13-0807_labels.nii.gz -lstat > 31-13-0807_pre_ATROPOS_GMM.txt cd $(WORKDIR)/31-13-0807;sed -i "1,2d" 31-13-0807_pre_ATROPOS_GMM.txt cd $(WORKDIR)/31-13-0807;sed "s/\s\+/,/g" 31-13-0807_pre_ATROPOS_GMM.txt > 31-13-0807_pre_ATROPOS_GMM.csv cd $(WORKDIR)/31-13-0807;sed -i "s/^/31-13-0807_pre_ATROPOS_GMM,/" 31-13-0807_pre_ATROPOS_GMM.csv job_31-13-0807_wCSV_pre_ATROPOS_GMM_ECCENTRICITY: cd $(WORKDIR)/31-13-0807;c3d 31-13-0807_pre_ATROPOS_GMM_ECCENTRICITY.nii.gz 31-13-0807_labels.nii.gz -lstat > 31-13-0807_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/31-13-0807;sed -i "1,2d" 31-13-0807_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/31-13-0807;sed "s/\s\+/,/g" 31-13-0807_pre_ATROPOS_GMM_ECCENTRICITY.txt > 31-13-0807_pre_ATROPOS_GMM_ECCENTRICITY.csv cd $(WORKDIR)/31-13-0807;sed -i "s/^/31-13-0807_pre_ATROPOS_GMM_ECCENTRICITY,/" 31-13-0807_pre_ATROPOS_GMM_ECCENTRICITY.csv job_31-13-0807_wCSV_pre_ATROPOS_GMM_ELONGATION: cd $(WORKDIR)/31-13-0807;c3d 31-13-0807_pre_ATROPOS_GMM_ELONGATION.nii.gz 31-13-0807_labels.nii.gz -lstat > 31-13-0807_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/31-13-0807;sed -i "1,2d" 31-13-0807_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/31-13-0807;sed "s/\s\+/,/g" 31-13-0807_pre_ATROPOS_GMM_ELONGATION.txt > 31-13-0807_pre_ATROPOS_GMM_ELONGATION.csv cd $(WORKDIR)/31-13-0807;sed -i "s/^/31-13-0807_pre_ATROPOS_GMM_ELONGATION,/" 31-13-0807_pre_ATROPOS_GMM_ELONGATION.csv job_31-13-0807_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE: cd $(WORKDIR)/31-13-0807;c3d 31-13-0807_pre_ATROPOS_GMM_LABEL3_DISTANCE.nii.gz 31-13-0807_labels.nii.gz -lstat > 31-13-0807_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/31-13-0807;sed -i "1,2d" 31-13-0807_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/31-13-0807;sed "s/\s\+/,/g" 31-13-0807_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt > 31-13-0807_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv cd $(WORKDIR)/31-13-0807;sed -i "s/^/31-13-0807_pre_ATROPOS_GMM_LABEL3_DISTANCE,/" 31-13-0807_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv job_31-13-0807_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME: cd $(WORKDIR)/31-13-0807;c3d 31-13-0807_pre_ATROPOS_GMM_PHYSICAL_VOLUME.nii.gz 31-13-0807_labels.nii.gz -lstat > 31-13-0807_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/31-13-0807;sed -i "1,2d" 31-13-0807_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/31-13-0807;sed "s/\s\+/,/g" 31-13-0807_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt > 31-13-0807_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv cd $(WORKDIR)/31-13-0807;sed -i "s/^/31-13-0807_pre_ATROPOS_GMM_PHYSICAL_VOLUME,/" 31-13-0807_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv job_31-13-0807_wCSV_pre_ATROPOS_GMM_POSTERIORS1: cd $(WORKDIR)/31-13-0807;c3d 31-13-0807_pre_ATROPOS_GMM_POSTERIORS1.nii.gz 31-13-0807_labels.nii.gz -lstat > 31-13-0807_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/31-13-0807;sed -i "1,2d" 31-13-0807_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/31-13-0807;sed "s/\s\+/,/g" 31-13-0807_pre_ATROPOS_GMM_POSTERIORS1.txt > 31-13-0807_pre_ATROPOS_GMM_POSTERIORS1.csv cd $(WORKDIR)/31-13-0807;sed -i "s/^/31-13-0807_pre_ATROPOS_GMM_POSTERIORS1,/" 31-13-0807_pre_ATROPOS_GMM_POSTERIORS1.csv job_31-13-0807_wCSV_pre_ATROPOS_GMM_POSTERIORS2: cd $(WORKDIR)/31-13-0807;c3d 31-13-0807_pre_ATROPOS_GMM_POSTERIORS2.nii.gz 31-13-0807_labels.nii.gz -lstat > 31-13-0807_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/31-13-0807;sed -i "1,2d" 31-13-0807_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/31-13-0807;sed "s/\s\+/,/g" 31-13-0807_pre_ATROPOS_GMM_POSTERIORS2.txt > 31-13-0807_pre_ATROPOS_GMM_POSTERIORS2.csv cd $(WORKDIR)/31-13-0807;sed -i "s/^/31-13-0807_pre_ATROPOS_GMM_POSTERIORS2,/" 31-13-0807_pre_ATROPOS_GMM_POSTERIORS2.csv job_31-13-0807_wCSV_pre_ATROPOS_GMM_POSTERIORS3: cd $(WORKDIR)/31-13-0807;c3d 31-13-0807_pre_ATROPOS_GMM_POSTERIORS3.nii.gz 31-13-0807_labels.nii.gz -lstat > 31-13-0807_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/31-13-0807;sed -i "1,2d" 31-13-0807_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/31-13-0807;sed "s/\s\+/,/g" 31-13-0807_pre_ATROPOS_GMM_POSTERIORS3.txt > 31-13-0807_pre_ATROPOS_GMM_POSTERIORS3.csv cd $(WORKDIR)/31-13-0807;sed -i "s/^/31-13-0807_pre_ATROPOS_GMM_POSTERIORS3,/" 31-13-0807_pre_ATROPOS_GMM_POSTERIORS3.csv job_31-13-0807_wCSV_pre_ATROPOS_GMM_POSTERIORS4: cd $(WORKDIR)/31-13-0807;c3d 31-13-0807_pre_ATROPOS_GMM_POSTERIORS4.nii.gz 31-13-0807_labels.nii.gz -lstat > 31-13-0807_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/31-13-0807;sed -i "1,2d" 31-13-0807_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/31-13-0807;sed "s/\s\+/,/g" 31-13-0807_pre_ATROPOS_GMM_POSTERIORS4.txt > 31-13-0807_pre_ATROPOS_GMM_POSTERIORS4.csv cd $(WORKDIR)/31-13-0807;sed -i "s/^/31-13-0807_pre_ATROPOS_GMM_POSTERIORS4,/" 31-13-0807_pre_ATROPOS_GMM_POSTERIORS4.csv job_31-13-0807_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO: cd $(WORKDIR)/31-13-0807;c3d 31-13-0807_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.nii.gz 31-13-0807_labels.nii.gz -lstat > 31-13-0807_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/31-13-0807;sed -i "1,2d" 31-13-0807_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/31-13-0807;sed "s/\s\+/,/g" 31-13-0807_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt > 31-13-0807_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv cd $(WORKDIR)/31-13-0807;sed -i "s/^/31-13-0807_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO,/" 31-13-0807_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv job_31-13-0807_wCSV_pre_ENTROPY_RADIUS_1: cd $(WORKDIR)/31-13-0807;c3d 31-13-0807_pre_ENTROPY_RADIUS_1.nii.gz 31-13-0807_labels.nii.gz -lstat > 31-13-0807_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/31-13-0807;sed -i "1,2d" 31-13-0807_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/31-13-0807;sed "s/\s\+/,/g" 31-13-0807_pre_ENTROPY_RADIUS_1.txt > 31-13-0807_pre_ENTROPY_RADIUS_1.csv cd $(WORKDIR)/31-13-0807;sed -i "s/^/31-13-0807_pre_ENTROPY_RADIUS_1,/" 31-13-0807_pre_ENTROPY_RADIUS_1.csv job_31-13-0807_wCSV_pre_ENTROPY_RADIUS_3: cd $(WORKDIR)/31-13-0807;c3d 31-13-0807_pre_ENTROPY_RADIUS_3.nii.gz 31-13-0807_labels.nii.gz -lstat > 31-13-0807_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/31-13-0807;sed -i "1,2d" 31-13-0807_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/31-13-0807;sed "s/\s\+/,/g" 31-13-0807_pre_ENTROPY_RADIUS_3.txt > 31-13-0807_pre_ENTROPY_RADIUS_3.csv cd $(WORKDIR)/31-13-0807;sed -i "s/^/31-13-0807_pre_ENTROPY_RADIUS_3,/" 31-13-0807_pre_ENTROPY_RADIUS_3.csv job_31-13-0807_wCSV_pre_MEAN_RADIUS_1: cd $(WORKDIR)/31-13-0807;c3d 31-13-0807_pre_MEAN_RADIUS_1.nii.gz 31-13-0807_labels.nii.gz -lstat > 31-13-0807_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/31-13-0807;sed -i "1,2d" 31-13-0807_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/31-13-0807;sed "s/\s\+/,/g" 31-13-0807_pre_MEAN_RADIUS_1.txt > 31-13-0807_pre_MEAN_RADIUS_1.csv cd $(WORKDIR)/31-13-0807;sed -i "s/^/31-13-0807_pre_MEAN_RADIUS_1,/" 31-13-0807_pre_MEAN_RADIUS_1.csv job_31-13-0807_wCSV_pre_MEAN_RADIUS_3: cd $(WORKDIR)/31-13-0807;c3d 31-13-0807_pre_MEAN_RADIUS_3.nii.gz 31-13-0807_labels.nii.gz -lstat > 31-13-0807_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/31-13-0807;sed -i "1,2d" 31-13-0807_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/31-13-0807;sed "s/\s\+/,/g" 31-13-0807_pre_MEAN_RADIUS_3.txt > 31-13-0807_pre_MEAN_RADIUS_3.csv cd $(WORKDIR)/31-13-0807;sed -i "s/^/31-13-0807_pre_MEAN_RADIUS_3,/" 31-13-0807_pre_MEAN_RADIUS_3.csv job_31-13-0807_wCSV_pre_NORMALIZED: cd $(WORKDIR)/31-13-0807;c3d 31-13-0807_pre_NORMALIZED.nii.gz 31-13-0807_labels.nii.gz -lstat > 31-13-0807_pre_NORMALIZED.txt cd $(WORKDIR)/31-13-0807;sed -i "1,2d" 31-13-0807_pre_NORMALIZED.txt cd $(WORKDIR)/31-13-0807;sed "s/\s\+/,/g" 31-13-0807_pre_NORMALIZED.txt > 31-13-0807_pre_NORMALIZED.csv cd $(WORKDIR)/31-13-0807;sed -i "s/^/31-13-0807_pre_NORMALIZED,/" 31-13-0807_pre_NORMALIZED.csv job_31-13-0807_wCSV_pre_SIGMA_RADIUS_1: cd $(WORKDIR)/31-13-0807;c3d 31-13-0807_pre_SIGMA_RADIUS_1.nii.gz 31-13-0807_labels.nii.gz -lstat > 31-13-0807_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/31-13-0807;sed -i "1,2d" 31-13-0807_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/31-13-0807;sed "s/\s\+/,/g" 31-13-0807_pre_SIGMA_RADIUS_1.txt > 31-13-0807_pre_SIGMA_RADIUS_1.csv cd $(WORKDIR)/31-13-0807;sed -i "s/^/31-13-0807_pre_SIGMA_RADIUS_1,/" 31-13-0807_pre_SIGMA_RADIUS_1.csv job_31-13-0807_wCSV_pre_SIGMA_RADIUS_3: cd $(WORKDIR)/31-13-0807;c3d 31-13-0807_pre_SIGMA_RADIUS_3.nii.gz 31-13-0807_labels.nii.gz -lstat > 31-13-0807_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/31-13-0807;sed -i "1,2d" 31-13-0807_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/31-13-0807;sed "s/\s\+/,/g" 31-13-0807_pre_SIGMA_RADIUS_3.txt > 31-13-0807_pre_SIGMA_RADIUS_3.csv cd $(WORKDIR)/31-13-0807;sed -i "s/^/31-13-0807_pre_SIGMA_RADIUS_3,/" 31-13-0807_pre_SIGMA_RADIUS_3.csv job_31-13-0807_wCSV_pre_SKEWNESS_RADIUS_1: cd $(WORKDIR)/31-13-0807;c3d 31-13-0807_pre_SKEWNESS_RADIUS_1.nii.gz 31-13-0807_labels.nii.gz -lstat > 31-13-0807_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/31-13-0807;sed -i "1,2d" 31-13-0807_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/31-13-0807;sed "s/\s\+/,/g" 31-13-0807_pre_SKEWNESS_RADIUS_1.txt > 31-13-0807_pre_SKEWNESS_RADIUS_1.csv cd $(WORKDIR)/31-13-0807;sed -i "s/^/31-13-0807_pre_SKEWNESS_RADIUS_1,/" 31-13-0807_pre_SKEWNESS_RADIUS_1.csv job_31-13-0807_wCSV_pre_SKEWNESS_RADIUS_3: cd $(WORKDIR)/31-13-0807;c3d 31-13-0807_pre_SKEWNESS_RADIUS_3.nii.gz 31-13-0807_labels.nii.gz -lstat > 31-13-0807_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/31-13-0807;sed -i "1,2d" 31-13-0807_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/31-13-0807;sed "s/\s\+/,/g" 31-13-0807_pre_SKEWNESS_RADIUS_3.txt > 31-13-0807_pre_SKEWNESS_RADIUS_3.csv cd $(WORKDIR)/31-13-0807;sed -i "s/^/31-13-0807_pre_SKEWNESS_RADIUS_3,/" 31-13-0807_pre_SKEWNESS_RADIUS_3.csv job_31-13-0807_wCSV_pre__DIFFERENCE: cd $(WORKDIR)/31-13-0807;c3d 31-13-0807_pre__DIFFERENCE.nii.gz 31-13-0807_labels.nii.gz -lstat > 31-13-0807_pre__DIFFERENCE.txt cd $(WORKDIR)/31-13-0807;sed -i "1,2d" 31-13-0807_pre__DIFFERENCE.txt cd $(WORKDIR)/31-13-0807;sed "s/\s\+/,/g" 31-13-0807_pre__DIFFERENCE.txt > 31-13-0807_pre__DIFFERENCE.csv cd $(WORKDIR)/31-13-0807;sed -i "s/^/31-13-0807_pre__DIFFERENCE,/" 31-13-0807_pre__DIFFERENCE.csv job_32-13-0883_crFI: cd $(WORKDIR)/32-13-0883;c3d 32-13-0883_grey.nii.gz 32-13-0883_labels.nii.gz -copy-transform -o 32-13-0883_labels.nii.gz cd $(WORKDIR)/32-13-0883;c3d 32-13-0883_grey.nii.gz -orient RAI -o 32-13-0883_grey.nii.gz cd $(WORKDIR)/32-13-0883;c3d 32-13-0883_labels.nii.gz -orient RAI -o 32-13-0883_labels.nii.gz cd $(WORKDIR)/32-13-0883;c3d 32-13-0883_labels.nii.gz -binarize -o 32-13-0883_mask.nii.gz cd $(WORKDIR)/32-13-0883;../createFeatureImagesOvary.sh -d 3 -x 32-13-0883_mask.nii.gz -l3 -n pre -a 32-13-0883_grey.nii.gz -f 0x2 -o ./32-13-0883_ -r 1 -r 3 -s 2 -b 4 job_32-13-0883_wCSV_NORMALIZED_DISTANCE: cd $(WORKDIR)/32-13-0883;c3d 32-13-0883_NORMALIZED_DISTANCE.nii.gz 32-13-0883_labels.nii.gz -lstat > 32-13-0883_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/32-13-0883;sed -i "1,2d" 32-13-0883_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/32-13-0883;sed "s/\s\+/,/g" 32-13-0883_NORMALIZED_DISTANCE.txt > 32-13-0883_NORMALIZED_DISTANCE.csv cd $(WORKDIR)/32-13-0883;sed -i "s/^/32-13-0883_NORMALIZED_DISTANCE,/" 32-13-0883_NORMALIZED_DISTANCE.csv job_32-13-0883_wCSV_pre_ATROPOS_GMM: cd $(WORKDIR)/32-13-0883;c3d 32-13-0883_pre_ATROPOS_GMM.nii.gz 32-13-0883_labels.nii.gz -lstat > 32-13-0883_pre_ATROPOS_GMM.txt cd $(WORKDIR)/32-13-0883;sed -i "1,2d" 32-13-0883_pre_ATROPOS_GMM.txt cd $(WORKDIR)/32-13-0883;sed "s/\s\+/,/g" 32-13-0883_pre_ATROPOS_GMM.txt > 32-13-0883_pre_ATROPOS_GMM.csv cd $(WORKDIR)/32-13-0883;sed -i "s/^/32-13-0883_pre_ATROPOS_GMM,/" 32-13-0883_pre_ATROPOS_GMM.csv job_32-13-0883_wCSV_pre_ATROPOS_GMM_ECCENTRICITY: cd $(WORKDIR)/32-13-0883;c3d 32-13-0883_pre_ATROPOS_GMM_ECCENTRICITY.nii.gz 32-13-0883_labels.nii.gz -lstat > 32-13-0883_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/32-13-0883;sed -i "1,2d" 32-13-0883_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/32-13-0883;sed "s/\s\+/,/g" 32-13-0883_pre_ATROPOS_GMM_ECCENTRICITY.txt > 32-13-0883_pre_ATROPOS_GMM_ECCENTRICITY.csv cd $(WORKDIR)/32-13-0883;sed -i "s/^/32-13-0883_pre_ATROPOS_GMM_ECCENTRICITY,/" 32-13-0883_pre_ATROPOS_GMM_ECCENTRICITY.csv job_32-13-0883_wCSV_pre_ATROPOS_GMM_ELONGATION: cd $(WORKDIR)/32-13-0883;c3d 32-13-0883_pre_ATROPOS_GMM_ELONGATION.nii.gz 32-13-0883_labels.nii.gz -lstat > 32-13-0883_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/32-13-0883;sed -i "1,2d" 32-13-0883_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/32-13-0883;sed "s/\s\+/,/g" 32-13-0883_pre_ATROPOS_GMM_ELONGATION.txt > 32-13-0883_pre_ATROPOS_GMM_ELONGATION.csv cd $(WORKDIR)/32-13-0883;sed -i "s/^/32-13-0883_pre_ATROPOS_GMM_ELONGATION,/" 32-13-0883_pre_ATROPOS_GMM_ELONGATION.csv job_32-13-0883_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE: cd $(WORKDIR)/32-13-0883;c3d 32-13-0883_pre_ATROPOS_GMM_LABEL3_DISTANCE.nii.gz 32-13-0883_labels.nii.gz -lstat > 32-13-0883_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/32-13-0883;sed -i "1,2d" 32-13-0883_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/32-13-0883;sed "s/\s\+/,/g" 32-13-0883_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt > 32-13-0883_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv cd $(WORKDIR)/32-13-0883;sed -i "s/^/32-13-0883_pre_ATROPOS_GMM_LABEL3_DISTANCE,/" 32-13-0883_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv job_32-13-0883_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME: cd $(WORKDIR)/32-13-0883;c3d 32-13-0883_pre_ATROPOS_GMM_PHYSICAL_VOLUME.nii.gz 32-13-0883_labels.nii.gz -lstat > 32-13-0883_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/32-13-0883;sed -i "1,2d" 32-13-0883_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/32-13-0883;sed "s/\s\+/,/g" 32-13-0883_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt > 32-13-0883_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv cd $(WORKDIR)/32-13-0883;sed -i "s/^/32-13-0883_pre_ATROPOS_GMM_PHYSICAL_VOLUME,/" 32-13-0883_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv job_32-13-0883_wCSV_pre_ATROPOS_GMM_POSTERIORS1: cd $(WORKDIR)/32-13-0883;c3d 32-13-0883_pre_ATROPOS_GMM_POSTERIORS1.nii.gz 32-13-0883_labels.nii.gz -lstat > 32-13-0883_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/32-13-0883;sed -i "1,2d" 32-13-0883_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/32-13-0883;sed "s/\s\+/,/g" 32-13-0883_pre_ATROPOS_GMM_POSTERIORS1.txt > 32-13-0883_pre_ATROPOS_GMM_POSTERIORS1.csv cd $(WORKDIR)/32-13-0883;sed -i "s/^/32-13-0883_pre_ATROPOS_GMM_POSTERIORS1,/" 32-13-0883_pre_ATROPOS_GMM_POSTERIORS1.csv job_32-13-0883_wCSV_pre_ATROPOS_GMM_POSTERIORS2: cd $(WORKDIR)/32-13-0883;c3d 32-13-0883_pre_ATROPOS_GMM_POSTERIORS2.nii.gz 32-13-0883_labels.nii.gz -lstat > 32-13-0883_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/32-13-0883;sed -i "1,2d" 32-13-0883_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/32-13-0883;sed "s/\s\+/,/g" 32-13-0883_pre_ATROPOS_GMM_POSTERIORS2.txt > 32-13-0883_pre_ATROPOS_GMM_POSTERIORS2.csv cd $(WORKDIR)/32-13-0883;sed -i "s/^/32-13-0883_pre_ATROPOS_GMM_POSTERIORS2,/" 32-13-0883_pre_ATROPOS_GMM_POSTERIORS2.csv job_32-13-0883_wCSV_pre_ATROPOS_GMM_POSTERIORS3: cd $(WORKDIR)/32-13-0883;c3d 32-13-0883_pre_ATROPOS_GMM_POSTERIORS3.nii.gz 32-13-0883_labels.nii.gz -lstat > 32-13-0883_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/32-13-0883;sed -i "1,2d" 32-13-0883_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/32-13-0883;sed "s/\s\+/,/g" 32-13-0883_pre_ATROPOS_GMM_POSTERIORS3.txt > 32-13-0883_pre_ATROPOS_GMM_POSTERIORS3.csv cd $(WORKDIR)/32-13-0883;sed -i "s/^/32-13-0883_pre_ATROPOS_GMM_POSTERIORS3,/" 32-13-0883_pre_ATROPOS_GMM_POSTERIORS3.csv job_32-13-0883_wCSV_pre_ATROPOS_GMM_POSTERIORS4: cd $(WORKDIR)/32-13-0883;c3d 32-13-0883_pre_ATROPOS_GMM_POSTERIORS4.nii.gz 32-13-0883_labels.nii.gz -lstat > 32-13-0883_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/32-13-0883;sed -i "1,2d" 32-13-0883_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/32-13-0883;sed "s/\s\+/,/g" 32-13-0883_pre_ATROPOS_GMM_POSTERIORS4.txt > 32-13-0883_pre_ATROPOS_GMM_POSTERIORS4.csv cd $(WORKDIR)/32-13-0883;sed -i "s/^/32-13-0883_pre_ATROPOS_GMM_POSTERIORS4,/" 32-13-0883_pre_ATROPOS_GMM_POSTERIORS4.csv job_32-13-0883_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO: cd $(WORKDIR)/32-13-0883;c3d 32-13-0883_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.nii.gz 32-13-0883_labels.nii.gz -lstat > 32-13-0883_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/32-13-0883;sed -i "1,2d" 32-13-0883_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/32-13-0883;sed "s/\s\+/,/g" 32-13-0883_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt > 32-13-0883_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv cd $(WORKDIR)/32-13-0883;sed -i "s/^/32-13-0883_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO,/" 32-13-0883_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv job_32-13-0883_wCSV_pre_ENTROPY_RADIUS_1: cd $(WORKDIR)/32-13-0883;c3d 32-13-0883_pre_ENTROPY_RADIUS_1.nii.gz 32-13-0883_labels.nii.gz -lstat > 32-13-0883_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/32-13-0883;sed -i "1,2d" 32-13-0883_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/32-13-0883;sed "s/\s\+/,/g" 32-13-0883_pre_ENTROPY_RADIUS_1.txt > 32-13-0883_pre_ENTROPY_RADIUS_1.csv cd $(WORKDIR)/32-13-0883;sed -i "s/^/32-13-0883_pre_ENTROPY_RADIUS_1,/" 32-13-0883_pre_ENTROPY_RADIUS_1.csv job_32-13-0883_wCSV_pre_ENTROPY_RADIUS_3: cd $(WORKDIR)/32-13-0883;c3d 32-13-0883_pre_ENTROPY_RADIUS_3.nii.gz 32-13-0883_labels.nii.gz -lstat > 32-13-0883_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/32-13-0883;sed -i "1,2d" 32-13-0883_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/32-13-0883;sed "s/\s\+/,/g" 32-13-0883_pre_ENTROPY_RADIUS_3.txt > 32-13-0883_pre_ENTROPY_RADIUS_3.csv cd $(WORKDIR)/32-13-0883;sed -i "s/^/32-13-0883_pre_ENTROPY_RADIUS_3,/" 32-13-0883_pre_ENTROPY_RADIUS_3.csv job_32-13-0883_wCSV_pre_MEAN_RADIUS_1: cd $(WORKDIR)/32-13-0883;c3d 32-13-0883_pre_MEAN_RADIUS_1.nii.gz 32-13-0883_labels.nii.gz -lstat > 32-13-0883_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/32-13-0883;sed -i "1,2d" 32-13-0883_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/32-13-0883;sed "s/\s\+/,/g" 32-13-0883_pre_MEAN_RADIUS_1.txt > 32-13-0883_pre_MEAN_RADIUS_1.csv cd $(WORKDIR)/32-13-0883;sed -i "s/^/32-13-0883_pre_MEAN_RADIUS_1,/" 32-13-0883_pre_MEAN_RADIUS_1.csv job_32-13-0883_wCSV_pre_MEAN_RADIUS_3: cd $(WORKDIR)/32-13-0883;c3d 32-13-0883_pre_MEAN_RADIUS_3.nii.gz 32-13-0883_labels.nii.gz -lstat > 32-13-0883_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/32-13-0883;sed -i "1,2d" 32-13-0883_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/32-13-0883;sed "s/\s\+/,/g" 32-13-0883_pre_MEAN_RADIUS_3.txt > 32-13-0883_pre_MEAN_RADIUS_3.csv cd $(WORKDIR)/32-13-0883;sed -i "s/^/32-13-0883_pre_MEAN_RADIUS_3,/" 32-13-0883_pre_MEAN_RADIUS_3.csv job_32-13-0883_wCSV_pre_NORMALIZED: cd $(WORKDIR)/32-13-0883;c3d 32-13-0883_pre_NORMALIZED.nii.gz 32-13-0883_labels.nii.gz -lstat > 32-13-0883_pre_NORMALIZED.txt cd $(WORKDIR)/32-13-0883;sed -i "1,2d" 32-13-0883_pre_NORMALIZED.txt cd $(WORKDIR)/32-13-0883;sed "s/\s\+/,/g" 32-13-0883_pre_NORMALIZED.txt > 32-13-0883_pre_NORMALIZED.csv cd $(WORKDIR)/32-13-0883;sed -i "s/^/32-13-0883_pre_NORMALIZED,/" 32-13-0883_pre_NORMALIZED.csv job_32-13-0883_wCSV_pre_SIGMA_RADIUS_1: cd $(WORKDIR)/32-13-0883;c3d 32-13-0883_pre_SIGMA_RADIUS_1.nii.gz 32-13-0883_labels.nii.gz -lstat > 32-13-0883_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/32-13-0883;sed -i "1,2d" 32-13-0883_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/32-13-0883;sed "s/\s\+/,/g" 32-13-0883_pre_SIGMA_RADIUS_1.txt > 32-13-0883_pre_SIGMA_RADIUS_1.csv cd $(WORKDIR)/32-13-0883;sed -i "s/^/32-13-0883_pre_SIGMA_RADIUS_1,/" 32-13-0883_pre_SIGMA_RADIUS_1.csv job_32-13-0883_wCSV_pre_SIGMA_RADIUS_3: cd $(WORKDIR)/32-13-0883;c3d 32-13-0883_pre_SIGMA_RADIUS_3.nii.gz 32-13-0883_labels.nii.gz -lstat > 32-13-0883_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/32-13-0883;sed -i "1,2d" 32-13-0883_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/32-13-0883;sed "s/\s\+/,/g" 32-13-0883_pre_SIGMA_RADIUS_3.txt > 32-13-0883_pre_SIGMA_RADIUS_3.csv cd $(WORKDIR)/32-13-0883;sed -i "s/^/32-13-0883_pre_SIGMA_RADIUS_3,/" 32-13-0883_pre_SIGMA_RADIUS_3.csv job_32-13-0883_wCSV_pre_SKEWNESS_RADIUS_1: cd $(WORKDIR)/32-13-0883;c3d 32-13-0883_pre_SKEWNESS_RADIUS_1.nii.gz 32-13-0883_labels.nii.gz -lstat > 32-13-0883_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/32-13-0883;sed -i "1,2d" 32-13-0883_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/32-13-0883;sed "s/\s\+/,/g" 32-13-0883_pre_SKEWNESS_RADIUS_1.txt > 32-13-0883_pre_SKEWNESS_RADIUS_1.csv cd $(WORKDIR)/32-13-0883;sed -i "s/^/32-13-0883_pre_SKEWNESS_RADIUS_1,/" 32-13-0883_pre_SKEWNESS_RADIUS_1.csv job_32-13-0883_wCSV_pre_SKEWNESS_RADIUS_3: cd $(WORKDIR)/32-13-0883;c3d 32-13-0883_pre_SKEWNESS_RADIUS_3.nii.gz 32-13-0883_labels.nii.gz -lstat > 32-13-0883_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/32-13-0883;sed -i "1,2d" 32-13-0883_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/32-13-0883;sed "s/\s\+/,/g" 32-13-0883_pre_SKEWNESS_RADIUS_3.txt > 32-13-0883_pre_SKEWNESS_RADIUS_3.csv cd $(WORKDIR)/32-13-0883;sed -i "s/^/32-13-0883_pre_SKEWNESS_RADIUS_3,/" 32-13-0883_pre_SKEWNESS_RADIUS_3.csv job_32-13-0883_wCSV_pre__DIFFERENCE: cd $(WORKDIR)/32-13-0883;c3d 32-13-0883_pre__DIFFERENCE.nii.gz 32-13-0883_labels.nii.gz -lstat > 32-13-0883_pre__DIFFERENCE.txt cd $(WORKDIR)/32-13-0883;sed -i "1,2d" 32-13-0883_pre__DIFFERENCE.txt cd $(WORKDIR)/32-13-0883;sed "s/\s\+/,/g" 32-13-0883_pre__DIFFERENCE.txt > 32-13-0883_pre__DIFFERENCE.csv cd $(WORKDIR)/32-13-0883;sed -i "s/^/32-13-0883_pre__DIFFERENCE,/" 32-13-0883_pre__DIFFERENCE.csv job_33-13-0904_crFI: cd $(WORKDIR)/33-13-0904;c3d 33-13-0904_grey.nii.gz 33-13-0904_labels.nii.gz -copy-transform -o 33-13-0904_labels.nii.gz cd $(WORKDIR)/33-13-0904;c3d 33-13-0904_grey.nii.gz -orient RAI -o 33-13-0904_grey.nii.gz cd $(WORKDIR)/33-13-0904;c3d 33-13-0904_labels.nii.gz -orient RAI -o 33-13-0904_labels.nii.gz cd $(WORKDIR)/33-13-0904;c3d 33-13-0904_labels.nii.gz -binarize -o 33-13-0904_mask.nii.gz cd $(WORKDIR)/33-13-0904;../createFeatureImagesOvary.sh -d 3 -x 33-13-0904_mask.nii.gz -l3 -n pre -a 33-13-0904_grey.nii.gz -f 0x2 -o ./33-13-0904_ -r 1 -r 3 -s 2 -b 4 job_33-13-0904_wCSV_NORMALIZED_DISTANCE: cd $(WORKDIR)/33-13-0904;c3d 33-13-0904_NORMALIZED_DISTANCE.nii.gz 33-13-0904_labels.nii.gz -lstat > 33-13-0904_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/33-13-0904;sed -i "1,2d" 33-13-0904_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/33-13-0904;sed "s/\s\+/,/g" 33-13-0904_NORMALIZED_DISTANCE.txt > 33-13-0904_NORMALIZED_DISTANCE.csv cd $(WORKDIR)/33-13-0904;sed -i "s/^/33-13-0904_NORMALIZED_DISTANCE,/" 33-13-0904_NORMALIZED_DISTANCE.csv job_33-13-0904_wCSV_pre_ATROPOS_GMM: cd $(WORKDIR)/33-13-0904;c3d 33-13-0904_pre_ATROPOS_GMM.nii.gz 33-13-0904_labels.nii.gz -lstat > 33-13-0904_pre_ATROPOS_GMM.txt cd $(WORKDIR)/33-13-0904;sed -i "1,2d" 33-13-0904_pre_ATROPOS_GMM.txt cd $(WORKDIR)/33-13-0904;sed "s/\s\+/,/g" 33-13-0904_pre_ATROPOS_GMM.txt > 33-13-0904_pre_ATROPOS_GMM.csv cd $(WORKDIR)/33-13-0904;sed -i "s/^/33-13-0904_pre_ATROPOS_GMM,/" 33-13-0904_pre_ATROPOS_GMM.csv job_33-13-0904_wCSV_pre_ATROPOS_GMM_ECCENTRICITY: cd $(WORKDIR)/33-13-0904;c3d 33-13-0904_pre_ATROPOS_GMM_ECCENTRICITY.nii.gz 33-13-0904_labels.nii.gz -lstat > 33-13-0904_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/33-13-0904;sed -i "1,2d" 33-13-0904_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/33-13-0904;sed "s/\s\+/,/g" 33-13-0904_pre_ATROPOS_GMM_ECCENTRICITY.txt > 33-13-0904_pre_ATROPOS_GMM_ECCENTRICITY.csv cd $(WORKDIR)/33-13-0904;sed -i "s/^/33-13-0904_pre_ATROPOS_GMM_ECCENTRICITY,/" 33-13-0904_pre_ATROPOS_GMM_ECCENTRICITY.csv job_33-13-0904_wCSV_pre_ATROPOS_GMM_ELONGATION: cd $(WORKDIR)/33-13-0904;c3d 33-13-0904_pre_ATROPOS_GMM_ELONGATION.nii.gz 33-13-0904_labels.nii.gz -lstat > 33-13-0904_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/33-13-0904;sed -i "1,2d" 33-13-0904_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/33-13-0904;sed "s/\s\+/,/g" 33-13-0904_pre_ATROPOS_GMM_ELONGATION.txt > 33-13-0904_pre_ATROPOS_GMM_ELONGATION.csv cd $(WORKDIR)/33-13-0904;sed -i "s/^/33-13-0904_pre_ATROPOS_GMM_ELONGATION,/" 33-13-0904_pre_ATROPOS_GMM_ELONGATION.csv job_33-13-0904_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE: cd $(WORKDIR)/33-13-0904;c3d 33-13-0904_pre_ATROPOS_GMM_LABEL3_DISTANCE.nii.gz 33-13-0904_labels.nii.gz -lstat > 33-13-0904_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/33-13-0904;sed -i "1,2d" 33-13-0904_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/33-13-0904;sed "s/\s\+/,/g" 33-13-0904_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt > 33-13-0904_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv cd $(WORKDIR)/33-13-0904;sed -i "s/^/33-13-0904_pre_ATROPOS_GMM_LABEL3_DISTANCE,/" 33-13-0904_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv job_33-13-0904_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME: cd $(WORKDIR)/33-13-0904;c3d 33-13-0904_pre_ATROPOS_GMM_PHYSICAL_VOLUME.nii.gz 33-13-0904_labels.nii.gz -lstat > 33-13-0904_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/33-13-0904;sed -i "1,2d" 33-13-0904_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/33-13-0904;sed "s/\s\+/,/g" 33-13-0904_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt > 33-13-0904_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv cd $(WORKDIR)/33-13-0904;sed -i "s/^/33-13-0904_pre_ATROPOS_GMM_PHYSICAL_VOLUME,/" 33-13-0904_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv job_33-13-0904_wCSV_pre_ATROPOS_GMM_POSTERIORS1: cd $(WORKDIR)/33-13-0904;c3d 33-13-0904_pre_ATROPOS_GMM_POSTERIORS1.nii.gz 33-13-0904_labels.nii.gz -lstat > 33-13-0904_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/33-13-0904;sed -i "1,2d" 33-13-0904_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/33-13-0904;sed "s/\s\+/,/g" 33-13-0904_pre_ATROPOS_GMM_POSTERIORS1.txt > 33-13-0904_pre_ATROPOS_GMM_POSTERIORS1.csv cd $(WORKDIR)/33-13-0904;sed -i "s/^/33-13-0904_pre_ATROPOS_GMM_POSTERIORS1,/" 33-13-0904_pre_ATROPOS_GMM_POSTERIORS1.csv job_33-13-0904_wCSV_pre_ATROPOS_GMM_POSTERIORS2: cd $(WORKDIR)/33-13-0904;c3d 33-13-0904_pre_ATROPOS_GMM_POSTERIORS2.nii.gz 33-13-0904_labels.nii.gz -lstat > 33-13-0904_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/33-13-0904;sed -i "1,2d" 33-13-0904_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/33-13-0904;sed "s/\s\+/,/g" 33-13-0904_pre_ATROPOS_GMM_POSTERIORS2.txt > 33-13-0904_pre_ATROPOS_GMM_POSTERIORS2.csv cd $(WORKDIR)/33-13-0904;sed -i "s/^/33-13-0904_pre_ATROPOS_GMM_POSTERIORS2,/" 33-13-0904_pre_ATROPOS_GMM_POSTERIORS2.csv job_33-13-0904_wCSV_pre_ATROPOS_GMM_POSTERIORS3: cd $(WORKDIR)/33-13-0904;c3d 33-13-0904_pre_ATROPOS_GMM_POSTERIORS3.nii.gz 33-13-0904_labels.nii.gz -lstat > 33-13-0904_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/33-13-0904;sed -i "1,2d" 33-13-0904_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/33-13-0904;sed "s/\s\+/,/g" 33-13-0904_pre_ATROPOS_GMM_POSTERIORS3.txt > 33-13-0904_pre_ATROPOS_GMM_POSTERIORS3.csv cd $(WORKDIR)/33-13-0904;sed -i "s/^/33-13-0904_pre_ATROPOS_GMM_POSTERIORS3,/" 33-13-0904_pre_ATROPOS_GMM_POSTERIORS3.csv job_33-13-0904_wCSV_pre_ATROPOS_GMM_POSTERIORS4: cd $(WORKDIR)/33-13-0904;c3d 33-13-0904_pre_ATROPOS_GMM_POSTERIORS4.nii.gz 33-13-0904_labels.nii.gz -lstat > 33-13-0904_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/33-13-0904;sed -i "1,2d" 33-13-0904_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/33-13-0904;sed "s/\s\+/,/g" 33-13-0904_pre_ATROPOS_GMM_POSTERIORS4.txt > 33-13-0904_pre_ATROPOS_GMM_POSTERIORS4.csv cd $(WORKDIR)/33-13-0904;sed -i "s/^/33-13-0904_pre_ATROPOS_GMM_POSTERIORS4,/" 33-13-0904_pre_ATROPOS_GMM_POSTERIORS4.csv job_33-13-0904_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO: cd $(WORKDIR)/33-13-0904;c3d 33-13-0904_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.nii.gz 33-13-0904_labels.nii.gz -lstat > 33-13-0904_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/33-13-0904;sed -i "1,2d" 33-13-0904_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/33-13-0904;sed "s/\s\+/,/g" 33-13-0904_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt > 33-13-0904_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv cd $(WORKDIR)/33-13-0904;sed -i "s/^/33-13-0904_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO,/" 33-13-0904_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv job_33-13-0904_wCSV_pre_ENTROPY_RADIUS_1: cd $(WORKDIR)/33-13-0904;c3d 33-13-0904_pre_ENTROPY_RADIUS_1.nii.gz 33-13-0904_labels.nii.gz -lstat > 33-13-0904_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/33-13-0904;sed -i "1,2d" 33-13-0904_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/33-13-0904;sed "s/\s\+/,/g" 33-13-0904_pre_ENTROPY_RADIUS_1.txt > 33-13-0904_pre_ENTROPY_RADIUS_1.csv cd $(WORKDIR)/33-13-0904;sed -i "s/^/33-13-0904_pre_ENTROPY_RADIUS_1,/" 33-13-0904_pre_ENTROPY_RADIUS_1.csv job_33-13-0904_wCSV_pre_ENTROPY_RADIUS_3: cd $(WORKDIR)/33-13-0904;c3d 33-13-0904_pre_ENTROPY_RADIUS_3.nii.gz 33-13-0904_labels.nii.gz -lstat > 33-13-0904_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/33-13-0904;sed -i "1,2d" 33-13-0904_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/33-13-0904;sed "s/\s\+/,/g" 33-13-0904_pre_ENTROPY_RADIUS_3.txt > 33-13-0904_pre_ENTROPY_RADIUS_3.csv cd $(WORKDIR)/33-13-0904;sed -i "s/^/33-13-0904_pre_ENTROPY_RADIUS_3,/" 33-13-0904_pre_ENTROPY_RADIUS_3.csv job_33-13-0904_wCSV_pre_MEAN_RADIUS_1: cd $(WORKDIR)/33-13-0904;c3d 33-13-0904_pre_MEAN_RADIUS_1.nii.gz 33-13-0904_labels.nii.gz -lstat > 33-13-0904_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/33-13-0904;sed -i "1,2d" 33-13-0904_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/33-13-0904;sed "s/\s\+/,/g" 33-13-0904_pre_MEAN_RADIUS_1.txt > 33-13-0904_pre_MEAN_RADIUS_1.csv cd $(WORKDIR)/33-13-0904;sed -i "s/^/33-13-0904_pre_MEAN_RADIUS_1,/" 33-13-0904_pre_MEAN_RADIUS_1.csv job_33-13-0904_wCSV_pre_MEAN_RADIUS_3: cd $(WORKDIR)/33-13-0904;c3d 33-13-0904_pre_MEAN_RADIUS_3.nii.gz 33-13-0904_labels.nii.gz -lstat > 33-13-0904_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/33-13-0904;sed -i "1,2d" 33-13-0904_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/33-13-0904;sed "s/\s\+/,/g" 33-13-0904_pre_MEAN_RADIUS_3.txt > 33-13-0904_pre_MEAN_RADIUS_3.csv cd $(WORKDIR)/33-13-0904;sed -i "s/^/33-13-0904_pre_MEAN_RADIUS_3,/" 33-13-0904_pre_MEAN_RADIUS_3.csv job_33-13-0904_wCSV_pre_NORMALIZED: cd $(WORKDIR)/33-13-0904;c3d 33-13-0904_pre_NORMALIZED.nii.gz 33-13-0904_labels.nii.gz -lstat > 33-13-0904_pre_NORMALIZED.txt cd $(WORKDIR)/33-13-0904;sed -i "1,2d" 33-13-0904_pre_NORMALIZED.txt cd $(WORKDIR)/33-13-0904;sed "s/\s\+/,/g" 33-13-0904_pre_NORMALIZED.txt > 33-13-0904_pre_NORMALIZED.csv cd $(WORKDIR)/33-13-0904;sed -i "s/^/33-13-0904_pre_NORMALIZED,/" 33-13-0904_pre_NORMALIZED.csv job_33-13-0904_wCSV_pre_SIGMA_RADIUS_1: cd $(WORKDIR)/33-13-0904;c3d 33-13-0904_pre_SIGMA_RADIUS_1.nii.gz 33-13-0904_labels.nii.gz -lstat > 33-13-0904_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/33-13-0904;sed -i "1,2d" 33-13-0904_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/33-13-0904;sed "s/\s\+/,/g" 33-13-0904_pre_SIGMA_RADIUS_1.txt > 33-13-0904_pre_SIGMA_RADIUS_1.csv cd $(WORKDIR)/33-13-0904;sed -i "s/^/33-13-0904_pre_SIGMA_RADIUS_1,/" 33-13-0904_pre_SIGMA_RADIUS_1.csv job_33-13-0904_wCSV_pre_SIGMA_RADIUS_3: cd $(WORKDIR)/33-13-0904;c3d 33-13-0904_pre_SIGMA_RADIUS_3.nii.gz 33-13-0904_labels.nii.gz -lstat > 33-13-0904_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/33-13-0904;sed -i "1,2d" 33-13-0904_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/33-13-0904;sed "s/\s\+/,/g" 33-13-0904_pre_SIGMA_RADIUS_3.txt > 33-13-0904_pre_SIGMA_RADIUS_3.csv cd $(WORKDIR)/33-13-0904;sed -i "s/^/33-13-0904_pre_SIGMA_RADIUS_3,/" 33-13-0904_pre_SIGMA_RADIUS_3.csv job_33-13-0904_wCSV_pre_SKEWNESS_RADIUS_1: cd $(WORKDIR)/33-13-0904;c3d 33-13-0904_pre_SKEWNESS_RADIUS_1.nii.gz 33-13-0904_labels.nii.gz -lstat > 33-13-0904_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/33-13-0904;sed -i "1,2d" 33-13-0904_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/33-13-0904;sed "s/\s\+/,/g" 33-13-0904_pre_SKEWNESS_RADIUS_1.txt > 33-13-0904_pre_SKEWNESS_RADIUS_1.csv cd $(WORKDIR)/33-13-0904;sed -i "s/^/33-13-0904_pre_SKEWNESS_RADIUS_1,/" 33-13-0904_pre_SKEWNESS_RADIUS_1.csv job_33-13-0904_wCSV_pre_SKEWNESS_RADIUS_3: cd $(WORKDIR)/33-13-0904;c3d 33-13-0904_pre_SKEWNESS_RADIUS_3.nii.gz 33-13-0904_labels.nii.gz -lstat > 33-13-0904_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/33-13-0904;sed -i "1,2d" 33-13-0904_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/33-13-0904;sed "s/\s\+/,/g" 33-13-0904_pre_SKEWNESS_RADIUS_3.txt > 33-13-0904_pre_SKEWNESS_RADIUS_3.csv cd $(WORKDIR)/33-13-0904;sed -i "s/^/33-13-0904_pre_SKEWNESS_RADIUS_3,/" 33-13-0904_pre_SKEWNESS_RADIUS_3.csv job_33-13-0904_wCSV_pre__DIFFERENCE: cd $(WORKDIR)/33-13-0904;c3d 33-13-0904_pre__DIFFERENCE.nii.gz 33-13-0904_labels.nii.gz -lstat > 33-13-0904_pre__DIFFERENCE.txt cd $(WORKDIR)/33-13-0904;sed -i "1,2d" 33-13-0904_pre__DIFFERENCE.txt cd $(WORKDIR)/33-13-0904;sed "s/\s\+/,/g" 33-13-0904_pre__DIFFERENCE.txt > 33-13-0904_pre__DIFFERENCE.csv cd $(WORKDIR)/33-13-0904;sed -i "s/^/33-13-0904_pre__DIFFERENCE,/" 33-13-0904_pre__DIFFERENCE.csv job_34-13-0910_crFI: cd $(WORKDIR)/34-13-0910;c3d 34-13-0910_grey.nii.gz 34-13-0910_labels.nii.gz -copy-transform -o 34-13-0910_labels.nii.gz cd $(WORKDIR)/34-13-0910;c3d 34-13-0910_grey.nii.gz -orient RAI -o 34-13-0910_grey.nii.gz cd $(WORKDIR)/34-13-0910;c3d 34-13-0910_labels.nii.gz -orient RAI -o 34-13-0910_labels.nii.gz cd $(WORKDIR)/34-13-0910;c3d 34-13-0910_labels.nii.gz -binarize -o 34-13-0910_mask.nii.gz cd $(WORKDIR)/34-13-0910;../createFeatureImagesOvary.sh -d 3 -x 34-13-0910_mask.nii.gz -l3 -n pre -a 34-13-0910_grey.nii.gz -f 0x2 -o ./34-13-0910_ -r 1 -r 3 -s 2 -b 4 job_34-13-0910_wCSV_NORMALIZED_DISTANCE: cd $(WORKDIR)/34-13-0910;c3d 34-13-0910_NORMALIZED_DISTANCE.nii.gz 34-13-0910_labels.nii.gz -lstat > 34-13-0910_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/34-13-0910;sed -i "1,2d" 34-13-0910_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/34-13-0910;sed "s/\s\+/,/g" 34-13-0910_NORMALIZED_DISTANCE.txt > 34-13-0910_NORMALIZED_DISTANCE.csv cd $(WORKDIR)/34-13-0910;sed -i "s/^/34-13-0910_NORMALIZED_DISTANCE,/" 34-13-0910_NORMALIZED_DISTANCE.csv job_34-13-0910_wCSV_pre_ATROPOS_GMM: cd $(WORKDIR)/34-13-0910;c3d 34-13-0910_pre_ATROPOS_GMM.nii.gz 34-13-0910_labels.nii.gz -lstat > 34-13-0910_pre_ATROPOS_GMM.txt cd $(WORKDIR)/34-13-0910;sed -i "1,2d" 34-13-0910_pre_ATROPOS_GMM.txt cd $(WORKDIR)/34-13-0910;sed "s/\s\+/,/g" 34-13-0910_pre_ATROPOS_GMM.txt > 34-13-0910_pre_ATROPOS_GMM.csv cd $(WORKDIR)/34-13-0910;sed -i "s/^/34-13-0910_pre_ATROPOS_GMM,/" 34-13-0910_pre_ATROPOS_GMM.csv job_34-13-0910_wCSV_pre_ATROPOS_GMM_ECCENTRICITY: cd $(WORKDIR)/34-13-0910;c3d 34-13-0910_pre_ATROPOS_GMM_ECCENTRICITY.nii.gz 34-13-0910_labels.nii.gz -lstat > 34-13-0910_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/34-13-0910;sed -i "1,2d" 34-13-0910_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/34-13-0910;sed "s/\s\+/,/g" 34-13-0910_pre_ATROPOS_GMM_ECCENTRICITY.txt > 34-13-0910_pre_ATROPOS_GMM_ECCENTRICITY.csv cd $(WORKDIR)/34-13-0910;sed -i "s/^/34-13-0910_pre_ATROPOS_GMM_ECCENTRICITY,/" 34-13-0910_pre_ATROPOS_GMM_ECCENTRICITY.csv job_34-13-0910_wCSV_pre_ATROPOS_GMM_ELONGATION: cd $(WORKDIR)/34-13-0910;c3d 34-13-0910_pre_ATROPOS_GMM_ELONGATION.nii.gz 34-13-0910_labels.nii.gz -lstat > 34-13-0910_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/34-13-0910;sed -i "1,2d" 34-13-0910_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/34-13-0910;sed "s/\s\+/,/g" 34-13-0910_pre_ATROPOS_GMM_ELONGATION.txt > 34-13-0910_pre_ATROPOS_GMM_ELONGATION.csv cd $(WORKDIR)/34-13-0910;sed -i "s/^/34-13-0910_pre_ATROPOS_GMM_ELONGATION,/" 34-13-0910_pre_ATROPOS_GMM_ELONGATION.csv job_34-13-0910_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE: cd $(WORKDIR)/34-13-0910;c3d 34-13-0910_pre_ATROPOS_GMM_LABEL3_DISTANCE.nii.gz 34-13-0910_labels.nii.gz -lstat > 34-13-0910_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/34-13-0910;sed -i "1,2d" 34-13-0910_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/34-13-0910;sed "s/\s\+/,/g" 34-13-0910_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt > 34-13-0910_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv cd $(WORKDIR)/34-13-0910;sed -i "s/^/34-13-0910_pre_ATROPOS_GMM_LABEL3_DISTANCE,/" 34-13-0910_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv job_34-13-0910_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME: cd $(WORKDIR)/34-13-0910;c3d 34-13-0910_pre_ATROPOS_GMM_PHYSICAL_VOLUME.nii.gz 34-13-0910_labels.nii.gz -lstat > 34-13-0910_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/34-13-0910;sed -i "1,2d" 34-13-0910_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/34-13-0910;sed "s/\s\+/,/g" 34-13-0910_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt > 34-13-0910_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv cd $(WORKDIR)/34-13-0910;sed -i "s/^/34-13-0910_pre_ATROPOS_GMM_PHYSICAL_VOLUME,/" 34-13-0910_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv job_34-13-0910_wCSV_pre_ATROPOS_GMM_POSTERIORS1: cd $(WORKDIR)/34-13-0910;c3d 34-13-0910_pre_ATROPOS_GMM_POSTERIORS1.nii.gz 34-13-0910_labels.nii.gz -lstat > 34-13-0910_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/34-13-0910;sed -i "1,2d" 34-13-0910_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/34-13-0910;sed "s/\s\+/,/g" 34-13-0910_pre_ATROPOS_GMM_POSTERIORS1.txt > 34-13-0910_pre_ATROPOS_GMM_POSTERIORS1.csv cd $(WORKDIR)/34-13-0910;sed -i "s/^/34-13-0910_pre_ATROPOS_GMM_POSTERIORS1,/" 34-13-0910_pre_ATROPOS_GMM_POSTERIORS1.csv job_34-13-0910_wCSV_pre_ATROPOS_GMM_POSTERIORS2: cd $(WORKDIR)/34-13-0910;c3d 34-13-0910_pre_ATROPOS_GMM_POSTERIORS2.nii.gz 34-13-0910_labels.nii.gz -lstat > 34-13-0910_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/34-13-0910;sed -i "1,2d" 34-13-0910_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/34-13-0910;sed "s/\s\+/,/g" 34-13-0910_pre_ATROPOS_GMM_POSTERIORS2.txt > 34-13-0910_pre_ATROPOS_GMM_POSTERIORS2.csv cd $(WORKDIR)/34-13-0910;sed -i "s/^/34-13-0910_pre_ATROPOS_GMM_POSTERIORS2,/" 34-13-0910_pre_ATROPOS_GMM_POSTERIORS2.csv job_34-13-0910_wCSV_pre_ATROPOS_GMM_POSTERIORS3: cd $(WORKDIR)/34-13-0910;c3d 34-13-0910_pre_ATROPOS_GMM_POSTERIORS3.nii.gz 34-13-0910_labels.nii.gz -lstat > 34-13-0910_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/34-13-0910;sed -i "1,2d" 34-13-0910_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/34-13-0910;sed "s/\s\+/,/g" 34-13-0910_pre_ATROPOS_GMM_POSTERIORS3.txt > 34-13-0910_pre_ATROPOS_GMM_POSTERIORS3.csv cd $(WORKDIR)/34-13-0910;sed -i "s/^/34-13-0910_pre_ATROPOS_GMM_POSTERIORS3,/" 34-13-0910_pre_ATROPOS_GMM_POSTERIORS3.csv job_34-13-0910_wCSV_pre_ATROPOS_GMM_POSTERIORS4: cd $(WORKDIR)/34-13-0910;c3d 34-13-0910_pre_ATROPOS_GMM_POSTERIORS4.nii.gz 34-13-0910_labels.nii.gz -lstat > 34-13-0910_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/34-13-0910;sed -i "1,2d" 34-13-0910_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/34-13-0910;sed "s/\s\+/,/g" 34-13-0910_pre_ATROPOS_GMM_POSTERIORS4.txt > 34-13-0910_pre_ATROPOS_GMM_POSTERIORS4.csv cd $(WORKDIR)/34-13-0910;sed -i "s/^/34-13-0910_pre_ATROPOS_GMM_POSTERIORS4,/" 34-13-0910_pre_ATROPOS_GMM_POSTERIORS4.csv job_34-13-0910_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO: cd $(WORKDIR)/34-13-0910;c3d 34-13-0910_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.nii.gz 34-13-0910_labels.nii.gz -lstat > 34-13-0910_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/34-13-0910;sed -i "1,2d" 34-13-0910_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/34-13-0910;sed "s/\s\+/,/g" 34-13-0910_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt > 34-13-0910_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv cd $(WORKDIR)/34-13-0910;sed -i "s/^/34-13-0910_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO,/" 34-13-0910_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv job_34-13-0910_wCSV_pre_ENTROPY_RADIUS_1: cd $(WORKDIR)/34-13-0910;c3d 34-13-0910_pre_ENTROPY_RADIUS_1.nii.gz 34-13-0910_labels.nii.gz -lstat > 34-13-0910_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/34-13-0910;sed -i "1,2d" 34-13-0910_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/34-13-0910;sed "s/\s\+/,/g" 34-13-0910_pre_ENTROPY_RADIUS_1.txt > 34-13-0910_pre_ENTROPY_RADIUS_1.csv cd $(WORKDIR)/34-13-0910;sed -i "s/^/34-13-0910_pre_ENTROPY_RADIUS_1,/" 34-13-0910_pre_ENTROPY_RADIUS_1.csv job_34-13-0910_wCSV_pre_ENTROPY_RADIUS_3: cd $(WORKDIR)/34-13-0910;c3d 34-13-0910_pre_ENTROPY_RADIUS_3.nii.gz 34-13-0910_labels.nii.gz -lstat > 34-13-0910_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/34-13-0910;sed -i "1,2d" 34-13-0910_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/34-13-0910;sed "s/\s\+/,/g" 34-13-0910_pre_ENTROPY_RADIUS_3.txt > 34-13-0910_pre_ENTROPY_RADIUS_3.csv cd $(WORKDIR)/34-13-0910;sed -i "s/^/34-13-0910_pre_ENTROPY_RADIUS_3,/" 34-13-0910_pre_ENTROPY_RADIUS_3.csv job_34-13-0910_wCSV_pre_MEAN_RADIUS_1: cd $(WORKDIR)/34-13-0910;c3d 34-13-0910_pre_MEAN_RADIUS_1.nii.gz 34-13-0910_labels.nii.gz -lstat > 34-13-0910_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/34-13-0910;sed -i "1,2d" 34-13-0910_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/34-13-0910;sed "s/\s\+/,/g" 34-13-0910_pre_MEAN_RADIUS_1.txt > 34-13-0910_pre_MEAN_RADIUS_1.csv cd $(WORKDIR)/34-13-0910;sed -i "s/^/34-13-0910_pre_MEAN_RADIUS_1,/" 34-13-0910_pre_MEAN_RADIUS_1.csv job_34-13-0910_wCSV_pre_MEAN_RADIUS_3: cd $(WORKDIR)/34-13-0910;c3d 34-13-0910_pre_MEAN_RADIUS_3.nii.gz 34-13-0910_labels.nii.gz -lstat > 34-13-0910_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/34-13-0910;sed -i "1,2d" 34-13-0910_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/34-13-0910;sed "s/\s\+/,/g" 34-13-0910_pre_MEAN_RADIUS_3.txt > 34-13-0910_pre_MEAN_RADIUS_3.csv cd $(WORKDIR)/34-13-0910;sed -i "s/^/34-13-0910_pre_MEAN_RADIUS_3,/" 34-13-0910_pre_MEAN_RADIUS_3.csv job_34-13-0910_wCSV_pre_NORMALIZED: cd $(WORKDIR)/34-13-0910;c3d 34-13-0910_pre_NORMALIZED.nii.gz 34-13-0910_labels.nii.gz -lstat > 34-13-0910_pre_NORMALIZED.txt cd $(WORKDIR)/34-13-0910;sed -i "1,2d" 34-13-0910_pre_NORMALIZED.txt cd $(WORKDIR)/34-13-0910;sed "s/\s\+/,/g" 34-13-0910_pre_NORMALIZED.txt > 34-13-0910_pre_NORMALIZED.csv cd $(WORKDIR)/34-13-0910;sed -i "s/^/34-13-0910_pre_NORMALIZED,/" 34-13-0910_pre_NORMALIZED.csv job_34-13-0910_wCSV_pre_SIGMA_RADIUS_1: cd $(WORKDIR)/34-13-0910;c3d 34-13-0910_pre_SIGMA_RADIUS_1.nii.gz 34-13-0910_labels.nii.gz -lstat > 34-13-0910_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/34-13-0910;sed -i "1,2d" 34-13-0910_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/34-13-0910;sed "s/\s\+/,/g" 34-13-0910_pre_SIGMA_RADIUS_1.txt > 34-13-0910_pre_SIGMA_RADIUS_1.csv cd $(WORKDIR)/34-13-0910;sed -i "s/^/34-13-0910_pre_SIGMA_RADIUS_1,/" 34-13-0910_pre_SIGMA_RADIUS_1.csv job_34-13-0910_wCSV_pre_SIGMA_RADIUS_3: cd $(WORKDIR)/34-13-0910;c3d 34-13-0910_pre_SIGMA_RADIUS_3.nii.gz 34-13-0910_labels.nii.gz -lstat > 34-13-0910_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/34-13-0910;sed -i "1,2d" 34-13-0910_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/34-13-0910;sed "s/\s\+/,/g" 34-13-0910_pre_SIGMA_RADIUS_3.txt > 34-13-0910_pre_SIGMA_RADIUS_3.csv cd $(WORKDIR)/34-13-0910;sed -i "s/^/34-13-0910_pre_SIGMA_RADIUS_3,/" 34-13-0910_pre_SIGMA_RADIUS_3.csv job_34-13-0910_wCSV_pre_SKEWNESS_RADIUS_1: cd $(WORKDIR)/34-13-0910;c3d 34-13-0910_pre_SKEWNESS_RADIUS_1.nii.gz 34-13-0910_labels.nii.gz -lstat > 34-13-0910_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/34-13-0910;sed -i "1,2d" 34-13-0910_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/34-13-0910;sed "s/\s\+/,/g" 34-13-0910_pre_SKEWNESS_RADIUS_1.txt > 34-13-0910_pre_SKEWNESS_RADIUS_1.csv cd $(WORKDIR)/34-13-0910;sed -i "s/^/34-13-0910_pre_SKEWNESS_RADIUS_1,/" 34-13-0910_pre_SKEWNESS_RADIUS_1.csv job_34-13-0910_wCSV_pre_SKEWNESS_RADIUS_3: cd $(WORKDIR)/34-13-0910;c3d 34-13-0910_pre_SKEWNESS_RADIUS_3.nii.gz 34-13-0910_labels.nii.gz -lstat > 34-13-0910_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/34-13-0910;sed -i "1,2d" 34-13-0910_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/34-13-0910;sed "s/\s\+/,/g" 34-13-0910_pre_SKEWNESS_RADIUS_3.txt > 34-13-0910_pre_SKEWNESS_RADIUS_3.csv cd $(WORKDIR)/34-13-0910;sed -i "s/^/34-13-0910_pre_SKEWNESS_RADIUS_3,/" 34-13-0910_pre_SKEWNESS_RADIUS_3.csv job_34-13-0910_wCSV_pre__DIFFERENCE: cd $(WORKDIR)/34-13-0910;c3d 34-13-0910_pre__DIFFERENCE.nii.gz 34-13-0910_labels.nii.gz -lstat > 34-13-0910_pre__DIFFERENCE.txt cd $(WORKDIR)/34-13-0910;sed -i "1,2d" 34-13-0910_pre__DIFFERENCE.txt cd $(WORKDIR)/34-13-0910;sed "s/\s\+/,/g" 34-13-0910_pre__DIFFERENCE.txt > 34-13-0910_pre__DIFFERENCE.csv cd $(WORKDIR)/34-13-0910;sed -i "s/^/34-13-0910_pre__DIFFERENCE,/" 34-13-0910_pre__DIFFERENCE.csv job_35-13-0911_crFI: cd $(WORKDIR)/35-13-0911;c3d 35-13-0911_grey.nii.gz 35-13-0911_labels.nii.gz -copy-transform -o 35-13-0911_labels.nii.gz cd $(WORKDIR)/35-13-0911;c3d 35-13-0911_grey.nii.gz -orient RAI -o 35-13-0911_grey.nii.gz cd $(WORKDIR)/35-13-0911;c3d 35-13-0911_labels.nii.gz -orient RAI -o 35-13-0911_labels.nii.gz cd $(WORKDIR)/35-13-0911;c3d 35-13-0911_labels.nii.gz -binarize -o 35-13-0911_mask.nii.gz cd $(WORKDIR)/35-13-0911;../createFeatureImagesOvary.sh -d 3 -x 35-13-0911_mask.nii.gz -l3 -n pre -a 35-13-0911_grey.nii.gz -f 0x2 -o ./35-13-0911_ -r 1 -r 3 -s 2 -b 4 job_35-13-0911_wCSV_NORMALIZED_DISTANCE: cd $(WORKDIR)/35-13-0911;c3d 35-13-0911_NORMALIZED_DISTANCE.nii.gz 35-13-0911_labels.nii.gz -lstat > 35-13-0911_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/35-13-0911;sed -i "1,2d" 35-13-0911_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/35-13-0911;sed "s/\s\+/,/g" 35-13-0911_NORMALIZED_DISTANCE.txt > 35-13-0911_NORMALIZED_DISTANCE.csv cd $(WORKDIR)/35-13-0911;sed -i "s/^/35-13-0911_NORMALIZED_DISTANCE,/" 35-13-0911_NORMALIZED_DISTANCE.csv job_35-13-0911_wCSV_pre_ATROPOS_GMM: cd $(WORKDIR)/35-13-0911;c3d 35-13-0911_pre_ATROPOS_GMM.nii.gz 35-13-0911_labels.nii.gz -lstat > 35-13-0911_pre_ATROPOS_GMM.txt cd $(WORKDIR)/35-13-0911;sed -i "1,2d" 35-13-0911_pre_ATROPOS_GMM.txt cd $(WORKDIR)/35-13-0911;sed "s/\s\+/,/g" 35-13-0911_pre_ATROPOS_GMM.txt > 35-13-0911_pre_ATROPOS_GMM.csv cd $(WORKDIR)/35-13-0911;sed -i "s/^/35-13-0911_pre_ATROPOS_GMM,/" 35-13-0911_pre_ATROPOS_GMM.csv job_35-13-0911_wCSV_pre_ATROPOS_GMM_ECCENTRICITY: cd $(WORKDIR)/35-13-0911;c3d 35-13-0911_pre_ATROPOS_GMM_ECCENTRICITY.nii.gz 35-13-0911_labels.nii.gz -lstat > 35-13-0911_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/35-13-0911;sed -i "1,2d" 35-13-0911_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/35-13-0911;sed "s/\s\+/,/g" 35-13-0911_pre_ATROPOS_GMM_ECCENTRICITY.txt > 35-13-0911_pre_ATROPOS_GMM_ECCENTRICITY.csv cd $(WORKDIR)/35-13-0911;sed -i "s/^/35-13-0911_pre_ATROPOS_GMM_ECCENTRICITY,/" 35-13-0911_pre_ATROPOS_GMM_ECCENTRICITY.csv job_35-13-0911_wCSV_pre_ATROPOS_GMM_ELONGATION: cd $(WORKDIR)/35-13-0911;c3d 35-13-0911_pre_ATROPOS_GMM_ELONGATION.nii.gz 35-13-0911_labels.nii.gz -lstat > 35-13-0911_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/35-13-0911;sed -i "1,2d" 35-13-0911_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/35-13-0911;sed "s/\s\+/,/g" 35-13-0911_pre_ATROPOS_GMM_ELONGATION.txt > 35-13-0911_pre_ATROPOS_GMM_ELONGATION.csv cd $(WORKDIR)/35-13-0911;sed -i "s/^/35-13-0911_pre_ATROPOS_GMM_ELONGATION,/" 35-13-0911_pre_ATROPOS_GMM_ELONGATION.csv job_35-13-0911_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE: cd $(WORKDIR)/35-13-0911;c3d 35-13-0911_pre_ATROPOS_GMM_LABEL3_DISTANCE.nii.gz 35-13-0911_labels.nii.gz -lstat > 35-13-0911_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/35-13-0911;sed -i "1,2d" 35-13-0911_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/35-13-0911;sed "s/\s\+/,/g" 35-13-0911_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt > 35-13-0911_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv cd $(WORKDIR)/35-13-0911;sed -i "s/^/35-13-0911_pre_ATROPOS_GMM_LABEL3_DISTANCE,/" 35-13-0911_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv job_35-13-0911_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME: cd $(WORKDIR)/35-13-0911;c3d 35-13-0911_pre_ATROPOS_GMM_PHYSICAL_VOLUME.nii.gz 35-13-0911_labels.nii.gz -lstat > 35-13-0911_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/35-13-0911;sed -i "1,2d" 35-13-0911_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/35-13-0911;sed "s/\s\+/,/g" 35-13-0911_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt > 35-13-0911_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv cd $(WORKDIR)/35-13-0911;sed -i "s/^/35-13-0911_pre_ATROPOS_GMM_PHYSICAL_VOLUME,/" 35-13-0911_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv job_35-13-0911_wCSV_pre_ATROPOS_GMM_POSTERIORS1: cd $(WORKDIR)/35-13-0911;c3d 35-13-0911_pre_ATROPOS_GMM_POSTERIORS1.nii.gz 35-13-0911_labels.nii.gz -lstat > 35-13-0911_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/35-13-0911;sed -i "1,2d" 35-13-0911_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/35-13-0911;sed "s/\s\+/,/g" 35-13-0911_pre_ATROPOS_GMM_POSTERIORS1.txt > 35-13-0911_pre_ATROPOS_GMM_POSTERIORS1.csv cd $(WORKDIR)/35-13-0911;sed -i "s/^/35-13-0911_pre_ATROPOS_GMM_POSTERIORS1,/" 35-13-0911_pre_ATROPOS_GMM_POSTERIORS1.csv job_35-13-0911_wCSV_pre_ATROPOS_GMM_POSTERIORS2: cd $(WORKDIR)/35-13-0911;c3d 35-13-0911_pre_ATROPOS_GMM_POSTERIORS2.nii.gz 35-13-0911_labels.nii.gz -lstat > 35-13-0911_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/35-13-0911;sed -i "1,2d" 35-13-0911_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/35-13-0911;sed "s/\s\+/,/g" 35-13-0911_pre_ATROPOS_GMM_POSTERIORS2.txt > 35-13-0911_pre_ATROPOS_GMM_POSTERIORS2.csv cd $(WORKDIR)/35-13-0911;sed -i "s/^/35-13-0911_pre_ATROPOS_GMM_POSTERIORS2,/" 35-13-0911_pre_ATROPOS_GMM_POSTERIORS2.csv job_35-13-0911_wCSV_pre_ATROPOS_GMM_POSTERIORS3: cd $(WORKDIR)/35-13-0911;c3d 35-13-0911_pre_ATROPOS_GMM_POSTERIORS3.nii.gz 35-13-0911_labels.nii.gz -lstat > 35-13-0911_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/35-13-0911;sed -i "1,2d" 35-13-0911_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/35-13-0911;sed "s/\s\+/,/g" 35-13-0911_pre_ATROPOS_GMM_POSTERIORS3.txt > 35-13-0911_pre_ATROPOS_GMM_POSTERIORS3.csv cd $(WORKDIR)/35-13-0911;sed -i "s/^/35-13-0911_pre_ATROPOS_GMM_POSTERIORS3,/" 35-13-0911_pre_ATROPOS_GMM_POSTERIORS3.csv job_35-13-0911_wCSV_pre_ATROPOS_GMM_POSTERIORS4: cd $(WORKDIR)/35-13-0911;c3d 35-13-0911_pre_ATROPOS_GMM_POSTERIORS4.nii.gz 35-13-0911_labels.nii.gz -lstat > 35-13-0911_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/35-13-0911;sed -i "1,2d" 35-13-0911_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/35-13-0911;sed "s/\s\+/,/g" 35-13-0911_pre_ATROPOS_GMM_POSTERIORS4.txt > 35-13-0911_pre_ATROPOS_GMM_POSTERIORS4.csv cd $(WORKDIR)/35-13-0911;sed -i "s/^/35-13-0911_pre_ATROPOS_GMM_POSTERIORS4,/" 35-13-0911_pre_ATROPOS_GMM_POSTERIORS4.csv job_35-13-0911_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO: cd $(WORKDIR)/35-13-0911;c3d 35-13-0911_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.nii.gz 35-13-0911_labels.nii.gz -lstat > 35-13-0911_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/35-13-0911;sed -i "1,2d" 35-13-0911_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/35-13-0911;sed "s/\s\+/,/g" 35-13-0911_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt > 35-13-0911_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv cd $(WORKDIR)/35-13-0911;sed -i "s/^/35-13-0911_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO,/" 35-13-0911_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv job_35-13-0911_wCSV_pre_ENTROPY_RADIUS_1: cd $(WORKDIR)/35-13-0911;c3d 35-13-0911_pre_ENTROPY_RADIUS_1.nii.gz 35-13-0911_labels.nii.gz -lstat > 35-13-0911_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/35-13-0911;sed -i "1,2d" 35-13-0911_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/35-13-0911;sed "s/\s\+/,/g" 35-13-0911_pre_ENTROPY_RADIUS_1.txt > 35-13-0911_pre_ENTROPY_RADIUS_1.csv cd $(WORKDIR)/35-13-0911;sed -i "s/^/35-13-0911_pre_ENTROPY_RADIUS_1,/" 35-13-0911_pre_ENTROPY_RADIUS_1.csv job_35-13-0911_wCSV_pre_ENTROPY_RADIUS_3: cd $(WORKDIR)/35-13-0911;c3d 35-13-0911_pre_ENTROPY_RADIUS_3.nii.gz 35-13-0911_labels.nii.gz -lstat > 35-13-0911_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/35-13-0911;sed -i "1,2d" 35-13-0911_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/35-13-0911;sed "s/\s\+/,/g" 35-13-0911_pre_ENTROPY_RADIUS_3.txt > 35-13-0911_pre_ENTROPY_RADIUS_3.csv cd $(WORKDIR)/35-13-0911;sed -i "s/^/35-13-0911_pre_ENTROPY_RADIUS_3,/" 35-13-0911_pre_ENTROPY_RADIUS_3.csv job_35-13-0911_wCSV_pre_MEAN_RADIUS_1: cd $(WORKDIR)/35-13-0911;c3d 35-13-0911_pre_MEAN_RADIUS_1.nii.gz 35-13-0911_labels.nii.gz -lstat > 35-13-0911_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/35-13-0911;sed -i "1,2d" 35-13-0911_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/35-13-0911;sed "s/\s\+/,/g" 35-13-0911_pre_MEAN_RADIUS_1.txt > 35-13-0911_pre_MEAN_RADIUS_1.csv cd $(WORKDIR)/35-13-0911;sed -i "s/^/35-13-0911_pre_MEAN_RADIUS_1,/" 35-13-0911_pre_MEAN_RADIUS_1.csv job_35-13-0911_wCSV_pre_MEAN_RADIUS_3: cd $(WORKDIR)/35-13-0911;c3d 35-13-0911_pre_MEAN_RADIUS_3.nii.gz 35-13-0911_labels.nii.gz -lstat > 35-13-0911_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/35-13-0911;sed -i "1,2d" 35-13-0911_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/35-13-0911;sed "s/\s\+/,/g" 35-13-0911_pre_MEAN_RADIUS_3.txt > 35-13-0911_pre_MEAN_RADIUS_3.csv cd $(WORKDIR)/35-13-0911;sed -i "s/^/35-13-0911_pre_MEAN_RADIUS_3,/" 35-13-0911_pre_MEAN_RADIUS_3.csv job_35-13-0911_wCSV_pre_NORMALIZED: cd $(WORKDIR)/35-13-0911;c3d 35-13-0911_pre_NORMALIZED.nii.gz 35-13-0911_labels.nii.gz -lstat > 35-13-0911_pre_NORMALIZED.txt cd $(WORKDIR)/35-13-0911;sed -i "1,2d" 35-13-0911_pre_NORMALIZED.txt cd $(WORKDIR)/35-13-0911;sed "s/\s\+/,/g" 35-13-0911_pre_NORMALIZED.txt > 35-13-0911_pre_NORMALIZED.csv cd $(WORKDIR)/35-13-0911;sed -i "s/^/35-13-0911_pre_NORMALIZED,/" 35-13-0911_pre_NORMALIZED.csv job_35-13-0911_wCSV_pre_SIGMA_RADIUS_1: cd $(WORKDIR)/35-13-0911;c3d 35-13-0911_pre_SIGMA_RADIUS_1.nii.gz 35-13-0911_labels.nii.gz -lstat > 35-13-0911_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/35-13-0911;sed -i "1,2d" 35-13-0911_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/35-13-0911;sed "s/\s\+/,/g" 35-13-0911_pre_SIGMA_RADIUS_1.txt > 35-13-0911_pre_SIGMA_RADIUS_1.csv cd $(WORKDIR)/35-13-0911;sed -i "s/^/35-13-0911_pre_SIGMA_RADIUS_1,/" 35-13-0911_pre_SIGMA_RADIUS_1.csv job_35-13-0911_wCSV_pre_SIGMA_RADIUS_3: cd $(WORKDIR)/35-13-0911;c3d 35-13-0911_pre_SIGMA_RADIUS_3.nii.gz 35-13-0911_labels.nii.gz -lstat > 35-13-0911_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/35-13-0911;sed -i "1,2d" 35-13-0911_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/35-13-0911;sed "s/\s\+/,/g" 35-13-0911_pre_SIGMA_RADIUS_3.txt > 35-13-0911_pre_SIGMA_RADIUS_3.csv cd $(WORKDIR)/35-13-0911;sed -i "s/^/35-13-0911_pre_SIGMA_RADIUS_3,/" 35-13-0911_pre_SIGMA_RADIUS_3.csv job_35-13-0911_wCSV_pre_SKEWNESS_RADIUS_1: cd $(WORKDIR)/35-13-0911;c3d 35-13-0911_pre_SKEWNESS_RADIUS_1.nii.gz 35-13-0911_labels.nii.gz -lstat > 35-13-0911_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/35-13-0911;sed -i "1,2d" 35-13-0911_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/35-13-0911;sed "s/\s\+/,/g" 35-13-0911_pre_SKEWNESS_RADIUS_1.txt > 35-13-0911_pre_SKEWNESS_RADIUS_1.csv cd $(WORKDIR)/35-13-0911;sed -i "s/^/35-13-0911_pre_SKEWNESS_RADIUS_1,/" 35-13-0911_pre_SKEWNESS_RADIUS_1.csv job_35-13-0911_wCSV_pre_SKEWNESS_RADIUS_3: cd $(WORKDIR)/35-13-0911;c3d 35-13-0911_pre_SKEWNESS_RADIUS_3.nii.gz 35-13-0911_labels.nii.gz -lstat > 35-13-0911_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/35-13-0911;sed -i "1,2d" 35-13-0911_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/35-13-0911;sed "s/\s\+/,/g" 35-13-0911_pre_SKEWNESS_RADIUS_3.txt > 35-13-0911_pre_SKEWNESS_RADIUS_3.csv cd $(WORKDIR)/35-13-0911;sed -i "s/^/35-13-0911_pre_SKEWNESS_RADIUS_3,/" 35-13-0911_pre_SKEWNESS_RADIUS_3.csv job_35-13-0911_wCSV_pre__DIFFERENCE: cd $(WORKDIR)/35-13-0911;c3d 35-13-0911_pre__DIFFERENCE.nii.gz 35-13-0911_labels.nii.gz -lstat > 35-13-0911_pre__DIFFERENCE.txt cd $(WORKDIR)/35-13-0911;sed -i "1,2d" 35-13-0911_pre__DIFFERENCE.txt cd $(WORKDIR)/35-13-0911;sed "s/\s\+/,/g" 35-13-0911_pre__DIFFERENCE.txt > 35-13-0911_pre__DIFFERENCE.csv cd $(WORKDIR)/35-13-0911;sed -i "s/^/35-13-0911_pre__DIFFERENCE,/" 35-13-0911_pre__DIFFERENCE.csv job_36-13-0916_crFI: cd $(WORKDIR)/36-13-0916;c3d 36-13-0916_grey.nii.gz 36-13-0916_labels.nii.gz -copy-transform -o 36-13-0916_labels.nii.gz cd $(WORKDIR)/36-13-0916;c3d 36-13-0916_grey.nii.gz -orient RAI -o 36-13-0916_grey.nii.gz cd $(WORKDIR)/36-13-0916;c3d 36-13-0916_labels.nii.gz -orient RAI -o 36-13-0916_labels.nii.gz cd $(WORKDIR)/36-13-0916;c3d 36-13-0916_labels.nii.gz -binarize -o 36-13-0916_mask.nii.gz cd $(WORKDIR)/36-13-0916;../createFeatureImagesOvary.sh -d 3 -x 36-13-0916_mask.nii.gz -l3 -n pre -a 36-13-0916_grey.nii.gz -f 0x2 -o ./36-13-0916_ -r 1 -r 3 -s 2 -b 4 job_36-13-0916_wCSV_NORMALIZED_DISTANCE: cd $(WORKDIR)/36-13-0916;c3d 36-13-0916_NORMALIZED_DISTANCE.nii.gz 36-13-0916_labels.nii.gz -lstat > 36-13-0916_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/36-13-0916;sed -i "1,2d" 36-13-0916_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/36-13-0916;sed "s/\s\+/,/g" 36-13-0916_NORMALIZED_DISTANCE.txt > 36-13-0916_NORMALIZED_DISTANCE.csv cd $(WORKDIR)/36-13-0916;sed -i "s/^/36-13-0916_NORMALIZED_DISTANCE,/" 36-13-0916_NORMALIZED_DISTANCE.csv job_36-13-0916_wCSV_pre_ATROPOS_GMM: cd $(WORKDIR)/36-13-0916;c3d 36-13-0916_pre_ATROPOS_GMM.nii.gz 36-13-0916_labels.nii.gz -lstat > 36-13-0916_pre_ATROPOS_GMM.txt cd $(WORKDIR)/36-13-0916;sed -i "1,2d" 36-13-0916_pre_ATROPOS_GMM.txt cd $(WORKDIR)/36-13-0916;sed "s/\s\+/,/g" 36-13-0916_pre_ATROPOS_GMM.txt > 36-13-0916_pre_ATROPOS_GMM.csv cd $(WORKDIR)/36-13-0916;sed -i "s/^/36-13-0916_pre_ATROPOS_GMM,/" 36-13-0916_pre_ATROPOS_GMM.csv job_36-13-0916_wCSV_pre_ATROPOS_GMM_ECCENTRICITY: cd $(WORKDIR)/36-13-0916;c3d 36-13-0916_pre_ATROPOS_GMM_ECCENTRICITY.nii.gz 36-13-0916_labels.nii.gz -lstat > 36-13-0916_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/36-13-0916;sed -i "1,2d" 36-13-0916_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/36-13-0916;sed "s/\s\+/,/g" 36-13-0916_pre_ATROPOS_GMM_ECCENTRICITY.txt > 36-13-0916_pre_ATROPOS_GMM_ECCENTRICITY.csv cd $(WORKDIR)/36-13-0916;sed -i "s/^/36-13-0916_pre_ATROPOS_GMM_ECCENTRICITY,/" 36-13-0916_pre_ATROPOS_GMM_ECCENTRICITY.csv job_36-13-0916_wCSV_pre_ATROPOS_GMM_ELONGATION: cd $(WORKDIR)/36-13-0916;c3d 36-13-0916_pre_ATROPOS_GMM_ELONGATION.nii.gz 36-13-0916_labels.nii.gz -lstat > 36-13-0916_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/36-13-0916;sed -i "1,2d" 36-13-0916_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/36-13-0916;sed "s/\s\+/,/g" 36-13-0916_pre_ATROPOS_GMM_ELONGATION.txt > 36-13-0916_pre_ATROPOS_GMM_ELONGATION.csv cd $(WORKDIR)/36-13-0916;sed -i "s/^/36-13-0916_pre_ATROPOS_GMM_ELONGATION,/" 36-13-0916_pre_ATROPOS_GMM_ELONGATION.csv job_36-13-0916_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE: cd $(WORKDIR)/36-13-0916;c3d 36-13-0916_pre_ATROPOS_GMM_LABEL3_DISTANCE.nii.gz 36-13-0916_labels.nii.gz -lstat > 36-13-0916_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/36-13-0916;sed -i "1,2d" 36-13-0916_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/36-13-0916;sed "s/\s\+/,/g" 36-13-0916_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt > 36-13-0916_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv cd $(WORKDIR)/36-13-0916;sed -i "s/^/36-13-0916_pre_ATROPOS_GMM_LABEL3_DISTANCE,/" 36-13-0916_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv job_36-13-0916_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME: cd $(WORKDIR)/36-13-0916;c3d 36-13-0916_pre_ATROPOS_GMM_PHYSICAL_VOLUME.nii.gz 36-13-0916_labels.nii.gz -lstat > 36-13-0916_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/36-13-0916;sed -i "1,2d" 36-13-0916_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/36-13-0916;sed "s/\s\+/,/g" 36-13-0916_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt > 36-13-0916_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv cd $(WORKDIR)/36-13-0916;sed -i "s/^/36-13-0916_pre_ATROPOS_GMM_PHYSICAL_VOLUME,/" 36-13-0916_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv job_36-13-0916_wCSV_pre_ATROPOS_GMM_POSTERIORS1: cd $(WORKDIR)/36-13-0916;c3d 36-13-0916_pre_ATROPOS_GMM_POSTERIORS1.nii.gz 36-13-0916_labels.nii.gz -lstat > 36-13-0916_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/36-13-0916;sed -i "1,2d" 36-13-0916_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/36-13-0916;sed "s/\s\+/,/g" 36-13-0916_pre_ATROPOS_GMM_POSTERIORS1.txt > 36-13-0916_pre_ATROPOS_GMM_POSTERIORS1.csv cd $(WORKDIR)/36-13-0916;sed -i "s/^/36-13-0916_pre_ATROPOS_GMM_POSTERIORS1,/" 36-13-0916_pre_ATROPOS_GMM_POSTERIORS1.csv job_36-13-0916_wCSV_pre_ATROPOS_GMM_POSTERIORS2: cd $(WORKDIR)/36-13-0916;c3d 36-13-0916_pre_ATROPOS_GMM_POSTERIORS2.nii.gz 36-13-0916_labels.nii.gz -lstat > 36-13-0916_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/36-13-0916;sed -i "1,2d" 36-13-0916_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/36-13-0916;sed "s/\s\+/,/g" 36-13-0916_pre_ATROPOS_GMM_POSTERIORS2.txt > 36-13-0916_pre_ATROPOS_GMM_POSTERIORS2.csv cd $(WORKDIR)/36-13-0916;sed -i "s/^/36-13-0916_pre_ATROPOS_GMM_POSTERIORS2,/" 36-13-0916_pre_ATROPOS_GMM_POSTERIORS2.csv job_36-13-0916_wCSV_pre_ATROPOS_GMM_POSTERIORS3: cd $(WORKDIR)/36-13-0916;c3d 36-13-0916_pre_ATROPOS_GMM_POSTERIORS3.nii.gz 36-13-0916_labels.nii.gz -lstat > 36-13-0916_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/36-13-0916;sed -i "1,2d" 36-13-0916_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/36-13-0916;sed "s/\s\+/,/g" 36-13-0916_pre_ATROPOS_GMM_POSTERIORS3.txt > 36-13-0916_pre_ATROPOS_GMM_POSTERIORS3.csv cd $(WORKDIR)/36-13-0916;sed -i "s/^/36-13-0916_pre_ATROPOS_GMM_POSTERIORS3,/" 36-13-0916_pre_ATROPOS_GMM_POSTERIORS3.csv job_36-13-0916_wCSV_pre_ATROPOS_GMM_POSTERIORS4: cd $(WORKDIR)/36-13-0916;c3d 36-13-0916_pre_ATROPOS_GMM_POSTERIORS4.nii.gz 36-13-0916_labels.nii.gz -lstat > 36-13-0916_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/36-13-0916;sed -i "1,2d" 36-13-0916_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/36-13-0916;sed "s/\s\+/,/g" 36-13-0916_pre_ATROPOS_GMM_POSTERIORS4.txt > 36-13-0916_pre_ATROPOS_GMM_POSTERIORS4.csv cd $(WORKDIR)/36-13-0916;sed -i "s/^/36-13-0916_pre_ATROPOS_GMM_POSTERIORS4,/" 36-13-0916_pre_ATROPOS_GMM_POSTERIORS4.csv job_36-13-0916_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO: cd $(WORKDIR)/36-13-0916;c3d 36-13-0916_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.nii.gz 36-13-0916_labels.nii.gz -lstat > 36-13-0916_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/36-13-0916;sed -i "1,2d" 36-13-0916_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/36-13-0916;sed "s/\s\+/,/g" 36-13-0916_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt > 36-13-0916_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv cd $(WORKDIR)/36-13-0916;sed -i "s/^/36-13-0916_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO,/" 36-13-0916_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv job_36-13-0916_wCSV_pre_ENTROPY_RADIUS_1: cd $(WORKDIR)/36-13-0916;c3d 36-13-0916_pre_ENTROPY_RADIUS_1.nii.gz 36-13-0916_labels.nii.gz -lstat > 36-13-0916_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/36-13-0916;sed -i "1,2d" 36-13-0916_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/36-13-0916;sed "s/\s\+/,/g" 36-13-0916_pre_ENTROPY_RADIUS_1.txt > 36-13-0916_pre_ENTROPY_RADIUS_1.csv cd $(WORKDIR)/36-13-0916;sed -i "s/^/36-13-0916_pre_ENTROPY_RADIUS_1,/" 36-13-0916_pre_ENTROPY_RADIUS_1.csv job_36-13-0916_wCSV_pre_ENTROPY_RADIUS_3: cd $(WORKDIR)/36-13-0916;c3d 36-13-0916_pre_ENTROPY_RADIUS_3.nii.gz 36-13-0916_labels.nii.gz -lstat > 36-13-0916_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/36-13-0916;sed -i "1,2d" 36-13-0916_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/36-13-0916;sed "s/\s\+/,/g" 36-13-0916_pre_ENTROPY_RADIUS_3.txt > 36-13-0916_pre_ENTROPY_RADIUS_3.csv cd $(WORKDIR)/36-13-0916;sed -i "s/^/36-13-0916_pre_ENTROPY_RADIUS_3,/" 36-13-0916_pre_ENTROPY_RADIUS_3.csv job_36-13-0916_wCSV_pre_MEAN_RADIUS_1: cd $(WORKDIR)/36-13-0916;c3d 36-13-0916_pre_MEAN_RADIUS_1.nii.gz 36-13-0916_labels.nii.gz -lstat > 36-13-0916_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/36-13-0916;sed -i "1,2d" 36-13-0916_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/36-13-0916;sed "s/\s\+/,/g" 36-13-0916_pre_MEAN_RADIUS_1.txt > 36-13-0916_pre_MEAN_RADIUS_1.csv cd $(WORKDIR)/36-13-0916;sed -i "s/^/36-13-0916_pre_MEAN_RADIUS_1,/" 36-13-0916_pre_MEAN_RADIUS_1.csv job_36-13-0916_wCSV_pre_MEAN_RADIUS_3: cd $(WORKDIR)/36-13-0916;c3d 36-13-0916_pre_MEAN_RADIUS_3.nii.gz 36-13-0916_labels.nii.gz -lstat > 36-13-0916_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/36-13-0916;sed -i "1,2d" 36-13-0916_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/36-13-0916;sed "s/\s\+/,/g" 36-13-0916_pre_MEAN_RADIUS_3.txt > 36-13-0916_pre_MEAN_RADIUS_3.csv cd $(WORKDIR)/36-13-0916;sed -i "s/^/36-13-0916_pre_MEAN_RADIUS_3,/" 36-13-0916_pre_MEAN_RADIUS_3.csv job_36-13-0916_wCSV_pre_NORMALIZED: cd $(WORKDIR)/36-13-0916;c3d 36-13-0916_pre_NORMALIZED.nii.gz 36-13-0916_labels.nii.gz -lstat > 36-13-0916_pre_NORMALIZED.txt cd $(WORKDIR)/36-13-0916;sed -i "1,2d" 36-13-0916_pre_NORMALIZED.txt cd $(WORKDIR)/36-13-0916;sed "s/\s\+/,/g" 36-13-0916_pre_NORMALIZED.txt > 36-13-0916_pre_NORMALIZED.csv cd $(WORKDIR)/36-13-0916;sed -i "s/^/36-13-0916_pre_NORMALIZED,/" 36-13-0916_pre_NORMALIZED.csv job_36-13-0916_wCSV_pre_SIGMA_RADIUS_1: cd $(WORKDIR)/36-13-0916;c3d 36-13-0916_pre_SIGMA_RADIUS_1.nii.gz 36-13-0916_labels.nii.gz -lstat > 36-13-0916_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/36-13-0916;sed -i "1,2d" 36-13-0916_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/36-13-0916;sed "s/\s\+/,/g" 36-13-0916_pre_SIGMA_RADIUS_1.txt > 36-13-0916_pre_SIGMA_RADIUS_1.csv cd $(WORKDIR)/36-13-0916;sed -i "s/^/36-13-0916_pre_SIGMA_RADIUS_1,/" 36-13-0916_pre_SIGMA_RADIUS_1.csv job_36-13-0916_wCSV_pre_SIGMA_RADIUS_3: cd $(WORKDIR)/36-13-0916;c3d 36-13-0916_pre_SIGMA_RADIUS_3.nii.gz 36-13-0916_labels.nii.gz -lstat > 36-13-0916_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/36-13-0916;sed -i "1,2d" 36-13-0916_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/36-13-0916;sed "s/\s\+/,/g" 36-13-0916_pre_SIGMA_RADIUS_3.txt > 36-13-0916_pre_SIGMA_RADIUS_3.csv cd $(WORKDIR)/36-13-0916;sed -i "s/^/36-13-0916_pre_SIGMA_RADIUS_3,/" 36-13-0916_pre_SIGMA_RADIUS_3.csv job_36-13-0916_wCSV_pre_SKEWNESS_RADIUS_1: cd $(WORKDIR)/36-13-0916;c3d 36-13-0916_pre_SKEWNESS_RADIUS_1.nii.gz 36-13-0916_labels.nii.gz -lstat > 36-13-0916_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/36-13-0916;sed -i "1,2d" 36-13-0916_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/36-13-0916;sed "s/\s\+/,/g" 36-13-0916_pre_SKEWNESS_RADIUS_1.txt > 36-13-0916_pre_SKEWNESS_RADIUS_1.csv cd $(WORKDIR)/36-13-0916;sed -i "s/^/36-13-0916_pre_SKEWNESS_RADIUS_1,/" 36-13-0916_pre_SKEWNESS_RADIUS_1.csv job_36-13-0916_wCSV_pre_SKEWNESS_RADIUS_3: cd $(WORKDIR)/36-13-0916;c3d 36-13-0916_pre_SKEWNESS_RADIUS_3.nii.gz 36-13-0916_labels.nii.gz -lstat > 36-13-0916_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/36-13-0916;sed -i "1,2d" 36-13-0916_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/36-13-0916;sed "s/\s\+/,/g" 36-13-0916_pre_SKEWNESS_RADIUS_3.txt > 36-13-0916_pre_SKEWNESS_RADIUS_3.csv cd $(WORKDIR)/36-13-0916;sed -i "s/^/36-13-0916_pre_SKEWNESS_RADIUS_3,/" 36-13-0916_pre_SKEWNESS_RADIUS_3.csv job_36-13-0916_wCSV_pre__DIFFERENCE: cd $(WORKDIR)/36-13-0916;c3d 36-13-0916_pre__DIFFERENCE.nii.gz 36-13-0916_labels.nii.gz -lstat > 36-13-0916_pre__DIFFERENCE.txt cd $(WORKDIR)/36-13-0916;sed -i "1,2d" 36-13-0916_pre__DIFFERENCE.txt cd $(WORKDIR)/36-13-0916;sed "s/\s\+/,/g" 36-13-0916_pre__DIFFERENCE.txt > 36-13-0916_pre__DIFFERENCE.csv cd $(WORKDIR)/36-13-0916;sed -i "s/^/36-13-0916_pre__DIFFERENCE,/" 36-13-0916_pre__DIFFERENCE.csv job_37-13-0920_crFI: cd $(WORKDIR)/37-13-0920;c3d 37-13-0920_grey.nii.gz 37-13-0920_labels.nii.gz -copy-transform -o 37-13-0920_labels.nii.gz cd $(WORKDIR)/37-13-0920;c3d 37-13-0920_grey.nii.gz -orient RAI -o 37-13-0920_grey.nii.gz cd $(WORKDIR)/37-13-0920;c3d 37-13-0920_labels.nii.gz -orient RAI -o 37-13-0920_labels.nii.gz cd $(WORKDIR)/37-13-0920;c3d 37-13-0920_labels.nii.gz -binarize -o 37-13-0920_mask.nii.gz cd $(WORKDIR)/37-13-0920;../createFeatureImagesOvary.sh -d 3 -x 37-13-0920_mask.nii.gz -l3 -n pre -a 37-13-0920_grey.nii.gz -f 0x2 -o ./37-13-0920_ -r 1 -r 3 -s 2 -b 4 job_37-13-0920_wCSV_NORMALIZED_DISTANCE: cd $(WORKDIR)/37-13-0920;c3d 37-13-0920_NORMALIZED_DISTANCE.nii.gz 37-13-0920_labels.nii.gz -lstat > 37-13-0920_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/37-13-0920;sed -i "1,2d" 37-13-0920_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/37-13-0920;sed "s/\s\+/,/g" 37-13-0920_NORMALIZED_DISTANCE.txt > 37-13-0920_NORMALIZED_DISTANCE.csv cd $(WORKDIR)/37-13-0920;sed -i "s/^/37-13-0920_NORMALIZED_DISTANCE,/" 37-13-0920_NORMALIZED_DISTANCE.csv job_37-13-0920_wCSV_pre_ATROPOS_GMM: cd $(WORKDIR)/37-13-0920;c3d 37-13-0920_pre_ATROPOS_GMM.nii.gz 37-13-0920_labels.nii.gz -lstat > 37-13-0920_pre_ATROPOS_GMM.txt cd $(WORKDIR)/37-13-0920;sed -i "1,2d" 37-13-0920_pre_ATROPOS_GMM.txt cd $(WORKDIR)/37-13-0920;sed "s/\s\+/,/g" 37-13-0920_pre_ATROPOS_GMM.txt > 37-13-0920_pre_ATROPOS_GMM.csv cd $(WORKDIR)/37-13-0920;sed -i "s/^/37-13-0920_pre_ATROPOS_GMM,/" 37-13-0920_pre_ATROPOS_GMM.csv job_37-13-0920_wCSV_pre_ATROPOS_GMM_ECCENTRICITY: cd $(WORKDIR)/37-13-0920;c3d 37-13-0920_pre_ATROPOS_GMM_ECCENTRICITY.nii.gz 37-13-0920_labels.nii.gz -lstat > 37-13-0920_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/37-13-0920;sed -i "1,2d" 37-13-0920_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/37-13-0920;sed "s/\s\+/,/g" 37-13-0920_pre_ATROPOS_GMM_ECCENTRICITY.txt > 37-13-0920_pre_ATROPOS_GMM_ECCENTRICITY.csv cd $(WORKDIR)/37-13-0920;sed -i "s/^/37-13-0920_pre_ATROPOS_GMM_ECCENTRICITY,/" 37-13-0920_pre_ATROPOS_GMM_ECCENTRICITY.csv job_37-13-0920_wCSV_pre_ATROPOS_GMM_ELONGATION: cd $(WORKDIR)/37-13-0920;c3d 37-13-0920_pre_ATROPOS_GMM_ELONGATION.nii.gz 37-13-0920_labels.nii.gz -lstat > 37-13-0920_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/37-13-0920;sed -i "1,2d" 37-13-0920_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/37-13-0920;sed "s/\s\+/,/g" 37-13-0920_pre_ATROPOS_GMM_ELONGATION.txt > 37-13-0920_pre_ATROPOS_GMM_ELONGATION.csv cd $(WORKDIR)/37-13-0920;sed -i "s/^/37-13-0920_pre_ATROPOS_GMM_ELONGATION,/" 37-13-0920_pre_ATROPOS_GMM_ELONGATION.csv job_37-13-0920_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE: cd $(WORKDIR)/37-13-0920;c3d 37-13-0920_pre_ATROPOS_GMM_LABEL3_DISTANCE.nii.gz 37-13-0920_labels.nii.gz -lstat > 37-13-0920_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/37-13-0920;sed -i "1,2d" 37-13-0920_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/37-13-0920;sed "s/\s\+/,/g" 37-13-0920_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt > 37-13-0920_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv cd $(WORKDIR)/37-13-0920;sed -i "s/^/37-13-0920_pre_ATROPOS_GMM_LABEL3_DISTANCE,/" 37-13-0920_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv job_37-13-0920_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME: cd $(WORKDIR)/37-13-0920;c3d 37-13-0920_pre_ATROPOS_GMM_PHYSICAL_VOLUME.nii.gz 37-13-0920_labels.nii.gz -lstat > 37-13-0920_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/37-13-0920;sed -i "1,2d" 37-13-0920_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/37-13-0920;sed "s/\s\+/,/g" 37-13-0920_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt > 37-13-0920_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv cd $(WORKDIR)/37-13-0920;sed -i "s/^/37-13-0920_pre_ATROPOS_GMM_PHYSICAL_VOLUME,/" 37-13-0920_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv job_37-13-0920_wCSV_pre_ATROPOS_GMM_POSTERIORS1: cd $(WORKDIR)/37-13-0920;c3d 37-13-0920_pre_ATROPOS_GMM_POSTERIORS1.nii.gz 37-13-0920_labels.nii.gz -lstat > 37-13-0920_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/37-13-0920;sed -i "1,2d" 37-13-0920_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/37-13-0920;sed "s/\s\+/,/g" 37-13-0920_pre_ATROPOS_GMM_POSTERIORS1.txt > 37-13-0920_pre_ATROPOS_GMM_POSTERIORS1.csv cd $(WORKDIR)/37-13-0920;sed -i "s/^/37-13-0920_pre_ATROPOS_GMM_POSTERIORS1,/" 37-13-0920_pre_ATROPOS_GMM_POSTERIORS1.csv job_37-13-0920_wCSV_pre_ATROPOS_GMM_POSTERIORS2: cd $(WORKDIR)/37-13-0920;c3d 37-13-0920_pre_ATROPOS_GMM_POSTERIORS2.nii.gz 37-13-0920_labels.nii.gz -lstat > 37-13-0920_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/37-13-0920;sed -i "1,2d" 37-13-0920_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/37-13-0920;sed "s/\s\+/,/g" 37-13-0920_pre_ATROPOS_GMM_POSTERIORS2.txt > 37-13-0920_pre_ATROPOS_GMM_POSTERIORS2.csv cd $(WORKDIR)/37-13-0920;sed -i "s/^/37-13-0920_pre_ATROPOS_GMM_POSTERIORS2,/" 37-13-0920_pre_ATROPOS_GMM_POSTERIORS2.csv job_37-13-0920_wCSV_pre_ATROPOS_GMM_POSTERIORS3: cd $(WORKDIR)/37-13-0920;c3d 37-13-0920_pre_ATROPOS_GMM_POSTERIORS3.nii.gz 37-13-0920_labels.nii.gz -lstat > 37-13-0920_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/37-13-0920;sed -i "1,2d" 37-13-0920_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/37-13-0920;sed "s/\s\+/,/g" 37-13-0920_pre_ATROPOS_GMM_POSTERIORS3.txt > 37-13-0920_pre_ATROPOS_GMM_POSTERIORS3.csv cd $(WORKDIR)/37-13-0920;sed -i "s/^/37-13-0920_pre_ATROPOS_GMM_POSTERIORS3,/" 37-13-0920_pre_ATROPOS_GMM_POSTERIORS3.csv job_37-13-0920_wCSV_pre_ATROPOS_GMM_POSTERIORS4: cd $(WORKDIR)/37-13-0920;c3d 37-13-0920_pre_ATROPOS_GMM_POSTERIORS4.nii.gz 37-13-0920_labels.nii.gz -lstat > 37-13-0920_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/37-13-0920;sed -i "1,2d" 37-13-0920_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/37-13-0920;sed "s/\s\+/,/g" 37-13-0920_pre_ATROPOS_GMM_POSTERIORS4.txt > 37-13-0920_pre_ATROPOS_GMM_POSTERIORS4.csv cd $(WORKDIR)/37-13-0920;sed -i "s/^/37-13-0920_pre_ATROPOS_GMM_POSTERIORS4,/" 37-13-0920_pre_ATROPOS_GMM_POSTERIORS4.csv job_37-13-0920_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO: cd $(WORKDIR)/37-13-0920;c3d 37-13-0920_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.nii.gz 37-13-0920_labels.nii.gz -lstat > 37-13-0920_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/37-13-0920;sed -i "1,2d" 37-13-0920_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/37-13-0920;sed "s/\s\+/,/g" 37-13-0920_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt > 37-13-0920_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv cd $(WORKDIR)/37-13-0920;sed -i "s/^/37-13-0920_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO,/" 37-13-0920_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv job_37-13-0920_wCSV_pre_ENTROPY_RADIUS_1: cd $(WORKDIR)/37-13-0920;c3d 37-13-0920_pre_ENTROPY_RADIUS_1.nii.gz 37-13-0920_labels.nii.gz -lstat > 37-13-0920_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/37-13-0920;sed -i "1,2d" 37-13-0920_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/37-13-0920;sed "s/\s\+/,/g" 37-13-0920_pre_ENTROPY_RADIUS_1.txt > 37-13-0920_pre_ENTROPY_RADIUS_1.csv cd $(WORKDIR)/37-13-0920;sed -i "s/^/37-13-0920_pre_ENTROPY_RADIUS_1,/" 37-13-0920_pre_ENTROPY_RADIUS_1.csv job_37-13-0920_wCSV_pre_ENTROPY_RADIUS_3: cd $(WORKDIR)/37-13-0920;c3d 37-13-0920_pre_ENTROPY_RADIUS_3.nii.gz 37-13-0920_labels.nii.gz -lstat > 37-13-0920_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/37-13-0920;sed -i "1,2d" 37-13-0920_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/37-13-0920;sed "s/\s\+/,/g" 37-13-0920_pre_ENTROPY_RADIUS_3.txt > 37-13-0920_pre_ENTROPY_RADIUS_3.csv cd $(WORKDIR)/37-13-0920;sed -i "s/^/37-13-0920_pre_ENTROPY_RADIUS_3,/" 37-13-0920_pre_ENTROPY_RADIUS_3.csv job_37-13-0920_wCSV_pre_MEAN_RADIUS_1: cd $(WORKDIR)/37-13-0920;c3d 37-13-0920_pre_MEAN_RADIUS_1.nii.gz 37-13-0920_labels.nii.gz -lstat > 37-13-0920_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/37-13-0920;sed -i "1,2d" 37-13-0920_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/37-13-0920;sed "s/\s\+/,/g" 37-13-0920_pre_MEAN_RADIUS_1.txt > 37-13-0920_pre_MEAN_RADIUS_1.csv cd $(WORKDIR)/37-13-0920;sed -i "s/^/37-13-0920_pre_MEAN_RADIUS_1,/" 37-13-0920_pre_MEAN_RADIUS_1.csv job_37-13-0920_wCSV_pre_MEAN_RADIUS_3: cd $(WORKDIR)/37-13-0920;c3d 37-13-0920_pre_MEAN_RADIUS_3.nii.gz 37-13-0920_labels.nii.gz -lstat > 37-13-0920_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/37-13-0920;sed -i "1,2d" 37-13-0920_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/37-13-0920;sed "s/\s\+/,/g" 37-13-0920_pre_MEAN_RADIUS_3.txt > 37-13-0920_pre_MEAN_RADIUS_3.csv cd $(WORKDIR)/37-13-0920;sed -i "s/^/37-13-0920_pre_MEAN_RADIUS_3,/" 37-13-0920_pre_MEAN_RADIUS_3.csv job_37-13-0920_wCSV_pre_NORMALIZED: cd $(WORKDIR)/37-13-0920;c3d 37-13-0920_pre_NORMALIZED.nii.gz 37-13-0920_labels.nii.gz -lstat > 37-13-0920_pre_NORMALIZED.txt cd $(WORKDIR)/37-13-0920;sed -i "1,2d" 37-13-0920_pre_NORMALIZED.txt cd $(WORKDIR)/37-13-0920;sed "s/\s\+/,/g" 37-13-0920_pre_NORMALIZED.txt > 37-13-0920_pre_NORMALIZED.csv cd $(WORKDIR)/37-13-0920;sed -i "s/^/37-13-0920_pre_NORMALIZED,/" 37-13-0920_pre_NORMALIZED.csv job_37-13-0920_wCSV_pre_SIGMA_RADIUS_1: cd $(WORKDIR)/37-13-0920;c3d 37-13-0920_pre_SIGMA_RADIUS_1.nii.gz 37-13-0920_labels.nii.gz -lstat > 37-13-0920_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/37-13-0920;sed -i "1,2d" 37-13-0920_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/37-13-0920;sed "s/\s\+/,/g" 37-13-0920_pre_SIGMA_RADIUS_1.txt > 37-13-0920_pre_SIGMA_RADIUS_1.csv cd $(WORKDIR)/37-13-0920;sed -i "s/^/37-13-0920_pre_SIGMA_RADIUS_1,/" 37-13-0920_pre_SIGMA_RADIUS_1.csv job_37-13-0920_wCSV_pre_SIGMA_RADIUS_3: cd $(WORKDIR)/37-13-0920;c3d 37-13-0920_pre_SIGMA_RADIUS_3.nii.gz 37-13-0920_labels.nii.gz -lstat > 37-13-0920_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/37-13-0920;sed -i "1,2d" 37-13-0920_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/37-13-0920;sed "s/\s\+/,/g" 37-13-0920_pre_SIGMA_RADIUS_3.txt > 37-13-0920_pre_SIGMA_RADIUS_3.csv cd $(WORKDIR)/37-13-0920;sed -i "s/^/37-13-0920_pre_SIGMA_RADIUS_3,/" 37-13-0920_pre_SIGMA_RADIUS_3.csv job_37-13-0920_wCSV_pre_SKEWNESS_RADIUS_1: cd $(WORKDIR)/37-13-0920;c3d 37-13-0920_pre_SKEWNESS_RADIUS_1.nii.gz 37-13-0920_labels.nii.gz -lstat > 37-13-0920_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/37-13-0920;sed -i "1,2d" 37-13-0920_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/37-13-0920;sed "s/\s\+/,/g" 37-13-0920_pre_SKEWNESS_RADIUS_1.txt > 37-13-0920_pre_SKEWNESS_RADIUS_1.csv cd $(WORKDIR)/37-13-0920;sed -i "s/^/37-13-0920_pre_SKEWNESS_RADIUS_1,/" 37-13-0920_pre_SKEWNESS_RADIUS_1.csv job_37-13-0920_wCSV_pre_SKEWNESS_RADIUS_3: cd $(WORKDIR)/37-13-0920;c3d 37-13-0920_pre_SKEWNESS_RADIUS_3.nii.gz 37-13-0920_labels.nii.gz -lstat > 37-13-0920_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/37-13-0920;sed -i "1,2d" 37-13-0920_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/37-13-0920;sed "s/\s\+/,/g" 37-13-0920_pre_SKEWNESS_RADIUS_3.txt > 37-13-0920_pre_SKEWNESS_RADIUS_3.csv cd $(WORKDIR)/37-13-0920;sed -i "s/^/37-13-0920_pre_SKEWNESS_RADIUS_3,/" 37-13-0920_pre_SKEWNESS_RADIUS_3.csv job_37-13-0920_wCSV_pre__DIFFERENCE: cd $(WORKDIR)/37-13-0920;c3d 37-13-0920_pre__DIFFERENCE.nii.gz 37-13-0920_labels.nii.gz -lstat > 37-13-0920_pre__DIFFERENCE.txt cd $(WORKDIR)/37-13-0920;sed -i "1,2d" 37-13-0920_pre__DIFFERENCE.txt cd $(WORKDIR)/37-13-0920;sed "s/\s\+/,/g" 37-13-0920_pre__DIFFERENCE.txt > 37-13-0920_pre__DIFFERENCE.csv cd $(WORKDIR)/37-13-0920;sed -i "s/^/37-13-0920_pre__DIFFERENCE,/" 37-13-0920_pre__DIFFERENCE.csv job_38-13-0921_crFI: cd $(WORKDIR)/38-13-0921;c3d 38-13-0921_grey.nii.gz 38-13-0921_labels.nii.gz -copy-transform -o 38-13-0921_labels.nii.gz cd $(WORKDIR)/38-13-0921;c3d 38-13-0921_grey.nii.gz -orient RAI -o 38-13-0921_grey.nii.gz cd $(WORKDIR)/38-13-0921;c3d 38-13-0921_labels.nii.gz -orient RAI -o 38-13-0921_labels.nii.gz cd $(WORKDIR)/38-13-0921;c3d 38-13-0921_labels.nii.gz -binarize -o 38-13-0921_mask.nii.gz cd $(WORKDIR)/38-13-0921;../createFeatureImagesOvary.sh -d 3 -x 38-13-0921_mask.nii.gz -l3 -n pre -a 38-13-0921_grey.nii.gz -f 0x2 -o ./38-13-0921_ -r 1 -r 3 -s 2 -b 4 job_38-13-0921_wCSV_NORMALIZED_DISTANCE: cd $(WORKDIR)/38-13-0921;c3d 38-13-0921_NORMALIZED_DISTANCE.nii.gz 38-13-0921_labels.nii.gz -lstat > 38-13-0921_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/38-13-0921;sed -i "1,2d" 38-13-0921_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/38-13-0921;sed "s/\s\+/,/g" 38-13-0921_NORMALIZED_DISTANCE.txt > 38-13-0921_NORMALIZED_DISTANCE.csv cd $(WORKDIR)/38-13-0921;sed -i "s/^/38-13-0921_NORMALIZED_DISTANCE,/" 38-13-0921_NORMALIZED_DISTANCE.csv job_38-13-0921_wCSV_pre_ATROPOS_GMM: cd $(WORKDIR)/38-13-0921;c3d 38-13-0921_pre_ATROPOS_GMM.nii.gz 38-13-0921_labels.nii.gz -lstat > 38-13-0921_pre_ATROPOS_GMM.txt cd $(WORKDIR)/38-13-0921;sed -i "1,2d" 38-13-0921_pre_ATROPOS_GMM.txt cd $(WORKDIR)/38-13-0921;sed "s/\s\+/,/g" 38-13-0921_pre_ATROPOS_GMM.txt > 38-13-0921_pre_ATROPOS_GMM.csv cd $(WORKDIR)/38-13-0921;sed -i "s/^/38-13-0921_pre_ATROPOS_GMM,/" 38-13-0921_pre_ATROPOS_GMM.csv job_38-13-0921_wCSV_pre_ATROPOS_GMM_ECCENTRICITY: cd $(WORKDIR)/38-13-0921;c3d 38-13-0921_pre_ATROPOS_GMM_ECCENTRICITY.nii.gz 38-13-0921_labels.nii.gz -lstat > 38-13-0921_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/38-13-0921;sed -i "1,2d" 38-13-0921_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/38-13-0921;sed "s/\s\+/,/g" 38-13-0921_pre_ATROPOS_GMM_ECCENTRICITY.txt > 38-13-0921_pre_ATROPOS_GMM_ECCENTRICITY.csv cd $(WORKDIR)/38-13-0921;sed -i "s/^/38-13-0921_pre_ATROPOS_GMM_ECCENTRICITY,/" 38-13-0921_pre_ATROPOS_GMM_ECCENTRICITY.csv job_38-13-0921_wCSV_pre_ATROPOS_GMM_ELONGATION: cd $(WORKDIR)/38-13-0921;c3d 38-13-0921_pre_ATROPOS_GMM_ELONGATION.nii.gz 38-13-0921_labels.nii.gz -lstat > 38-13-0921_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/38-13-0921;sed -i "1,2d" 38-13-0921_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/38-13-0921;sed "s/\s\+/,/g" 38-13-0921_pre_ATROPOS_GMM_ELONGATION.txt > 38-13-0921_pre_ATROPOS_GMM_ELONGATION.csv cd $(WORKDIR)/38-13-0921;sed -i "s/^/38-13-0921_pre_ATROPOS_GMM_ELONGATION,/" 38-13-0921_pre_ATROPOS_GMM_ELONGATION.csv job_38-13-0921_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE: cd $(WORKDIR)/38-13-0921;c3d 38-13-0921_pre_ATROPOS_GMM_LABEL3_DISTANCE.nii.gz 38-13-0921_labels.nii.gz -lstat > 38-13-0921_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/38-13-0921;sed -i "1,2d" 38-13-0921_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/38-13-0921;sed "s/\s\+/,/g" 38-13-0921_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt > 38-13-0921_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv cd $(WORKDIR)/38-13-0921;sed -i "s/^/38-13-0921_pre_ATROPOS_GMM_LABEL3_DISTANCE,/" 38-13-0921_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv job_38-13-0921_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME: cd $(WORKDIR)/38-13-0921;c3d 38-13-0921_pre_ATROPOS_GMM_PHYSICAL_VOLUME.nii.gz 38-13-0921_labels.nii.gz -lstat > 38-13-0921_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/38-13-0921;sed -i "1,2d" 38-13-0921_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/38-13-0921;sed "s/\s\+/,/g" 38-13-0921_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt > 38-13-0921_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv cd $(WORKDIR)/38-13-0921;sed -i "s/^/38-13-0921_pre_ATROPOS_GMM_PHYSICAL_VOLUME,/" 38-13-0921_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv job_38-13-0921_wCSV_pre_ATROPOS_GMM_POSTERIORS1: cd $(WORKDIR)/38-13-0921;c3d 38-13-0921_pre_ATROPOS_GMM_POSTERIORS1.nii.gz 38-13-0921_labels.nii.gz -lstat > 38-13-0921_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/38-13-0921;sed -i "1,2d" 38-13-0921_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/38-13-0921;sed "s/\s\+/,/g" 38-13-0921_pre_ATROPOS_GMM_POSTERIORS1.txt > 38-13-0921_pre_ATROPOS_GMM_POSTERIORS1.csv cd $(WORKDIR)/38-13-0921;sed -i "s/^/38-13-0921_pre_ATROPOS_GMM_POSTERIORS1,/" 38-13-0921_pre_ATROPOS_GMM_POSTERIORS1.csv job_38-13-0921_wCSV_pre_ATROPOS_GMM_POSTERIORS2: cd $(WORKDIR)/38-13-0921;c3d 38-13-0921_pre_ATROPOS_GMM_POSTERIORS2.nii.gz 38-13-0921_labels.nii.gz -lstat > 38-13-0921_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/38-13-0921;sed -i "1,2d" 38-13-0921_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/38-13-0921;sed "s/\s\+/,/g" 38-13-0921_pre_ATROPOS_GMM_POSTERIORS2.txt > 38-13-0921_pre_ATROPOS_GMM_POSTERIORS2.csv cd $(WORKDIR)/38-13-0921;sed -i "s/^/38-13-0921_pre_ATROPOS_GMM_POSTERIORS2,/" 38-13-0921_pre_ATROPOS_GMM_POSTERIORS2.csv job_38-13-0921_wCSV_pre_ATROPOS_GMM_POSTERIORS3: cd $(WORKDIR)/38-13-0921;c3d 38-13-0921_pre_ATROPOS_GMM_POSTERIORS3.nii.gz 38-13-0921_labels.nii.gz -lstat > 38-13-0921_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/38-13-0921;sed -i "1,2d" 38-13-0921_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/38-13-0921;sed "s/\s\+/,/g" 38-13-0921_pre_ATROPOS_GMM_POSTERIORS3.txt > 38-13-0921_pre_ATROPOS_GMM_POSTERIORS3.csv cd $(WORKDIR)/38-13-0921;sed -i "s/^/38-13-0921_pre_ATROPOS_GMM_POSTERIORS3,/" 38-13-0921_pre_ATROPOS_GMM_POSTERIORS3.csv job_38-13-0921_wCSV_pre_ATROPOS_GMM_POSTERIORS4: cd $(WORKDIR)/38-13-0921;c3d 38-13-0921_pre_ATROPOS_GMM_POSTERIORS4.nii.gz 38-13-0921_labels.nii.gz -lstat > 38-13-0921_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/38-13-0921;sed -i "1,2d" 38-13-0921_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/38-13-0921;sed "s/\s\+/,/g" 38-13-0921_pre_ATROPOS_GMM_POSTERIORS4.txt > 38-13-0921_pre_ATROPOS_GMM_POSTERIORS4.csv cd $(WORKDIR)/38-13-0921;sed -i "s/^/38-13-0921_pre_ATROPOS_GMM_POSTERIORS4,/" 38-13-0921_pre_ATROPOS_GMM_POSTERIORS4.csv job_38-13-0921_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO: cd $(WORKDIR)/38-13-0921;c3d 38-13-0921_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.nii.gz 38-13-0921_labels.nii.gz -lstat > 38-13-0921_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/38-13-0921;sed -i "1,2d" 38-13-0921_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/38-13-0921;sed "s/\s\+/,/g" 38-13-0921_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt > 38-13-0921_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv cd $(WORKDIR)/38-13-0921;sed -i "s/^/38-13-0921_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO,/" 38-13-0921_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv job_38-13-0921_wCSV_pre_ENTROPY_RADIUS_1: cd $(WORKDIR)/38-13-0921;c3d 38-13-0921_pre_ENTROPY_RADIUS_1.nii.gz 38-13-0921_labels.nii.gz -lstat > 38-13-0921_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/38-13-0921;sed -i "1,2d" 38-13-0921_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/38-13-0921;sed "s/\s\+/,/g" 38-13-0921_pre_ENTROPY_RADIUS_1.txt > 38-13-0921_pre_ENTROPY_RADIUS_1.csv cd $(WORKDIR)/38-13-0921;sed -i "s/^/38-13-0921_pre_ENTROPY_RADIUS_1,/" 38-13-0921_pre_ENTROPY_RADIUS_1.csv job_38-13-0921_wCSV_pre_ENTROPY_RADIUS_3: cd $(WORKDIR)/38-13-0921;c3d 38-13-0921_pre_ENTROPY_RADIUS_3.nii.gz 38-13-0921_labels.nii.gz -lstat > 38-13-0921_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/38-13-0921;sed -i "1,2d" 38-13-0921_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/38-13-0921;sed "s/\s\+/,/g" 38-13-0921_pre_ENTROPY_RADIUS_3.txt > 38-13-0921_pre_ENTROPY_RADIUS_3.csv cd $(WORKDIR)/38-13-0921;sed -i "s/^/38-13-0921_pre_ENTROPY_RADIUS_3,/" 38-13-0921_pre_ENTROPY_RADIUS_3.csv job_38-13-0921_wCSV_pre_MEAN_RADIUS_1: cd $(WORKDIR)/38-13-0921;c3d 38-13-0921_pre_MEAN_RADIUS_1.nii.gz 38-13-0921_labels.nii.gz -lstat > 38-13-0921_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/38-13-0921;sed -i "1,2d" 38-13-0921_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/38-13-0921;sed "s/\s\+/,/g" 38-13-0921_pre_MEAN_RADIUS_1.txt > 38-13-0921_pre_MEAN_RADIUS_1.csv cd $(WORKDIR)/38-13-0921;sed -i "s/^/38-13-0921_pre_MEAN_RADIUS_1,/" 38-13-0921_pre_MEAN_RADIUS_1.csv job_38-13-0921_wCSV_pre_MEAN_RADIUS_3: cd $(WORKDIR)/38-13-0921;c3d 38-13-0921_pre_MEAN_RADIUS_3.nii.gz 38-13-0921_labels.nii.gz -lstat > 38-13-0921_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/38-13-0921;sed -i "1,2d" 38-13-0921_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/38-13-0921;sed "s/\s\+/,/g" 38-13-0921_pre_MEAN_RADIUS_3.txt > 38-13-0921_pre_MEAN_RADIUS_3.csv cd $(WORKDIR)/38-13-0921;sed -i "s/^/38-13-0921_pre_MEAN_RADIUS_3,/" 38-13-0921_pre_MEAN_RADIUS_3.csv job_38-13-0921_wCSV_pre_NORMALIZED: cd $(WORKDIR)/38-13-0921;c3d 38-13-0921_pre_NORMALIZED.nii.gz 38-13-0921_labels.nii.gz -lstat > 38-13-0921_pre_NORMALIZED.txt cd $(WORKDIR)/38-13-0921;sed -i "1,2d" 38-13-0921_pre_NORMALIZED.txt cd $(WORKDIR)/38-13-0921;sed "s/\s\+/,/g" 38-13-0921_pre_NORMALIZED.txt > 38-13-0921_pre_NORMALIZED.csv cd $(WORKDIR)/38-13-0921;sed -i "s/^/38-13-0921_pre_NORMALIZED,/" 38-13-0921_pre_NORMALIZED.csv job_38-13-0921_wCSV_pre_SIGMA_RADIUS_1: cd $(WORKDIR)/38-13-0921;c3d 38-13-0921_pre_SIGMA_RADIUS_1.nii.gz 38-13-0921_labels.nii.gz -lstat > 38-13-0921_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/38-13-0921;sed -i "1,2d" 38-13-0921_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/38-13-0921;sed "s/\s\+/,/g" 38-13-0921_pre_SIGMA_RADIUS_1.txt > 38-13-0921_pre_SIGMA_RADIUS_1.csv cd $(WORKDIR)/38-13-0921;sed -i "s/^/38-13-0921_pre_SIGMA_RADIUS_1,/" 38-13-0921_pre_SIGMA_RADIUS_1.csv job_38-13-0921_wCSV_pre_SIGMA_RADIUS_3: cd $(WORKDIR)/38-13-0921;c3d 38-13-0921_pre_SIGMA_RADIUS_3.nii.gz 38-13-0921_labels.nii.gz -lstat > 38-13-0921_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/38-13-0921;sed -i "1,2d" 38-13-0921_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/38-13-0921;sed "s/\s\+/,/g" 38-13-0921_pre_SIGMA_RADIUS_3.txt > 38-13-0921_pre_SIGMA_RADIUS_3.csv cd $(WORKDIR)/38-13-0921;sed -i "s/^/38-13-0921_pre_SIGMA_RADIUS_3,/" 38-13-0921_pre_SIGMA_RADIUS_3.csv job_38-13-0921_wCSV_pre_SKEWNESS_RADIUS_1: cd $(WORKDIR)/38-13-0921;c3d 38-13-0921_pre_SKEWNESS_RADIUS_1.nii.gz 38-13-0921_labels.nii.gz -lstat > 38-13-0921_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/38-13-0921;sed -i "1,2d" 38-13-0921_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/38-13-0921;sed "s/\s\+/,/g" 38-13-0921_pre_SKEWNESS_RADIUS_1.txt > 38-13-0921_pre_SKEWNESS_RADIUS_1.csv cd $(WORKDIR)/38-13-0921;sed -i "s/^/38-13-0921_pre_SKEWNESS_RADIUS_1,/" 38-13-0921_pre_SKEWNESS_RADIUS_1.csv job_38-13-0921_wCSV_pre_SKEWNESS_RADIUS_3: cd $(WORKDIR)/38-13-0921;c3d 38-13-0921_pre_SKEWNESS_RADIUS_3.nii.gz 38-13-0921_labels.nii.gz -lstat > 38-13-0921_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/38-13-0921;sed -i "1,2d" 38-13-0921_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/38-13-0921;sed "s/\s\+/,/g" 38-13-0921_pre_SKEWNESS_RADIUS_3.txt > 38-13-0921_pre_SKEWNESS_RADIUS_3.csv cd $(WORKDIR)/38-13-0921;sed -i "s/^/38-13-0921_pre_SKEWNESS_RADIUS_3,/" 38-13-0921_pre_SKEWNESS_RADIUS_3.csv job_38-13-0921_wCSV_pre__DIFFERENCE: cd $(WORKDIR)/38-13-0921;c3d 38-13-0921_pre__DIFFERENCE.nii.gz 38-13-0921_labels.nii.gz -lstat > 38-13-0921_pre__DIFFERENCE.txt cd $(WORKDIR)/38-13-0921;sed -i "1,2d" 38-13-0921_pre__DIFFERENCE.txt cd $(WORKDIR)/38-13-0921;sed "s/\s\+/,/g" 38-13-0921_pre__DIFFERENCE.txt > 38-13-0921_pre__DIFFERENCE.csv cd $(WORKDIR)/38-13-0921;sed -i "s/^/38-13-0921_pre__DIFFERENCE,/" 38-13-0921_pre__DIFFERENCE.csv job_39-13-0924_crFI: cd $(WORKDIR)/39-13-0924;c3d 39-13-0924_grey.nii.gz 39-13-0924_labels.nii.gz -copy-transform -o 39-13-0924_labels.nii.gz cd $(WORKDIR)/39-13-0924;c3d 39-13-0924_grey.nii.gz -orient RAI -o 39-13-0924_grey.nii.gz cd $(WORKDIR)/39-13-0924;c3d 39-13-0924_labels.nii.gz -orient RAI -o 39-13-0924_labels.nii.gz cd $(WORKDIR)/39-13-0924;c3d 39-13-0924_labels.nii.gz -binarize -o 39-13-0924_mask.nii.gz cd $(WORKDIR)/39-13-0924;../createFeatureImagesOvary.sh -d 3 -x 39-13-0924_mask.nii.gz -l3 -n pre -a 39-13-0924_grey.nii.gz -f 0x2 -o ./39-13-0924_ -r 1 -r 3 -s 2 -b 4 job_39-13-0924_wCSV_NORMALIZED_DISTANCE: cd $(WORKDIR)/39-13-0924;c3d 39-13-0924_NORMALIZED_DISTANCE.nii.gz 39-13-0924_labels.nii.gz -lstat > 39-13-0924_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/39-13-0924;sed -i "1,2d" 39-13-0924_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/39-13-0924;sed "s/\s\+/,/g" 39-13-0924_NORMALIZED_DISTANCE.txt > 39-13-0924_NORMALIZED_DISTANCE.csv cd $(WORKDIR)/39-13-0924;sed -i "s/^/39-13-0924_NORMALIZED_DISTANCE,/" 39-13-0924_NORMALIZED_DISTANCE.csv job_39-13-0924_wCSV_pre_ATROPOS_GMM: cd $(WORKDIR)/39-13-0924;c3d 39-13-0924_pre_ATROPOS_GMM.nii.gz 39-13-0924_labels.nii.gz -lstat > 39-13-0924_pre_ATROPOS_GMM.txt cd $(WORKDIR)/39-13-0924;sed -i "1,2d" 39-13-0924_pre_ATROPOS_GMM.txt cd $(WORKDIR)/39-13-0924;sed "s/\s\+/,/g" 39-13-0924_pre_ATROPOS_GMM.txt > 39-13-0924_pre_ATROPOS_GMM.csv cd $(WORKDIR)/39-13-0924;sed -i "s/^/39-13-0924_pre_ATROPOS_GMM,/" 39-13-0924_pre_ATROPOS_GMM.csv job_39-13-0924_wCSV_pre_ATROPOS_GMM_ECCENTRICITY: cd $(WORKDIR)/39-13-0924;c3d 39-13-0924_pre_ATROPOS_GMM_ECCENTRICITY.nii.gz 39-13-0924_labels.nii.gz -lstat > 39-13-0924_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/39-13-0924;sed -i "1,2d" 39-13-0924_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/39-13-0924;sed "s/\s\+/,/g" 39-13-0924_pre_ATROPOS_GMM_ECCENTRICITY.txt > 39-13-0924_pre_ATROPOS_GMM_ECCENTRICITY.csv cd $(WORKDIR)/39-13-0924;sed -i "s/^/39-13-0924_pre_ATROPOS_GMM_ECCENTRICITY,/" 39-13-0924_pre_ATROPOS_GMM_ECCENTRICITY.csv job_39-13-0924_wCSV_pre_ATROPOS_GMM_ELONGATION: cd $(WORKDIR)/39-13-0924;c3d 39-13-0924_pre_ATROPOS_GMM_ELONGATION.nii.gz 39-13-0924_labels.nii.gz -lstat > 39-13-0924_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/39-13-0924;sed -i "1,2d" 39-13-0924_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/39-13-0924;sed "s/\s\+/,/g" 39-13-0924_pre_ATROPOS_GMM_ELONGATION.txt > 39-13-0924_pre_ATROPOS_GMM_ELONGATION.csv cd $(WORKDIR)/39-13-0924;sed -i "s/^/39-13-0924_pre_ATROPOS_GMM_ELONGATION,/" 39-13-0924_pre_ATROPOS_GMM_ELONGATION.csv job_39-13-0924_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE: cd $(WORKDIR)/39-13-0924;c3d 39-13-0924_pre_ATROPOS_GMM_LABEL3_DISTANCE.nii.gz 39-13-0924_labels.nii.gz -lstat > 39-13-0924_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/39-13-0924;sed -i "1,2d" 39-13-0924_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/39-13-0924;sed "s/\s\+/,/g" 39-13-0924_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt > 39-13-0924_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv cd $(WORKDIR)/39-13-0924;sed -i "s/^/39-13-0924_pre_ATROPOS_GMM_LABEL3_DISTANCE,/" 39-13-0924_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv job_39-13-0924_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME: cd $(WORKDIR)/39-13-0924;c3d 39-13-0924_pre_ATROPOS_GMM_PHYSICAL_VOLUME.nii.gz 39-13-0924_labels.nii.gz -lstat > 39-13-0924_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/39-13-0924;sed -i "1,2d" 39-13-0924_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/39-13-0924;sed "s/\s\+/,/g" 39-13-0924_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt > 39-13-0924_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv cd $(WORKDIR)/39-13-0924;sed -i "s/^/39-13-0924_pre_ATROPOS_GMM_PHYSICAL_VOLUME,/" 39-13-0924_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv job_39-13-0924_wCSV_pre_ATROPOS_GMM_POSTERIORS1: cd $(WORKDIR)/39-13-0924;c3d 39-13-0924_pre_ATROPOS_GMM_POSTERIORS1.nii.gz 39-13-0924_labels.nii.gz -lstat > 39-13-0924_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/39-13-0924;sed -i "1,2d" 39-13-0924_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/39-13-0924;sed "s/\s\+/,/g" 39-13-0924_pre_ATROPOS_GMM_POSTERIORS1.txt > 39-13-0924_pre_ATROPOS_GMM_POSTERIORS1.csv cd $(WORKDIR)/39-13-0924;sed -i "s/^/39-13-0924_pre_ATROPOS_GMM_POSTERIORS1,/" 39-13-0924_pre_ATROPOS_GMM_POSTERIORS1.csv job_39-13-0924_wCSV_pre_ATROPOS_GMM_POSTERIORS2: cd $(WORKDIR)/39-13-0924;c3d 39-13-0924_pre_ATROPOS_GMM_POSTERIORS2.nii.gz 39-13-0924_labels.nii.gz -lstat > 39-13-0924_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/39-13-0924;sed -i "1,2d" 39-13-0924_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/39-13-0924;sed "s/\s\+/,/g" 39-13-0924_pre_ATROPOS_GMM_POSTERIORS2.txt > 39-13-0924_pre_ATROPOS_GMM_POSTERIORS2.csv cd $(WORKDIR)/39-13-0924;sed -i "s/^/39-13-0924_pre_ATROPOS_GMM_POSTERIORS2,/" 39-13-0924_pre_ATROPOS_GMM_POSTERIORS2.csv job_39-13-0924_wCSV_pre_ATROPOS_GMM_POSTERIORS3: cd $(WORKDIR)/39-13-0924;c3d 39-13-0924_pre_ATROPOS_GMM_POSTERIORS3.nii.gz 39-13-0924_labels.nii.gz -lstat > 39-13-0924_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/39-13-0924;sed -i "1,2d" 39-13-0924_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/39-13-0924;sed "s/\s\+/,/g" 39-13-0924_pre_ATROPOS_GMM_POSTERIORS3.txt > 39-13-0924_pre_ATROPOS_GMM_POSTERIORS3.csv cd $(WORKDIR)/39-13-0924;sed -i "s/^/39-13-0924_pre_ATROPOS_GMM_POSTERIORS3,/" 39-13-0924_pre_ATROPOS_GMM_POSTERIORS3.csv job_39-13-0924_wCSV_pre_ATROPOS_GMM_POSTERIORS4: cd $(WORKDIR)/39-13-0924;c3d 39-13-0924_pre_ATROPOS_GMM_POSTERIORS4.nii.gz 39-13-0924_labels.nii.gz -lstat > 39-13-0924_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/39-13-0924;sed -i "1,2d" 39-13-0924_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/39-13-0924;sed "s/\s\+/,/g" 39-13-0924_pre_ATROPOS_GMM_POSTERIORS4.txt > 39-13-0924_pre_ATROPOS_GMM_POSTERIORS4.csv cd $(WORKDIR)/39-13-0924;sed -i "s/^/39-13-0924_pre_ATROPOS_GMM_POSTERIORS4,/" 39-13-0924_pre_ATROPOS_GMM_POSTERIORS4.csv job_39-13-0924_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO: cd $(WORKDIR)/39-13-0924;c3d 39-13-0924_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.nii.gz 39-13-0924_labels.nii.gz -lstat > 39-13-0924_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/39-13-0924;sed -i "1,2d" 39-13-0924_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/39-13-0924;sed "s/\s\+/,/g" 39-13-0924_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt > 39-13-0924_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv cd $(WORKDIR)/39-13-0924;sed -i "s/^/39-13-0924_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO,/" 39-13-0924_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv job_39-13-0924_wCSV_pre_ENTROPY_RADIUS_1: cd $(WORKDIR)/39-13-0924;c3d 39-13-0924_pre_ENTROPY_RADIUS_1.nii.gz 39-13-0924_labels.nii.gz -lstat > 39-13-0924_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/39-13-0924;sed -i "1,2d" 39-13-0924_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/39-13-0924;sed "s/\s\+/,/g" 39-13-0924_pre_ENTROPY_RADIUS_1.txt > 39-13-0924_pre_ENTROPY_RADIUS_1.csv cd $(WORKDIR)/39-13-0924;sed -i "s/^/39-13-0924_pre_ENTROPY_RADIUS_1,/" 39-13-0924_pre_ENTROPY_RADIUS_1.csv job_39-13-0924_wCSV_pre_ENTROPY_RADIUS_3: cd $(WORKDIR)/39-13-0924;c3d 39-13-0924_pre_ENTROPY_RADIUS_3.nii.gz 39-13-0924_labels.nii.gz -lstat > 39-13-0924_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/39-13-0924;sed -i "1,2d" 39-13-0924_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/39-13-0924;sed "s/\s\+/,/g" 39-13-0924_pre_ENTROPY_RADIUS_3.txt > 39-13-0924_pre_ENTROPY_RADIUS_3.csv cd $(WORKDIR)/39-13-0924;sed -i "s/^/39-13-0924_pre_ENTROPY_RADIUS_3,/" 39-13-0924_pre_ENTROPY_RADIUS_3.csv job_39-13-0924_wCSV_pre_MEAN_RADIUS_1: cd $(WORKDIR)/39-13-0924;c3d 39-13-0924_pre_MEAN_RADIUS_1.nii.gz 39-13-0924_labels.nii.gz -lstat > 39-13-0924_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/39-13-0924;sed -i "1,2d" 39-13-0924_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/39-13-0924;sed "s/\s\+/,/g" 39-13-0924_pre_MEAN_RADIUS_1.txt > 39-13-0924_pre_MEAN_RADIUS_1.csv cd $(WORKDIR)/39-13-0924;sed -i "s/^/39-13-0924_pre_MEAN_RADIUS_1,/" 39-13-0924_pre_MEAN_RADIUS_1.csv job_39-13-0924_wCSV_pre_MEAN_RADIUS_3: cd $(WORKDIR)/39-13-0924;c3d 39-13-0924_pre_MEAN_RADIUS_3.nii.gz 39-13-0924_labels.nii.gz -lstat > 39-13-0924_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/39-13-0924;sed -i "1,2d" 39-13-0924_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/39-13-0924;sed "s/\s\+/,/g" 39-13-0924_pre_MEAN_RADIUS_3.txt > 39-13-0924_pre_MEAN_RADIUS_3.csv cd $(WORKDIR)/39-13-0924;sed -i "s/^/39-13-0924_pre_MEAN_RADIUS_3,/" 39-13-0924_pre_MEAN_RADIUS_3.csv job_39-13-0924_wCSV_pre_NORMALIZED: cd $(WORKDIR)/39-13-0924;c3d 39-13-0924_pre_NORMALIZED.nii.gz 39-13-0924_labels.nii.gz -lstat > 39-13-0924_pre_NORMALIZED.txt cd $(WORKDIR)/39-13-0924;sed -i "1,2d" 39-13-0924_pre_NORMALIZED.txt cd $(WORKDIR)/39-13-0924;sed "s/\s\+/,/g" 39-13-0924_pre_NORMALIZED.txt > 39-13-0924_pre_NORMALIZED.csv cd $(WORKDIR)/39-13-0924;sed -i "s/^/39-13-0924_pre_NORMALIZED,/" 39-13-0924_pre_NORMALIZED.csv job_39-13-0924_wCSV_pre_SIGMA_RADIUS_1: cd $(WORKDIR)/39-13-0924;c3d 39-13-0924_pre_SIGMA_RADIUS_1.nii.gz 39-13-0924_labels.nii.gz -lstat > 39-13-0924_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/39-13-0924;sed -i "1,2d" 39-13-0924_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/39-13-0924;sed "s/\s\+/,/g" 39-13-0924_pre_SIGMA_RADIUS_1.txt > 39-13-0924_pre_SIGMA_RADIUS_1.csv cd $(WORKDIR)/39-13-0924;sed -i "s/^/39-13-0924_pre_SIGMA_RADIUS_1,/" 39-13-0924_pre_SIGMA_RADIUS_1.csv job_39-13-0924_wCSV_pre_SIGMA_RADIUS_3: cd $(WORKDIR)/39-13-0924;c3d 39-13-0924_pre_SIGMA_RADIUS_3.nii.gz 39-13-0924_labels.nii.gz -lstat > 39-13-0924_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/39-13-0924;sed -i "1,2d" 39-13-0924_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/39-13-0924;sed "s/\s\+/,/g" 39-13-0924_pre_SIGMA_RADIUS_3.txt > 39-13-0924_pre_SIGMA_RADIUS_3.csv cd $(WORKDIR)/39-13-0924;sed -i "s/^/39-13-0924_pre_SIGMA_RADIUS_3,/" 39-13-0924_pre_SIGMA_RADIUS_3.csv job_39-13-0924_wCSV_pre_SKEWNESS_RADIUS_1: cd $(WORKDIR)/39-13-0924;c3d 39-13-0924_pre_SKEWNESS_RADIUS_1.nii.gz 39-13-0924_labels.nii.gz -lstat > 39-13-0924_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/39-13-0924;sed -i "1,2d" 39-13-0924_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/39-13-0924;sed "s/\s\+/,/g" 39-13-0924_pre_SKEWNESS_RADIUS_1.txt > 39-13-0924_pre_SKEWNESS_RADIUS_1.csv cd $(WORKDIR)/39-13-0924;sed -i "s/^/39-13-0924_pre_SKEWNESS_RADIUS_1,/" 39-13-0924_pre_SKEWNESS_RADIUS_1.csv job_39-13-0924_wCSV_pre_SKEWNESS_RADIUS_3: cd $(WORKDIR)/39-13-0924;c3d 39-13-0924_pre_SKEWNESS_RADIUS_3.nii.gz 39-13-0924_labels.nii.gz -lstat > 39-13-0924_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/39-13-0924;sed -i "1,2d" 39-13-0924_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/39-13-0924;sed "s/\s\+/,/g" 39-13-0924_pre_SKEWNESS_RADIUS_3.txt > 39-13-0924_pre_SKEWNESS_RADIUS_3.csv cd $(WORKDIR)/39-13-0924;sed -i "s/^/39-13-0924_pre_SKEWNESS_RADIUS_3,/" 39-13-0924_pre_SKEWNESS_RADIUS_3.csv job_39-13-0924_wCSV_pre__DIFFERENCE: cd $(WORKDIR)/39-13-0924;c3d 39-13-0924_pre__DIFFERENCE.nii.gz 39-13-0924_labels.nii.gz -lstat > 39-13-0924_pre__DIFFERENCE.txt cd $(WORKDIR)/39-13-0924;sed -i "1,2d" 39-13-0924_pre__DIFFERENCE.txt cd $(WORKDIR)/39-13-0924;sed "s/\s\+/,/g" 39-13-0924_pre__DIFFERENCE.txt > 39-13-0924_pre__DIFFERENCE.csv cd $(WORKDIR)/39-13-0924;sed -i "s/^/39-13-0924_pre__DIFFERENCE,/" 39-13-0924_pre__DIFFERENCE.csv job_40-13-1405_crFI: cd $(WORKDIR)/40-13-1405;c3d 40-13-1405_grey.nii.gz 40-13-1405_labels.nii.gz -copy-transform -o 40-13-1405_labels.nii.gz cd $(WORKDIR)/40-13-1405;c3d 40-13-1405_grey.nii.gz -orient RAI -o 40-13-1405_grey.nii.gz cd $(WORKDIR)/40-13-1405;c3d 40-13-1405_labels.nii.gz -orient RAI -o 40-13-1405_labels.nii.gz cd $(WORKDIR)/40-13-1405;c3d 40-13-1405_labels.nii.gz -binarize -o 40-13-1405_mask.nii.gz cd $(WORKDIR)/40-13-1405;../createFeatureImagesOvary.sh -d 3 -x 40-13-1405_mask.nii.gz -l3 -n pre -a 40-13-1405_grey.nii.gz -f 0x2 -o ./40-13-1405_ -r 1 -r 3 -s 2 -b 4 job_40-13-1405_wCSV_NORMALIZED_DISTANCE: cd $(WORKDIR)/40-13-1405;c3d 40-13-1405_NORMALIZED_DISTANCE.nii.gz 40-13-1405_labels.nii.gz -lstat > 40-13-1405_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/40-13-1405;sed -i "1,2d" 40-13-1405_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/40-13-1405;sed "s/\s\+/,/g" 40-13-1405_NORMALIZED_DISTANCE.txt > 40-13-1405_NORMALIZED_DISTANCE.csv cd $(WORKDIR)/40-13-1405;sed -i "s/^/40-13-1405_NORMALIZED_DISTANCE,/" 40-13-1405_NORMALIZED_DISTANCE.csv job_40-13-1405_wCSV_pre_ATROPOS_GMM: cd $(WORKDIR)/40-13-1405;c3d 40-13-1405_pre_ATROPOS_GMM.nii.gz 40-13-1405_labels.nii.gz -lstat > 40-13-1405_pre_ATROPOS_GMM.txt cd $(WORKDIR)/40-13-1405;sed -i "1,2d" 40-13-1405_pre_ATROPOS_GMM.txt cd $(WORKDIR)/40-13-1405;sed "s/\s\+/,/g" 40-13-1405_pre_ATROPOS_GMM.txt > 40-13-1405_pre_ATROPOS_GMM.csv cd $(WORKDIR)/40-13-1405;sed -i "s/^/40-13-1405_pre_ATROPOS_GMM,/" 40-13-1405_pre_ATROPOS_GMM.csv job_40-13-1405_wCSV_pre_ATROPOS_GMM_ECCENTRICITY: cd $(WORKDIR)/40-13-1405;c3d 40-13-1405_pre_ATROPOS_GMM_ECCENTRICITY.nii.gz 40-13-1405_labels.nii.gz -lstat > 40-13-1405_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/40-13-1405;sed -i "1,2d" 40-13-1405_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/40-13-1405;sed "s/\s\+/,/g" 40-13-1405_pre_ATROPOS_GMM_ECCENTRICITY.txt > 40-13-1405_pre_ATROPOS_GMM_ECCENTRICITY.csv cd $(WORKDIR)/40-13-1405;sed -i "s/^/40-13-1405_pre_ATROPOS_GMM_ECCENTRICITY,/" 40-13-1405_pre_ATROPOS_GMM_ECCENTRICITY.csv job_40-13-1405_wCSV_pre_ATROPOS_GMM_ELONGATION: cd $(WORKDIR)/40-13-1405;c3d 40-13-1405_pre_ATROPOS_GMM_ELONGATION.nii.gz 40-13-1405_labels.nii.gz -lstat > 40-13-1405_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/40-13-1405;sed -i "1,2d" 40-13-1405_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/40-13-1405;sed "s/\s\+/,/g" 40-13-1405_pre_ATROPOS_GMM_ELONGATION.txt > 40-13-1405_pre_ATROPOS_GMM_ELONGATION.csv cd $(WORKDIR)/40-13-1405;sed -i "s/^/40-13-1405_pre_ATROPOS_GMM_ELONGATION,/" 40-13-1405_pre_ATROPOS_GMM_ELONGATION.csv job_40-13-1405_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE: cd $(WORKDIR)/40-13-1405;c3d 40-13-1405_pre_ATROPOS_GMM_LABEL3_DISTANCE.nii.gz 40-13-1405_labels.nii.gz -lstat > 40-13-1405_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/40-13-1405;sed -i "1,2d" 40-13-1405_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/40-13-1405;sed "s/\s\+/,/g" 40-13-1405_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt > 40-13-1405_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv cd $(WORKDIR)/40-13-1405;sed -i "s/^/40-13-1405_pre_ATROPOS_GMM_LABEL3_DISTANCE,/" 40-13-1405_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv job_40-13-1405_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME: cd $(WORKDIR)/40-13-1405;c3d 40-13-1405_pre_ATROPOS_GMM_PHYSICAL_VOLUME.nii.gz 40-13-1405_labels.nii.gz -lstat > 40-13-1405_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/40-13-1405;sed -i "1,2d" 40-13-1405_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/40-13-1405;sed "s/\s\+/,/g" 40-13-1405_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt > 40-13-1405_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv cd $(WORKDIR)/40-13-1405;sed -i "s/^/40-13-1405_pre_ATROPOS_GMM_PHYSICAL_VOLUME,/" 40-13-1405_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv job_40-13-1405_wCSV_pre_ATROPOS_GMM_POSTERIORS1: cd $(WORKDIR)/40-13-1405;c3d 40-13-1405_pre_ATROPOS_GMM_POSTERIORS1.nii.gz 40-13-1405_labels.nii.gz -lstat > 40-13-1405_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/40-13-1405;sed -i "1,2d" 40-13-1405_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/40-13-1405;sed "s/\s\+/,/g" 40-13-1405_pre_ATROPOS_GMM_POSTERIORS1.txt > 40-13-1405_pre_ATROPOS_GMM_POSTERIORS1.csv cd $(WORKDIR)/40-13-1405;sed -i "s/^/40-13-1405_pre_ATROPOS_GMM_POSTERIORS1,/" 40-13-1405_pre_ATROPOS_GMM_POSTERIORS1.csv job_40-13-1405_wCSV_pre_ATROPOS_GMM_POSTERIORS2: cd $(WORKDIR)/40-13-1405;c3d 40-13-1405_pre_ATROPOS_GMM_POSTERIORS2.nii.gz 40-13-1405_labels.nii.gz -lstat > 40-13-1405_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/40-13-1405;sed -i "1,2d" 40-13-1405_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/40-13-1405;sed "s/\s\+/,/g" 40-13-1405_pre_ATROPOS_GMM_POSTERIORS2.txt > 40-13-1405_pre_ATROPOS_GMM_POSTERIORS2.csv cd $(WORKDIR)/40-13-1405;sed -i "s/^/40-13-1405_pre_ATROPOS_GMM_POSTERIORS2,/" 40-13-1405_pre_ATROPOS_GMM_POSTERIORS2.csv job_40-13-1405_wCSV_pre_ATROPOS_GMM_POSTERIORS3: cd $(WORKDIR)/40-13-1405;c3d 40-13-1405_pre_ATROPOS_GMM_POSTERIORS3.nii.gz 40-13-1405_labels.nii.gz -lstat > 40-13-1405_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/40-13-1405;sed -i "1,2d" 40-13-1405_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/40-13-1405;sed "s/\s\+/,/g" 40-13-1405_pre_ATROPOS_GMM_POSTERIORS3.txt > 40-13-1405_pre_ATROPOS_GMM_POSTERIORS3.csv cd $(WORKDIR)/40-13-1405;sed -i "s/^/40-13-1405_pre_ATROPOS_GMM_POSTERIORS3,/" 40-13-1405_pre_ATROPOS_GMM_POSTERIORS3.csv job_40-13-1405_wCSV_pre_ATROPOS_GMM_POSTERIORS4: cd $(WORKDIR)/40-13-1405;c3d 40-13-1405_pre_ATROPOS_GMM_POSTERIORS4.nii.gz 40-13-1405_labels.nii.gz -lstat > 40-13-1405_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/40-13-1405;sed -i "1,2d" 40-13-1405_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/40-13-1405;sed "s/\s\+/,/g" 40-13-1405_pre_ATROPOS_GMM_POSTERIORS4.txt > 40-13-1405_pre_ATROPOS_GMM_POSTERIORS4.csv cd $(WORKDIR)/40-13-1405;sed -i "s/^/40-13-1405_pre_ATROPOS_GMM_POSTERIORS4,/" 40-13-1405_pre_ATROPOS_GMM_POSTERIORS4.csv job_40-13-1405_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO: cd $(WORKDIR)/40-13-1405;c3d 40-13-1405_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.nii.gz 40-13-1405_labels.nii.gz -lstat > 40-13-1405_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/40-13-1405;sed -i "1,2d" 40-13-1405_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/40-13-1405;sed "s/\s\+/,/g" 40-13-1405_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt > 40-13-1405_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv cd $(WORKDIR)/40-13-1405;sed -i "s/^/40-13-1405_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO,/" 40-13-1405_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv job_40-13-1405_wCSV_pre_ENTROPY_RADIUS_1: cd $(WORKDIR)/40-13-1405;c3d 40-13-1405_pre_ENTROPY_RADIUS_1.nii.gz 40-13-1405_labels.nii.gz -lstat > 40-13-1405_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/40-13-1405;sed -i "1,2d" 40-13-1405_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/40-13-1405;sed "s/\s\+/,/g" 40-13-1405_pre_ENTROPY_RADIUS_1.txt > 40-13-1405_pre_ENTROPY_RADIUS_1.csv cd $(WORKDIR)/40-13-1405;sed -i "s/^/40-13-1405_pre_ENTROPY_RADIUS_1,/" 40-13-1405_pre_ENTROPY_RADIUS_1.csv job_40-13-1405_wCSV_pre_ENTROPY_RADIUS_3: cd $(WORKDIR)/40-13-1405;c3d 40-13-1405_pre_ENTROPY_RADIUS_3.nii.gz 40-13-1405_labels.nii.gz -lstat > 40-13-1405_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/40-13-1405;sed -i "1,2d" 40-13-1405_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/40-13-1405;sed "s/\s\+/,/g" 40-13-1405_pre_ENTROPY_RADIUS_3.txt > 40-13-1405_pre_ENTROPY_RADIUS_3.csv cd $(WORKDIR)/40-13-1405;sed -i "s/^/40-13-1405_pre_ENTROPY_RADIUS_3,/" 40-13-1405_pre_ENTROPY_RADIUS_3.csv job_40-13-1405_wCSV_pre_MEAN_RADIUS_1: cd $(WORKDIR)/40-13-1405;c3d 40-13-1405_pre_MEAN_RADIUS_1.nii.gz 40-13-1405_labels.nii.gz -lstat > 40-13-1405_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/40-13-1405;sed -i "1,2d" 40-13-1405_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/40-13-1405;sed "s/\s\+/,/g" 40-13-1405_pre_MEAN_RADIUS_1.txt > 40-13-1405_pre_MEAN_RADIUS_1.csv cd $(WORKDIR)/40-13-1405;sed -i "s/^/40-13-1405_pre_MEAN_RADIUS_1,/" 40-13-1405_pre_MEAN_RADIUS_1.csv job_40-13-1405_wCSV_pre_MEAN_RADIUS_3: cd $(WORKDIR)/40-13-1405;c3d 40-13-1405_pre_MEAN_RADIUS_3.nii.gz 40-13-1405_labels.nii.gz -lstat > 40-13-1405_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/40-13-1405;sed -i "1,2d" 40-13-1405_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/40-13-1405;sed "s/\s\+/,/g" 40-13-1405_pre_MEAN_RADIUS_3.txt > 40-13-1405_pre_MEAN_RADIUS_3.csv cd $(WORKDIR)/40-13-1405;sed -i "s/^/40-13-1405_pre_MEAN_RADIUS_3,/" 40-13-1405_pre_MEAN_RADIUS_3.csv job_40-13-1405_wCSV_pre_NORMALIZED: cd $(WORKDIR)/40-13-1405;c3d 40-13-1405_pre_NORMALIZED.nii.gz 40-13-1405_labels.nii.gz -lstat > 40-13-1405_pre_NORMALIZED.txt cd $(WORKDIR)/40-13-1405;sed -i "1,2d" 40-13-1405_pre_NORMALIZED.txt cd $(WORKDIR)/40-13-1405;sed "s/\s\+/,/g" 40-13-1405_pre_NORMALIZED.txt > 40-13-1405_pre_NORMALIZED.csv cd $(WORKDIR)/40-13-1405;sed -i "s/^/40-13-1405_pre_NORMALIZED,/" 40-13-1405_pre_NORMALIZED.csv job_40-13-1405_wCSV_pre_SIGMA_RADIUS_1: cd $(WORKDIR)/40-13-1405;c3d 40-13-1405_pre_SIGMA_RADIUS_1.nii.gz 40-13-1405_labels.nii.gz -lstat > 40-13-1405_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/40-13-1405;sed -i "1,2d" 40-13-1405_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/40-13-1405;sed "s/\s\+/,/g" 40-13-1405_pre_SIGMA_RADIUS_1.txt > 40-13-1405_pre_SIGMA_RADIUS_1.csv cd $(WORKDIR)/40-13-1405;sed -i "s/^/40-13-1405_pre_SIGMA_RADIUS_1,/" 40-13-1405_pre_SIGMA_RADIUS_1.csv job_40-13-1405_wCSV_pre_SIGMA_RADIUS_3: cd $(WORKDIR)/40-13-1405;c3d 40-13-1405_pre_SIGMA_RADIUS_3.nii.gz 40-13-1405_labels.nii.gz -lstat > 40-13-1405_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/40-13-1405;sed -i "1,2d" 40-13-1405_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/40-13-1405;sed "s/\s\+/,/g" 40-13-1405_pre_SIGMA_RADIUS_3.txt > 40-13-1405_pre_SIGMA_RADIUS_3.csv cd $(WORKDIR)/40-13-1405;sed -i "s/^/40-13-1405_pre_SIGMA_RADIUS_3,/" 40-13-1405_pre_SIGMA_RADIUS_3.csv job_40-13-1405_wCSV_pre_SKEWNESS_RADIUS_1: cd $(WORKDIR)/40-13-1405;c3d 40-13-1405_pre_SKEWNESS_RADIUS_1.nii.gz 40-13-1405_labels.nii.gz -lstat > 40-13-1405_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/40-13-1405;sed -i "1,2d" 40-13-1405_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/40-13-1405;sed "s/\s\+/,/g" 40-13-1405_pre_SKEWNESS_RADIUS_1.txt > 40-13-1405_pre_SKEWNESS_RADIUS_1.csv cd $(WORKDIR)/40-13-1405;sed -i "s/^/40-13-1405_pre_SKEWNESS_RADIUS_1,/" 40-13-1405_pre_SKEWNESS_RADIUS_1.csv job_40-13-1405_wCSV_pre_SKEWNESS_RADIUS_3: cd $(WORKDIR)/40-13-1405;c3d 40-13-1405_pre_SKEWNESS_RADIUS_3.nii.gz 40-13-1405_labels.nii.gz -lstat > 40-13-1405_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/40-13-1405;sed -i "1,2d" 40-13-1405_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/40-13-1405;sed "s/\s\+/,/g" 40-13-1405_pre_SKEWNESS_RADIUS_3.txt > 40-13-1405_pre_SKEWNESS_RADIUS_3.csv cd $(WORKDIR)/40-13-1405;sed -i "s/^/40-13-1405_pre_SKEWNESS_RADIUS_3,/" 40-13-1405_pre_SKEWNESS_RADIUS_3.csv job_40-13-1405_wCSV_pre__DIFFERENCE: cd $(WORKDIR)/40-13-1405;c3d 40-13-1405_pre__DIFFERENCE.nii.gz 40-13-1405_labels.nii.gz -lstat > 40-13-1405_pre__DIFFERENCE.txt cd $(WORKDIR)/40-13-1405;sed -i "1,2d" 40-13-1405_pre__DIFFERENCE.txt cd $(WORKDIR)/40-13-1405;sed "s/\s\+/,/g" 40-13-1405_pre__DIFFERENCE.txt > 40-13-1405_pre__DIFFERENCE.csv cd $(WORKDIR)/40-13-1405;sed -i "s/^/40-13-1405_pre__DIFFERENCE,/" 40-13-1405_pre__DIFFERENCE.csv job_41-13-1408_crFI: cd $(WORKDIR)/41-13-1408;c3d 41-13-1408_grey.nii.gz 41-13-1408_labels.nii.gz -copy-transform -o 41-13-1408_labels.nii.gz cd $(WORKDIR)/41-13-1408;c3d 41-13-1408_grey.nii.gz -orient RAI -o 41-13-1408_grey.nii.gz cd $(WORKDIR)/41-13-1408;c3d 41-13-1408_labels.nii.gz -orient RAI -o 41-13-1408_labels.nii.gz cd $(WORKDIR)/41-13-1408;c3d 41-13-1408_labels.nii.gz -binarize -o 41-13-1408_mask.nii.gz cd $(WORKDIR)/41-13-1408;../createFeatureImagesOvary.sh -d 3 -x 41-13-1408_mask.nii.gz -l3 -n pre -a 41-13-1408_grey.nii.gz -f 0x2 -o ./41-13-1408_ -r 1 -r 3 -s 2 -b 4 job_41-13-1408_wCSV_NORMALIZED_DISTANCE: cd $(WORKDIR)/41-13-1408;c3d 41-13-1408_NORMALIZED_DISTANCE.nii.gz 41-13-1408_labels.nii.gz -lstat > 41-13-1408_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/41-13-1408;sed -i "1,2d" 41-13-1408_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/41-13-1408;sed "s/\s\+/,/g" 41-13-1408_NORMALIZED_DISTANCE.txt > 41-13-1408_NORMALIZED_DISTANCE.csv cd $(WORKDIR)/41-13-1408;sed -i "s/^/41-13-1408_NORMALIZED_DISTANCE,/" 41-13-1408_NORMALIZED_DISTANCE.csv job_41-13-1408_wCSV_pre_ATROPOS_GMM: cd $(WORKDIR)/41-13-1408;c3d 41-13-1408_pre_ATROPOS_GMM.nii.gz 41-13-1408_labels.nii.gz -lstat > 41-13-1408_pre_ATROPOS_GMM.txt cd $(WORKDIR)/41-13-1408;sed -i "1,2d" 41-13-1408_pre_ATROPOS_GMM.txt cd $(WORKDIR)/41-13-1408;sed "s/\s\+/,/g" 41-13-1408_pre_ATROPOS_GMM.txt > 41-13-1408_pre_ATROPOS_GMM.csv cd $(WORKDIR)/41-13-1408;sed -i "s/^/41-13-1408_pre_ATROPOS_GMM,/" 41-13-1408_pre_ATROPOS_GMM.csv job_41-13-1408_wCSV_pre_ATROPOS_GMM_ECCENTRICITY: cd $(WORKDIR)/41-13-1408;c3d 41-13-1408_pre_ATROPOS_GMM_ECCENTRICITY.nii.gz 41-13-1408_labels.nii.gz -lstat > 41-13-1408_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/41-13-1408;sed -i "1,2d" 41-13-1408_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/41-13-1408;sed "s/\s\+/,/g" 41-13-1408_pre_ATROPOS_GMM_ECCENTRICITY.txt > 41-13-1408_pre_ATROPOS_GMM_ECCENTRICITY.csv cd $(WORKDIR)/41-13-1408;sed -i "s/^/41-13-1408_pre_ATROPOS_GMM_ECCENTRICITY,/" 41-13-1408_pre_ATROPOS_GMM_ECCENTRICITY.csv job_41-13-1408_wCSV_pre_ATROPOS_GMM_ELONGATION: cd $(WORKDIR)/41-13-1408;c3d 41-13-1408_pre_ATROPOS_GMM_ELONGATION.nii.gz 41-13-1408_labels.nii.gz -lstat > 41-13-1408_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/41-13-1408;sed -i "1,2d" 41-13-1408_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/41-13-1408;sed "s/\s\+/,/g" 41-13-1408_pre_ATROPOS_GMM_ELONGATION.txt > 41-13-1408_pre_ATROPOS_GMM_ELONGATION.csv cd $(WORKDIR)/41-13-1408;sed -i "s/^/41-13-1408_pre_ATROPOS_GMM_ELONGATION,/" 41-13-1408_pre_ATROPOS_GMM_ELONGATION.csv job_41-13-1408_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE: cd $(WORKDIR)/41-13-1408;c3d 41-13-1408_pre_ATROPOS_GMM_LABEL3_DISTANCE.nii.gz 41-13-1408_labels.nii.gz -lstat > 41-13-1408_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/41-13-1408;sed -i "1,2d" 41-13-1408_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/41-13-1408;sed "s/\s\+/,/g" 41-13-1408_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt > 41-13-1408_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv cd $(WORKDIR)/41-13-1408;sed -i "s/^/41-13-1408_pre_ATROPOS_GMM_LABEL3_DISTANCE,/" 41-13-1408_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv job_41-13-1408_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME: cd $(WORKDIR)/41-13-1408;c3d 41-13-1408_pre_ATROPOS_GMM_PHYSICAL_VOLUME.nii.gz 41-13-1408_labels.nii.gz -lstat > 41-13-1408_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/41-13-1408;sed -i "1,2d" 41-13-1408_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/41-13-1408;sed "s/\s\+/,/g" 41-13-1408_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt > 41-13-1408_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv cd $(WORKDIR)/41-13-1408;sed -i "s/^/41-13-1408_pre_ATROPOS_GMM_PHYSICAL_VOLUME,/" 41-13-1408_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv job_41-13-1408_wCSV_pre_ATROPOS_GMM_POSTERIORS1: cd $(WORKDIR)/41-13-1408;c3d 41-13-1408_pre_ATROPOS_GMM_POSTERIORS1.nii.gz 41-13-1408_labels.nii.gz -lstat > 41-13-1408_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/41-13-1408;sed -i "1,2d" 41-13-1408_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/41-13-1408;sed "s/\s\+/,/g" 41-13-1408_pre_ATROPOS_GMM_POSTERIORS1.txt > 41-13-1408_pre_ATROPOS_GMM_POSTERIORS1.csv cd $(WORKDIR)/41-13-1408;sed -i "s/^/41-13-1408_pre_ATROPOS_GMM_POSTERIORS1,/" 41-13-1408_pre_ATROPOS_GMM_POSTERIORS1.csv job_41-13-1408_wCSV_pre_ATROPOS_GMM_POSTERIORS2: cd $(WORKDIR)/41-13-1408;c3d 41-13-1408_pre_ATROPOS_GMM_POSTERIORS2.nii.gz 41-13-1408_labels.nii.gz -lstat > 41-13-1408_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/41-13-1408;sed -i "1,2d" 41-13-1408_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/41-13-1408;sed "s/\s\+/,/g" 41-13-1408_pre_ATROPOS_GMM_POSTERIORS2.txt > 41-13-1408_pre_ATROPOS_GMM_POSTERIORS2.csv cd $(WORKDIR)/41-13-1408;sed -i "s/^/41-13-1408_pre_ATROPOS_GMM_POSTERIORS2,/" 41-13-1408_pre_ATROPOS_GMM_POSTERIORS2.csv job_41-13-1408_wCSV_pre_ATROPOS_GMM_POSTERIORS3: cd $(WORKDIR)/41-13-1408;c3d 41-13-1408_pre_ATROPOS_GMM_POSTERIORS3.nii.gz 41-13-1408_labels.nii.gz -lstat > 41-13-1408_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/41-13-1408;sed -i "1,2d" 41-13-1408_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/41-13-1408;sed "s/\s\+/,/g" 41-13-1408_pre_ATROPOS_GMM_POSTERIORS3.txt > 41-13-1408_pre_ATROPOS_GMM_POSTERIORS3.csv cd $(WORKDIR)/41-13-1408;sed -i "s/^/41-13-1408_pre_ATROPOS_GMM_POSTERIORS3,/" 41-13-1408_pre_ATROPOS_GMM_POSTERIORS3.csv job_41-13-1408_wCSV_pre_ATROPOS_GMM_POSTERIORS4: cd $(WORKDIR)/41-13-1408;c3d 41-13-1408_pre_ATROPOS_GMM_POSTERIORS4.nii.gz 41-13-1408_labels.nii.gz -lstat > 41-13-1408_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/41-13-1408;sed -i "1,2d" 41-13-1408_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/41-13-1408;sed "s/\s\+/,/g" 41-13-1408_pre_ATROPOS_GMM_POSTERIORS4.txt > 41-13-1408_pre_ATROPOS_GMM_POSTERIORS4.csv cd $(WORKDIR)/41-13-1408;sed -i "s/^/41-13-1408_pre_ATROPOS_GMM_POSTERIORS4,/" 41-13-1408_pre_ATROPOS_GMM_POSTERIORS4.csv job_41-13-1408_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO: cd $(WORKDIR)/41-13-1408;c3d 41-13-1408_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.nii.gz 41-13-1408_labels.nii.gz -lstat > 41-13-1408_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/41-13-1408;sed -i "1,2d" 41-13-1408_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/41-13-1408;sed "s/\s\+/,/g" 41-13-1408_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt > 41-13-1408_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv cd $(WORKDIR)/41-13-1408;sed -i "s/^/41-13-1408_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO,/" 41-13-1408_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv job_41-13-1408_wCSV_pre_ENTROPY_RADIUS_1: cd $(WORKDIR)/41-13-1408;c3d 41-13-1408_pre_ENTROPY_RADIUS_1.nii.gz 41-13-1408_labels.nii.gz -lstat > 41-13-1408_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/41-13-1408;sed -i "1,2d" 41-13-1408_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/41-13-1408;sed "s/\s\+/,/g" 41-13-1408_pre_ENTROPY_RADIUS_1.txt > 41-13-1408_pre_ENTROPY_RADIUS_1.csv cd $(WORKDIR)/41-13-1408;sed -i "s/^/41-13-1408_pre_ENTROPY_RADIUS_1,/" 41-13-1408_pre_ENTROPY_RADIUS_1.csv job_41-13-1408_wCSV_pre_ENTROPY_RADIUS_3: cd $(WORKDIR)/41-13-1408;c3d 41-13-1408_pre_ENTROPY_RADIUS_3.nii.gz 41-13-1408_labels.nii.gz -lstat > 41-13-1408_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/41-13-1408;sed -i "1,2d" 41-13-1408_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/41-13-1408;sed "s/\s\+/,/g" 41-13-1408_pre_ENTROPY_RADIUS_3.txt > 41-13-1408_pre_ENTROPY_RADIUS_3.csv cd $(WORKDIR)/41-13-1408;sed -i "s/^/41-13-1408_pre_ENTROPY_RADIUS_3,/" 41-13-1408_pre_ENTROPY_RADIUS_3.csv job_41-13-1408_wCSV_pre_MEAN_RADIUS_1: cd $(WORKDIR)/41-13-1408;c3d 41-13-1408_pre_MEAN_RADIUS_1.nii.gz 41-13-1408_labels.nii.gz -lstat > 41-13-1408_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/41-13-1408;sed -i "1,2d" 41-13-1408_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/41-13-1408;sed "s/\s\+/,/g" 41-13-1408_pre_MEAN_RADIUS_1.txt > 41-13-1408_pre_MEAN_RADIUS_1.csv cd $(WORKDIR)/41-13-1408;sed -i "s/^/41-13-1408_pre_MEAN_RADIUS_1,/" 41-13-1408_pre_MEAN_RADIUS_1.csv job_41-13-1408_wCSV_pre_MEAN_RADIUS_3: cd $(WORKDIR)/41-13-1408;c3d 41-13-1408_pre_MEAN_RADIUS_3.nii.gz 41-13-1408_labels.nii.gz -lstat > 41-13-1408_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/41-13-1408;sed -i "1,2d" 41-13-1408_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/41-13-1408;sed "s/\s\+/,/g" 41-13-1408_pre_MEAN_RADIUS_3.txt > 41-13-1408_pre_MEAN_RADIUS_3.csv cd $(WORKDIR)/41-13-1408;sed -i "s/^/41-13-1408_pre_MEAN_RADIUS_3,/" 41-13-1408_pre_MEAN_RADIUS_3.csv job_41-13-1408_wCSV_pre_NORMALIZED: cd $(WORKDIR)/41-13-1408;c3d 41-13-1408_pre_NORMALIZED.nii.gz 41-13-1408_labels.nii.gz -lstat > 41-13-1408_pre_NORMALIZED.txt cd $(WORKDIR)/41-13-1408;sed -i "1,2d" 41-13-1408_pre_NORMALIZED.txt cd $(WORKDIR)/41-13-1408;sed "s/\s\+/,/g" 41-13-1408_pre_NORMALIZED.txt > 41-13-1408_pre_NORMALIZED.csv cd $(WORKDIR)/41-13-1408;sed -i "s/^/41-13-1408_pre_NORMALIZED,/" 41-13-1408_pre_NORMALIZED.csv job_41-13-1408_wCSV_pre_SIGMA_RADIUS_1: cd $(WORKDIR)/41-13-1408;c3d 41-13-1408_pre_SIGMA_RADIUS_1.nii.gz 41-13-1408_labels.nii.gz -lstat > 41-13-1408_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/41-13-1408;sed -i "1,2d" 41-13-1408_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/41-13-1408;sed "s/\s\+/,/g" 41-13-1408_pre_SIGMA_RADIUS_1.txt > 41-13-1408_pre_SIGMA_RADIUS_1.csv cd $(WORKDIR)/41-13-1408;sed -i "s/^/41-13-1408_pre_SIGMA_RADIUS_1,/" 41-13-1408_pre_SIGMA_RADIUS_1.csv job_41-13-1408_wCSV_pre_SIGMA_RADIUS_3: cd $(WORKDIR)/41-13-1408;c3d 41-13-1408_pre_SIGMA_RADIUS_3.nii.gz 41-13-1408_labels.nii.gz -lstat > 41-13-1408_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/41-13-1408;sed -i "1,2d" 41-13-1408_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/41-13-1408;sed "s/\s\+/,/g" 41-13-1408_pre_SIGMA_RADIUS_3.txt > 41-13-1408_pre_SIGMA_RADIUS_3.csv cd $(WORKDIR)/41-13-1408;sed -i "s/^/41-13-1408_pre_SIGMA_RADIUS_3,/" 41-13-1408_pre_SIGMA_RADIUS_3.csv job_41-13-1408_wCSV_pre_SKEWNESS_RADIUS_1: cd $(WORKDIR)/41-13-1408;c3d 41-13-1408_pre_SKEWNESS_RADIUS_1.nii.gz 41-13-1408_labels.nii.gz -lstat > 41-13-1408_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/41-13-1408;sed -i "1,2d" 41-13-1408_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/41-13-1408;sed "s/\s\+/,/g" 41-13-1408_pre_SKEWNESS_RADIUS_1.txt > 41-13-1408_pre_SKEWNESS_RADIUS_1.csv cd $(WORKDIR)/41-13-1408;sed -i "s/^/41-13-1408_pre_SKEWNESS_RADIUS_1,/" 41-13-1408_pre_SKEWNESS_RADIUS_1.csv job_41-13-1408_wCSV_pre_SKEWNESS_RADIUS_3: cd $(WORKDIR)/41-13-1408;c3d 41-13-1408_pre_SKEWNESS_RADIUS_3.nii.gz 41-13-1408_labels.nii.gz -lstat > 41-13-1408_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/41-13-1408;sed -i "1,2d" 41-13-1408_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/41-13-1408;sed "s/\s\+/,/g" 41-13-1408_pre_SKEWNESS_RADIUS_3.txt > 41-13-1408_pre_SKEWNESS_RADIUS_3.csv cd $(WORKDIR)/41-13-1408;sed -i "s/^/41-13-1408_pre_SKEWNESS_RADIUS_3,/" 41-13-1408_pre_SKEWNESS_RADIUS_3.csv job_41-13-1408_wCSV_pre__DIFFERENCE: cd $(WORKDIR)/41-13-1408;c3d 41-13-1408_pre__DIFFERENCE.nii.gz 41-13-1408_labels.nii.gz -lstat > 41-13-1408_pre__DIFFERENCE.txt cd $(WORKDIR)/41-13-1408;sed -i "1,2d" 41-13-1408_pre__DIFFERENCE.txt cd $(WORKDIR)/41-13-1408;sed "s/\s\+/,/g" 41-13-1408_pre__DIFFERENCE.txt > 41-13-1408_pre__DIFFERENCE.csv cd $(WORKDIR)/41-13-1408;sed -i "s/^/41-13-1408_pre__DIFFERENCE,/" 41-13-1408_pre__DIFFERENCE.csv job_42-13-1411_crFI: cd $(WORKDIR)/42-13-1411;c3d 42-13-1411_grey.nii.gz 42-13-1411_labels.nii.gz -copy-transform -o 42-13-1411_labels.nii.gz cd $(WORKDIR)/42-13-1411;c3d 42-13-1411_grey.nii.gz -orient RAI -o 42-13-1411_grey.nii.gz cd $(WORKDIR)/42-13-1411;c3d 42-13-1411_labels.nii.gz -orient RAI -o 42-13-1411_labels.nii.gz cd $(WORKDIR)/42-13-1411;c3d 42-13-1411_labels.nii.gz -binarize -o 42-13-1411_mask.nii.gz cd $(WORKDIR)/42-13-1411;../createFeatureImagesOvary.sh -d 3 -x 42-13-1411_mask.nii.gz -l3 -n pre -a 42-13-1411_grey.nii.gz -f 0x2 -o ./42-13-1411_ -r 1 -r 3 -s 2 -b 4 job_42-13-1411_wCSV_NORMALIZED_DISTANCE: cd $(WORKDIR)/42-13-1411;c3d 42-13-1411_NORMALIZED_DISTANCE.nii.gz 42-13-1411_labels.nii.gz -lstat > 42-13-1411_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/42-13-1411;sed -i "1,2d" 42-13-1411_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/42-13-1411;sed "s/\s\+/,/g" 42-13-1411_NORMALIZED_DISTANCE.txt > 42-13-1411_NORMALIZED_DISTANCE.csv cd $(WORKDIR)/42-13-1411;sed -i "s/^/42-13-1411_NORMALIZED_DISTANCE,/" 42-13-1411_NORMALIZED_DISTANCE.csv job_42-13-1411_wCSV_pre_ATROPOS_GMM: cd $(WORKDIR)/42-13-1411;c3d 42-13-1411_pre_ATROPOS_GMM.nii.gz 42-13-1411_labels.nii.gz -lstat > 42-13-1411_pre_ATROPOS_GMM.txt cd $(WORKDIR)/42-13-1411;sed -i "1,2d" 42-13-1411_pre_ATROPOS_GMM.txt cd $(WORKDIR)/42-13-1411;sed "s/\s\+/,/g" 42-13-1411_pre_ATROPOS_GMM.txt > 42-13-1411_pre_ATROPOS_GMM.csv cd $(WORKDIR)/42-13-1411;sed -i "s/^/42-13-1411_pre_ATROPOS_GMM,/" 42-13-1411_pre_ATROPOS_GMM.csv job_42-13-1411_wCSV_pre_ATROPOS_GMM_ECCENTRICITY: cd $(WORKDIR)/42-13-1411;c3d 42-13-1411_pre_ATROPOS_GMM_ECCENTRICITY.nii.gz 42-13-1411_labels.nii.gz -lstat > 42-13-1411_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/42-13-1411;sed -i "1,2d" 42-13-1411_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/42-13-1411;sed "s/\s\+/,/g" 42-13-1411_pre_ATROPOS_GMM_ECCENTRICITY.txt > 42-13-1411_pre_ATROPOS_GMM_ECCENTRICITY.csv cd $(WORKDIR)/42-13-1411;sed -i "s/^/42-13-1411_pre_ATROPOS_GMM_ECCENTRICITY,/" 42-13-1411_pre_ATROPOS_GMM_ECCENTRICITY.csv job_42-13-1411_wCSV_pre_ATROPOS_GMM_ELONGATION: cd $(WORKDIR)/42-13-1411;c3d 42-13-1411_pre_ATROPOS_GMM_ELONGATION.nii.gz 42-13-1411_labels.nii.gz -lstat > 42-13-1411_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/42-13-1411;sed -i "1,2d" 42-13-1411_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/42-13-1411;sed "s/\s\+/,/g" 42-13-1411_pre_ATROPOS_GMM_ELONGATION.txt > 42-13-1411_pre_ATROPOS_GMM_ELONGATION.csv cd $(WORKDIR)/42-13-1411;sed -i "s/^/42-13-1411_pre_ATROPOS_GMM_ELONGATION,/" 42-13-1411_pre_ATROPOS_GMM_ELONGATION.csv job_42-13-1411_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE: cd $(WORKDIR)/42-13-1411;c3d 42-13-1411_pre_ATROPOS_GMM_LABEL3_DISTANCE.nii.gz 42-13-1411_labels.nii.gz -lstat > 42-13-1411_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/42-13-1411;sed -i "1,2d" 42-13-1411_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/42-13-1411;sed "s/\s\+/,/g" 42-13-1411_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt > 42-13-1411_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv cd $(WORKDIR)/42-13-1411;sed -i "s/^/42-13-1411_pre_ATROPOS_GMM_LABEL3_DISTANCE,/" 42-13-1411_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv job_42-13-1411_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME: cd $(WORKDIR)/42-13-1411;c3d 42-13-1411_pre_ATROPOS_GMM_PHYSICAL_VOLUME.nii.gz 42-13-1411_labels.nii.gz -lstat > 42-13-1411_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/42-13-1411;sed -i "1,2d" 42-13-1411_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/42-13-1411;sed "s/\s\+/,/g" 42-13-1411_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt > 42-13-1411_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv cd $(WORKDIR)/42-13-1411;sed -i "s/^/42-13-1411_pre_ATROPOS_GMM_PHYSICAL_VOLUME,/" 42-13-1411_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv job_42-13-1411_wCSV_pre_ATROPOS_GMM_POSTERIORS1: cd $(WORKDIR)/42-13-1411;c3d 42-13-1411_pre_ATROPOS_GMM_POSTERIORS1.nii.gz 42-13-1411_labels.nii.gz -lstat > 42-13-1411_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/42-13-1411;sed -i "1,2d" 42-13-1411_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/42-13-1411;sed "s/\s\+/,/g" 42-13-1411_pre_ATROPOS_GMM_POSTERIORS1.txt > 42-13-1411_pre_ATROPOS_GMM_POSTERIORS1.csv cd $(WORKDIR)/42-13-1411;sed -i "s/^/42-13-1411_pre_ATROPOS_GMM_POSTERIORS1,/" 42-13-1411_pre_ATROPOS_GMM_POSTERIORS1.csv job_42-13-1411_wCSV_pre_ATROPOS_GMM_POSTERIORS2: cd $(WORKDIR)/42-13-1411;c3d 42-13-1411_pre_ATROPOS_GMM_POSTERIORS2.nii.gz 42-13-1411_labels.nii.gz -lstat > 42-13-1411_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/42-13-1411;sed -i "1,2d" 42-13-1411_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/42-13-1411;sed "s/\s\+/,/g" 42-13-1411_pre_ATROPOS_GMM_POSTERIORS2.txt > 42-13-1411_pre_ATROPOS_GMM_POSTERIORS2.csv cd $(WORKDIR)/42-13-1411;sed -i "s/^/42-13-1411_pre_ATROPOS_GMM_POSTERIORS2,/" 42-13-1411_pre_ATROPOS_GMM_POSTERIORS2.csv job_42-13-1411_wCSV_pre_ATROPOS_GMM_POSTERIORS3: cd $(WORKDIR)/42-13-1411;c3d 42-13-1411_pre_ATROPOS_GMM_POSTERIORS3.nii.gz 42-13-1411_labels.nii.gz -lstat > 42-13-1411_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/42-13-1411;sed -i "1,2d" 42-13-1411_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/42-13-1411;sed "s/\s\+/,/g" 42-13-1411_pre_ATROPOS_GMM_POSTERIORS3.txt > 42-13-1411_pre_ATROPOS_GMM_POSTERIORS3.csv cd $(WORKDIR)/42-13-1411;sed -i "s/^/42-13-1411_pre_ATROPOS_GMM_POSTERIORS3,/" 42-13-1411_pre_ATROPOS_GMM_POSTERIORS3.csv job_42-13-1411_wCSV_pre_ATROPOS_GMM_POSTERIORS4: cd $(WORKDIR)/42-13-1411;c3d 42-13-1411_pre_ATROPOS_GMM_POSTERIORS4.nii.gz 42-13-1411_labels.nii.gz -lstat > 42-13-1411_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/42-13-1411;sed -i "1,2d" 42-13-1411_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/42-13-1411;sed "s/\s\+/,/g" 42-13-1411_pre_ATROPOS_GMM_POSTERIORS4.txt > 42-13-1411_pre_ATROPOS_GMM_POSTERIORS4.csv cd $(WORKDIR)/42-13-1411;sed -i "s/^/42-13-1411_pre_ATROPOS_GMM_POSTERIORS4,/" 42-13-1411_pre_ATROPOS_GMM_POSTERIORS4.csv job_42-13-1411_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO: cd $(WORKDIR)/42-13-1411;c3d 42-13-1411_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.nii.gz 42-13-1411_labels.nii.gz -lstat > 42-13-1411_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/42-13-1411;sed -i "1,2d" 42-13-1411_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/42-13-1411;sed "s/\s\+/,/g" 42-13-1411_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt > 42-13-1411_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv cd $(WORKDIR)/42-13-1411;sed -i "s/^/42-13-1411_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO,/" 42-13-1411_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv job_42-13-1411_wCSV_pre_ENTROPY_RADIUS_1: cd $(WORKDIR)/42-13-1411;c3d 42-13-1411_pre_ENTROPY_RADIUS_1.nii.gz 42-13-1411_labels.nii.gz -lstat > 42-13-1411_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/42-13-1411;sed -i "1,2d" 42-13-1411_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/42-13-1411;sed "s/\s\+/,/g" 42-13-1411_pre_ENTROPY_RADIUS_1.txt > 42-13-1411_pre_ENTROPY_RADIUS_1.csv cd $(WORKDIR)/42-13-1411;sed -i "s/^/42-13-1411_pre_ENTROPY_RADIUS_1,/" 42-13-1411_pre_ENTROPY_RADIUS_1.csv job_42-13-1411_wCSV_pre_ENTROPY_RADIUS_3: cd $(WORKDIR)/42-13-1411;c3d 42-13-1411_pre_ENTROPY_RADIUS_3.nii.gz 42-13-1411_labels.nii.gz -lstat > 42-13-1411_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/42-13-1411;sed -i "1,2d" 42-13-1411_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/42-13-1411;sed "s/\s\+/,/g" 42-13-1411_pre_ENTROPY_RADIUS_3.txt > 42-13-1411_pre_ENTROPY_RADIUS_3.csv cd $(WORKDIR)/42-13-1411;sed -i "s/^/42-13-1411_pre_ENTROPY_RADIUS_3,/" 42-13-1411_pre_ENTROPY_RADIUS_3.csv job_42-13-1411_wCSV_pre_MEAN_RADIUS_1: cd $(WORKDIR)/42-13-1411;c3d 42-13-1411_pre_MEAN_RADIUS_1.nii.gz 42-13-1411_labels.nii.gz -lstat > 42-13-1411_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/42-13-1411;sed -i "1,2d" 42-13-1411_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/42-13-1411;sed "s/\s\+/,/g" 42-13-1411_pre_MEAN_RADIUS_1.txt > 42-13-1411_pre_MEAN_RADIUS_1.csv cd $(WORKDIR)/42-13-1411;sed -i "s/^/42-13-1411_pre_MEAN_RADIUS_1,/" 42-13-1411_pre_MEAN_RADIUS_1.csv job_42-13-1411_wCSV_pre_MEAN_RADIUS_3: cd $(WORKDIR)/42-13-1411;c3d 42-13-1411_pre_MEAN_RADIUS_3.nii.gz 42-13-1411_labels.nii.gz -lstat > 42-13-1411_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/42-13-1411;sed -i "1,2d" 42-13-1411_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/42-13-1411;sed "s/\s\+/,/g" 42-13-1411_pre_MEAN_RADIUS_3.txt > 42-13-1411_pre_MEAN_RADIUS_3.csv cd $(WORKDIR)/42-13-1411;sed -i "s/^/42-13-1411_pre_MEAN_RADIUS_3,/" 42-13-1411_pre_MEAN_RADIUS_3.csv job_42-13-1411_wCSV_pre_NORMALIZED: cd $(WORKDIR)/42-13-1411;c3d 42-13-1411_pre_NORMALIZED.nii.gz 42-13-1411_labels.nii.gz -lstat > 42-13-1411_pre_NORMALIZED.txt cd $(WORKDIR)/42-13-1411;sed -i "1,2d" 42-13-1411_pre_NORMALIZED.txt cd $(WORKDIR)/42-13-1411;sed "s/\s\+/,/g" 42-13-1411_pre_NORMALIZED.txt > 42-13-1411_pre_NORMALIZED.csv cd $(WORKDIR)/42-13-1411;sed -i "s/^/42-13-1411_pre_NORMALIZED,/" 42-13-1411_pre_NORMALIZED.csv job_42-13-1411_wCSV_pre_SIGMA_RADIUS_1: cd $(WORKDIR)/42-13-1411;c3d 42-13-1411_pre_SIGMA_RADIUS_1.nii.gz 42-13-1411_labels.nii.gz -lstat > 42-13-1411_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/42-13-1411;sed -i "1,2d" 42-13-1411_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/42-13-1411;sed "s/\s\+/,/g" 42-13-1411_pre_SIGMA_RADIUS_1.txt > 42-13-1411_pre_SIGMA_RADIUS_1.csv cd $(WORKDIR)/42-13-1411;sed -i "s/^/42-13-1411_pre_SIGMA_RADIUS_1,/" 42-13-1411_pre_SIGMA_RADIUS_1.csv job_42-13-1411_wCSV_pre_SIGMA_RADIUS_3: cd $(WORKDIR)/42-13-1411;c3d 42-13-1411_pre_SIGMA_RADIUS_3.nii.gz 42-13-1411_labels.nii.gz -lstat > 42-13-1411_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/42-13-1411;sed -i "1,2d" 42-13-1411_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/42-13-1411;sed "s/\s\+/,/g" 42-13-1411_pre_SIGMA_RADIUS_3.txt > 42-13-1411_pre_SIGMA_RADIUS_3.csv cd $(WORKDIR)/42-13-1411;sed -i "s/^/42-13-1411_pre_SIGMA_RADIUS_3,/" 42-13-1411_pre_SIGMA_RADIUS_3.csv job_42-13-1411_wCSV_pre_SKEWNESS_RADIUS_1: cd $(WORKDIR)/42-13-1411;c3d 42-13-1411_pre_SKEWNESS_RADIUS_1.nii.gz 42-13-1411_labels.nii.gz -lstat > 42-13-1411_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/42-13-1411;sed -i "1,2d" 42-13-1411_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/42-13-1411;sed "s/\s\+/,/g" 42-13-1411_pre_SKEWNESS_RADIUS_1.txt > 42-13-1411_pre_SKEWNESS_RADIUS_1.csv cd $(WORKDIR)/42-13-1411;sed -i "s/^/42-13-1411_pre_SKEWNESS_RADIUS_1,/" 42-13-1411_pre_SKEWNESS_RADIUS_1.csv job_42-13-1411_wCSV_pre_SKEWNESS_RADIUS_3: cd $(WORKDIR)/42-13-1411;c3d 42-13-1411_pre_SKEWNESS_RADIUS_3.nii.gz 42-13-1411_labels.nii.gz -lstat > 42-13-1411_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/42-13-1411;sed -i "1,2d" 42-13-1411_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/42-13-1411;sed "s/\s\+/,/g" 42-13-1411_pre_SKEWNESS_RADIUS_3.txt > 42-13-1411_pre_SKEWNESS_RADIUS_3.csv cd $(WORKDIR)/42-13-1411;sed -i "s/^/42-13-1411_pre_SKEWNESS_RADIUS_3,/" 42-13-1411_pre_SKEWNESS_RADIUS_3.csv job_42-13-1411_wCSV_pre__DIFFERENCE: cd $(WORKDIR)/42-13-1411;c3d 42-13-1411_pre__DIFFERENCE.nii.gz 42-13-1411_labels.nii.gz -lstat > 42-13-1411_pre__DIFFERENCE.txt cd $(WORKDIR)/42-13-1411;sed -i "1,2d" 42-13-1411_pre__DIFFERENCE.txt cd $(WORKDIR)/42-13-1411;sed "s/\s\+/,/g" 42-13-1411_pre__DIFFERENCE.txt > 42-13-1411_pre__DIFFERENCE.csv cd $(WORKDIR)/42-13-1411;sed -i "s/^/42-13-1411_pre__DIFFERENCE,/" 42-13-1411_pre__DIFFERENCE.csv job_43-13-1412_crFI: cd $(WORKDIR)/43-13-1412;c3d 43-13-1412_grey.nii.gz 43-13-1412_labels.nii.gz -copy-transform -o 43-13-1412_labels.nii.gz cd $(WORKDIR)/43-13-1412;c3d 43-13-1412_grey.nii.gz -orient RAI -o 43-13-1412_grey.nii.gz cd $(WORKDIR)/43-13-1412;c3d 43-13-1412_labels.nii.gz -orient RAI -o 43-13-1412_labels.nii.gz cd $(WORKDIR)/43-13-1412;c3d 43-13-1412_labels.nii.gz -binarize -o 43-13-1412_mask.nii.gz cd $(WORKDIR)/43-13-1412;../createFeatureImagesOvary.sh -d 3 -x 43-13-1412_mask.nii.gz -l3 -n pre -a 43-13-1412_grey.nii.gz -f 0x2 -o ./43-13-1412_ -r 1 -r 3 -s 2 -b 4 job_43-13-1412_wCSV_NORMALIZED_DISTANCE: cd $(WORKDIR)/43-13-1412;c3d 43-13-1412_NORMALIZED_DISTANCE.nii.gz 43-13-1412_labels.nii.gz -lstat > 43-13-1412_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/43-13-1412;sed -i "1,2d" 43-13-1412_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/43-13-1412;sed "s/\s\+/,/g" 43-13-1412_NORMALIZED_DISTANCE.txt > 43-13-1412_NORMALIZED_DISTANCE.csv cd $(WORKDIR)/43-13-1412;sed -i "s/^/43-13-1412_NORMALIZED_DISTANCE,/" 43-13-1412_NORMALIZED_DISTANCE.csv job_43-13-1412_wCSV_pre_ATROPOS_GMM: cd $(WORKDIR)/43-13-1412;c3d 43-13-1412_pre_ATROPOS_GMM.nii.gz 43-13-1412_labels.nii.gz -lstat > 43-13-1412_pre_ATROPOS_GMM.txt cd $(WORKDIR)/43-13-1412;sed -i "1,2d" 43-13-1412_pre_ATROPOS_GMM.txt cd $(WORKDIR)/43-13-1412;sed "s/\s\+/,/g" 43-13-1412_pre_ATROPOS_GMM.txt > 43-13-1412_pre_ATROPOS_GMM.csv cd $(WORKDIR)/43-13-1412;sed -i "s/^/43-13-1412_pre_ATROPOS_GMM,/" 43-13-1412_pre_ATROPOS_GMM.csv job_43-13-1412_wCSV_pre_ATROPOS_GMM_ECCENTRICITY: cd $(WORKDIR)/43-13-1412;c3d 43-13-1412_pre_ATROPOS_GMM_ECCENTRICITY.nii.gz 43-13-1412_labels.nii.gz -lstat > 43-13-1412_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/43-13-1412;sed -i "1,2d" 43-13-1412_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/43-13-1412;sed "s/\s\+/,/g" 43-13-1412_pre_ATROPOS_GMM_ECCENTRICITY.txt > 43-13-1412_pre_ATROPOS_GMM_ECCENTRICITY.csv cd $(WORKDIR)/43-13-1412;sed -i "s/^/43-13-1412_pre_ATROPOS_GMM_ECCENTRICITY,/" 43-13-1412_pre_ATROPOS_GMM_ECCENTRICITY.csv job_43-13-1412_wCSV_pre_ATROPOS_GMM_ELONGATION: cd $(WORKDIR)/43-13-1412;c3d 43-13-1412_pre_ATROPOS_GMM_ELONGATION.nii.gz 43-13-1412_labels.nii.gz -lstat > 43-13-1412_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/43-13-1412;sed -i "1,2d" 43-13-1412_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/43-13-1412;sed "s/\s\+/,/g" 43-13-1412_pre_ATROPOS_GMM_ELONGATION.txt > 43-13-1412_pre_ATROPOS_GMM_ELONGATION.csv cd $(WORKDIR)/43-13-1412;sed -i "s/^/43-13-1412_pre_ATROPOS_GMM_ELONGATION,/" 43-13-1412_pre_ATROPOS_GMM_ELONGATION.csv job_43-13-1412_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE: cd $(WORKDIR)/43-13-1412;c3d 43-13-1412_pre_ATROPOS_GMM_LABEL3_DISTANCE.nii.gz 43-13-1412_labels.nii.gz -lstat > 43-13-1412_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/43-13-1412;sed -i "1,2d" 43-13-1412_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/43-13-1412;sed "s/\s\+/,/g" 43-13-1412_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt > 43-13-1412_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv cd $(WORKDIR)/43-13-1412;sed -i "s/^/43-13-1412_pre_ATROPOS_GMM_LABEL3_DISTANCE,/" 43-13-1412_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv job_43-13-1412_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME: cd $(WORKDIR)/43-13-1412;c3d 43-13-1412_pre_ATROPOS_GMM_PHYSICAL_VOLUME.nii.gz 43-13-1412_labels.nii.gz -lstat > 43-13-1412_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/43-13-1412;sed -i "1,2d" 43-13-1412_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/43-13-1412;sed "s/\s\+/,/g" 43-13-1412_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt > 43-13-1412_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv cd $(WORKDIR)/43-13-1412;sed -i "s/^/43-13-1412_pre_ATROPOS_GMM_PHYSICAL_VOLUME,/" 43-13-1412_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv job_43-13-1412_wCSV_pre_ATROPOS_GMM_POSTERIORS1: cd $(WORKDIR)/43-13-1412;c3d 43-13-1412_pre_ATROPOS_GMM_POSTERIORS1.nii.gz 43-13-1412_labels.nii.gz -lstat > 43-13-1412_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/43-13-1412;sed -i "1,2d" 43-13-1412_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/43-13-1412;sed "s/\s\+/,/g" 43-13-1412_pre_ATROPOS_GMM_POSTERIORS1.txt > 43-13-1412_pre_ATROPOS_GMM_POSTERIORS1.csv cd $(WORKDIR)/43-13-1412;sed -i "s/^/43-13-1412_pre_ATROPOS_GMM_POSTERIORS1,/" 43-13-1412_pre_ATROPOS_GMM_POSTERIORS1.csv job_43-13-1412_wCSV_pre_ATROPOS_GMM_POSTERIORS2: cd $(WORKDIR)/43-13-1412;c3d 43-13-1412_pre_ATROPOS_GMM_POSTERIORS2.nii.gz 43-13-1412_labels.nii.gz -lstat > 43-13-1412_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/43-13-1412;sed -i "1,2d" 43-13-1412_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/43-13-1412;sed "s/\s\+/,/g" 43-13-1412_pre_ATROPOS_GMM_POSTERIORS2.txt > 43-13-1412_pre_ATROPOS_GMM_POSTERIORS2.csv cd $(WORKDIR)/43-13-1412;sed -i "s/^/43-13-1412_pre_ATROPOS_GMM_POSTERIORS2,/" 43-13-1412_pre_ATROPOS_GMM_POSTERIORS2.csv job_43-13-1412_wCSV_pre_ATROPOS_GMM_POSTERIORS3: cd $(WORKDIR)/43-13-1412;c3d 43-13-1412_pre_ATROPOS_GMM_POSTERIORS3.nii.gz 43-13-1412_labels.nii.gz -lstat > 43-13-1412_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/43-13-1412;sed -i "1,2d" 43-13-1412_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/43-13-1412;sed "s/\s\+/,/g" 43-13-1412_pre_ATROPOS_GMM_POSTERIORS3.txt > 43-13-1412_pre_ATROPOS_GMM_POSTERIORS3.csv cd $(WORKDIR)/43-13-1412;sed -i "s/^/43-13-1412_pre_ATROPOS_GMM_POSTERIORS3,/" 43-13-1412_pre_ATROPOS_GMM_POSTERIORS3.csv job_43-13-1412_wCSV_pre_ATROPOS_GMM_POSTERIORS4: cd $(WORKDIR)/43-13-1412;c3d 43-13-1412_pre_ATROPOS_GMM_POSTERIORS4.nii.gz 43-13-1412_labels.nii.gz -lstat > 43-13-1412_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/43-13-1412;sed -i "1,2d" 43-13-1412_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/43-13-1412;sed "s/\s\+/,/g" 43-13-1412_pre_ATROPOS_GMM_POSTERIORS4.txt > 43-13-1412_pre_ATROPOS_GMM_POSTERIORS4.csv cd $(WORKDIR)/43-13-1412;sed -i "s/^/43-13-1412_pre_ATROPOS_GMM_POSTERIORS4,/" 43-13-1412_pre_ATROPOS_GMM_POSTERIORS4.csv job_43-13-1412_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO: cd $(WORKDIR)/43-13-1412;c3d 43-13-1412_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.nii.gz 43-13-1412_labels.nii.gz -lstat > 43-13-1412_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/43-13-1412;sed -i "1,2d" 43-13-1412_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/43-13-1412;sed "s/\s\+/,/g" 43-13-1412_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt > 43-13-1412_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv cd $(WORKDIR)/43-13-1412;sed -i "s/^/43-13-1412_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO,/" 43-13-1412_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv job_43-13-1412_wCSV_pre_ENTROPY_RADIUS_1: cd $(WORKDIR)/43-13-1412;c3d 43-13-1412_pre_ENTROPY_RADIUS_1.nii.gz 43-13-1412_labels.nii.gz -lstat > 43-13-1412_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/43-13-1412;sed -i "1,2d" 43-13-1412_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/43-13-1412;sed "s/\s\+/,/g" 43-13-1412_pre_ENTROPY_RADIUS_1.txt > 43-13-1412_pre_ENTROPY_RADIUS_1.csv cd $(WORKDIR)/43-13-1412;sed -i "s/^/43-13-1412_pre_ENTROPY_RADIUS_1,/" 43-13-1412_pre_ENTROPY_RADIUS_1.csv job_43-13-1412_wCSV_pre_ENTROPY_RADIUS_3: cd $(WORKDIR)/43-13-1412;c3d 43-13-1412_pre_ENTROPY_RADIUS_3.nii.gz 43-13-1412_labels.nii.gz -lstat > 43-13-1412_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/43-13-1412;sed -i "1,2d" 43-13-1412_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/43-13-1412;sed "s/\s\+/,/g" 43-13-1412_pre_ENTROPY_RADIUS_3.txt > 43-13-1412_pre_ENTROPY_RADIUS_3.csv cd $(WORKDIR)/43-13-1412;sed -i "s/^/43-13-1412_pre_ENTROPY_RADIUS_3,/" 43-13-1412_pre_ENTROPY_RADIUS_3.csv job_43-13-1412_wCSV_pre_MEAN_RADIUS_1: cd $(WORKDIR)/43-13-1412;c3d 43-13-1412_pre_MEAN_RADIUS_1.nii.gz 43-13-1412_labels.nii.gz -lstat > 43-13-1412_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/43-13-1412;sed -i "1,2d" 43-13-1412_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/43-13-1412;sed "s/\s\+/,/g" 43-13-1412_pre_MEAN_RADIUS_1.txt > 43-13-1412_pre_MEAN_RADIUS_1.csv cd $(WORKDIR)/43-13-1412;sed -i "s/^/43-13-1412_pre_MEAN_RADIUS_1,/" 43-13-1412_pre_MEAN_RADIUS_1.csv job_43-13-1412_wCSV_pre_MEAN_RADIUS_3: cd $(WORKDIR)/43-13-1412;c3d 43-13-1412_pre_MEAN_RADIUS_3.nii.gz 43-13-1412_labels.nii.gz -lstat > 43-13-1412_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/43-13-1412;sed -i "1,2d" 43-13-1412_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/43-13-1412;sed "s/\s\+/,/g" 43-13-1412_pre_MEAN_RADIUS_3.txt > 43-13-1412_pre_MEAN_RADIUS_3.csv cd $(WORKDIR)/43-13-1412;sed -i "s/^/43-13-1412_pre_MEAN_RADIUS_3,/" 43-13-1412_pre_MEAN_RADIUS_3.csv job_43-13-1412_wCSV_pre_NORMALIZED: cd $(WORKDIR)/43-13-1412;c3d 43-13-1412_pre_NORMALIZED.nii.gz 43-13-1412_labels.nii.gz -lstat > 43-13-1412_pre_NORMALIZED.txt cd $(WORKDIR)/43-13-1412;sed -i "1,2d" 43-13-1412_pre_NORMALIZED.txt cd $(WORKDIR)/43-13-1412;sed "s/\s\+/,/g" 43-13-1412_pre_NORMALIZED.txt > 43-13-1412_pre_NORMALIZED.csv cd $(WORKDIR)/43-13-1412;sed -i "s/^/43-13-1412_pre_NORMALIZED,/" 43-13-1412_pre_NORMALIZED.csv job_43-13-1412_wCSV_pre_SIGMA_RADIUS_1: cd $(WORKDIR)/43-13-1412;c3d 43-13-1412_pre_SIGMA_RADIUS_1.nii.gz 43-13-1412_labels.nii.gz -lstat > 43-13-1412_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/43-13-1412;sed -i "1,2d" 43-13-1412_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/43-13-1412;sed "s/\s\+/,/g" 43-13-1412_pre_SIGMA_RADIUS_1.txt > 43-13-1412_pre_SIGMA_RADIUS_1.csv cd $(WORKDIR)/43-13-1412;sed -i "s/^/43-13-1412_pre_SIGMA_RADIUS_1,/" 43-13-1412_pre_SIGMA_RADIUS_1.csv job_43-13-1412_wCSV_pre_SIGMA_RADIUS_3: cd $(WORKDIR)/43-13-1412;c3d 43-13-1412_pre_SIGMA_RADIUS_3.nii.gz 43-13-1412_labels.nii.gz -lstat > 43-13-1412_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/43-13-1412;sed -i "1,2d" 43-13-1412_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/43-13-1412;sed "s/\s\+/,/g" 43-13-1412_pre_SIGMA_RADIUS_3.txt > 43-13-1412_pre_SIGMA_RADIUS_3.csv cd $(WORKDIR)/43-13-1412;sed -i "s/^/43-13-1412_pre_SIGMA_RADIUS_3,/" 43-13-1412_pre_SIGMA_RADIUS_3.csv job_43-13-1412_wCSV_pre_SKEWNESS_RADIUS_1: cd $(WORKDIR)/43-13-1412;c3d 43-13-1412_pre_SKEWNESS_RADIUS_1.nii.gz 43-13-1412_labels.nii.gz -lstat > 43-13-1412_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/43-13-1412;sed -i "1,2d" 43-13-1412_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/43-13-1412;sed "s/\s\+/,/g" 43-13-1412_pre_SKEWNESS_RADIUS_1.txt > 43-13-1412_pre_SKEWNESS_RADIUS_1.csv cd $(WORKDIR)/43-13-1412;sed -i "s/^/43-13-1412_pre_SKEWNESS_RADIUS_1,/" 43-13-1412_pre_SKEWNESS_RADIUS_1.csv job_43-13-1412_wCSV_pre_SKEWNESS_RADIUS_3: cd $(WORKDIR)/43-13-1412;c3d 43-13-1412_pre_SKEWNESS_RADIUS_3.nii.gz 43-13-1412_labels.nii.gz -lstat > 43-13-1412_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/43-13-1412;sed -i "1,2d" 43-13-1412_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/43-13-1412;sed "s/\s\+/,/g" 43-13-1412_pre_SKEWNESS_RADIUS_3.txt > 43-13-1412_pre_SKEWNESS_RADIUS_3.csv cd $(WORKDIR)/43-13-1412;sed -i "s/^/43-13-1412_pre_SKEWNESS_RADIUS_3,/" 43-13-1412_pre_SKEWNESS_RADIUS_3.csv job_43-13-1412_wCSV_pre__DIFFERENCE: cd $(WORKDIR)/43-13-1412;c3d 43-13-1412_pre__DIFFERENCE.nii.gz 43-13-1412_labels.nii.gz -lstat > 43-13-1412_pre__DIFFERENCE.txt cd $(WORKDIR)/43-13-1412;sed -i "1,2d" 43-13-1412_pre__DIFFERENCE.txt cd $(WORKDIR)/43-13-1412;sed "s/\s\+/,/g" 43-13-1412_pre__DIFFERENCE.txt > 43-13-1412_pre__DIFFERENCE.csv cd $(WORKDIR)/43-13-1412;sed -i "s/^/43-13-1412_pre__DIFFERENCE,/" 43-13-1412_pre__DIFFERENCE.csv job_44-13-1488_crFI: cd $(WORKDIR)/44-13-1488;c3d 44-13-1488_grey.nii.gz 44-13-1488_labels.nii.gz -copy-transform -o 44-13-1488_labels.nii.gz cd $(WORKDIR)/44-13-1488;c3d 44-13-1488_grey.nii.gz -orient RAI -o 44-13-1488_grey.nii.gz cd $(WORKDIR)/44-13-1488;c3d 44-13-1488_labels.nii.gz -orient RAI -o 44-13-1488_labels.nii.gz cd $(WORKDIR)/44-13-1488;c3d 44-13-1488_labels.nii.gz -binarize -o 44-13-1488_mask.nii.gz cd $(WORKDIR)/44-13-1488;../createFeatureImagesOvary.sh -d 3 -x 44-13-1488_mask.nii.gz -l3 -n pre -a 44-13-1488_grey.nii.gz -f 0x2 -o ./44-13-1488_ -r 1 -r 3 -s 2 -b 4 job_44-13-1488_wCSV_NORMALIZED_DISTANCE: cd $(WORKDIR)/44-13-1488;c3d 44-13-1488_NORMALIZED_DISTANCE.nii.gz 44-13-1488_labels.nii.gz -lstat > 44-13-1488_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/44-13-1488;sed -i "1,2d" 44-13-1488_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/44-13-1488;sed "s/\s\+/,/g" 44-13-1488_NORMALIZED_DISTANCE.txt > 44-13-1488_NORMALIZED_DISTANCE.csv cd $(WORKDIR)/44-13-1488;sed -i "s/^/44-13-1488_NORMALIZED_DISTANCE,/" 44-13-1488_NORMALIZED_DISTANCE.csv job_44-13-1488_wCSV_pre_ATROPOS_GMM: cd $(WORKDIR)/44-13-1488;c3d 44-13-1488_pre_ATROPOS_GMM.nii.gz 44-13-1488_labels.nii.gz -lstat > 44-13-1488_pre_ATROPOS_GMM.txt cd $(WORKDIR)/44-13-1488;sed -i "1,2d" 44-13-1488_pre_ATROPOS_GMM.txt cd $(WORKDIR)/44-13-1488;sed "s/\s\+/,/g" 44-13-1488_pre_ATROPOS_GMM.txt > 44-13-1488_pre_ATROPOS_GMM.csv cd $(WORKDIR)/44-13-1488;sed -i "s/^/44-13-1488_pre_ATROPOS_GMM,/" 44-13-1488_pre_ATROPOS_GMM.csv job_44-13-1488_wCSV_pre_ATROPOS_GMM_ECCENTRICITY: cd $(WORKDIR)/44-13-1488;c3d 44-13-1488_pre_ATROPOS_GMM_ECCENTRICITY.nii.gz 44-13-1488_labels.nii.gz -lstat > 44-13-1488_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/44-13-1488;sed -i "1,2d" 44-13-1488_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/44-13-1488;sed "s/\s\+/,/g" 44-13-1488_pre_ATROPOS_GMM_ECCENTRICITY.txt > 44-13-1488_pre_ATROPOS_GMM_ECCENTRICITY.csv cd $(WORKDIR)/44-13-1488;sed -i "s/^/44-13-1488_pre_ATROPOS_GMM_ECCENTRICITY,/" 44-13-1488_pre_ATROPOS_GMM_ECCENTRICITY.csv job_44-13-1488_wCSV_pre_ATROPOS_GMM_ELONGATION: cd $(WORKDIR)/44-13-1488;c3d 44-13-1488_pre_ATROPOS_GMM_ELONGATION.nii.gz 44-13-1488_labels.nii.gz -lstat > 44-13-1488_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/44-13-1488;sed -i "1,2d" 44-13-1488_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/44-13-1488;sed "s/\s\+/,/g" 44-13-1488_pre_ATROPOS_GMM_ELONGATION.txt > 44-13-1488_pre_ATROPOS_GMM_ELONGATION.csv cd $(WORKDIR)/44-13-1488;sed -i "s/^/44-13-1488_pre_ATROPOS_GMM_ELONGATION,/" 44-13-1488_pre_ATROPOS_GMM_ELONGATION.csv job_44-13-1488_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE: cd $(WORKDIR)/44-13-1488;c3d 44-13-1488_pre_ATROPOS_GMM_LABEL3_DISTANCE.nii.gz 44-13-1488_labels.nii.gz -lstat > 44-13-1488_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/44-13-1488;sed -i "1,2d" 44-13-1488_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/44-13-1488;sed "s/\s\+/,/g" 44-13-1488_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt > 44-13-1488_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv cd $(WORKDIR)/44-13-1488;sed -i "s/^/44-13-1488_pre_ATROPOS_GMM_LABEL3_DISTANCE,/" 44-13-1488_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv job_44-13-1488_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME: cd $(WORKDIR)/44-13-1488;c3d 44-13-1488_pre_ATROPOS_GMM_PHYSICAL_VOLUME.nii.gz 44-13-1488_labels.nii.gz -lstat > 44-13-1488_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/44-13-1488;sed -i "1,2d" 44-13-1488_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/44-13-1488;sed "s/\s\+/,/g" 44-13-1488_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt > 44-13-1488_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv cd $(WORKDIR)/44-13-1488;sed -i "s/^/44-13-1488_pre_ATROPOS_GMM_PHYSICAL_VOLUME,/" 44-13-1488_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv job_44-13-1488_wCSV_pre_ATROPOS_GMM_POSTERIORS1: cd $(WORKDIR)/44-13-1488;c3d 44-13-1488_pre_ATROPOS_GMM_POSTERIORS1.nii.gz 44-13-1488_labels.nii.gz -lstat > 44-13-1488_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/44-13-1488;sed -i "1,2d" 44-13-1488_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/44-13-1488;sed "s/\s\+/,/g" 44-13-1488_pre_ATROPOS_GMM_POSTERIORS1.txt > 44-13-1488_pre_ATROPOS_GMM_POSTERIORS1.csv cd $(WORKDIR)/44-13-1488;sed -i "s/^/44-13-1488_pre_ATROPOS_GMM_POSTERIORS1,/" 44-13-1488_pre_ATROPOS_GMM_POSTERIORS1.csv job_44-13-1488_wCSV_pre_ATROPOS_GMM_POSTERIORS2: cd $(WORKDIR)/44-13-1488;c3d 44-13-1488_pre_ATROPOS_GMM_POSTERIORS2.nii.gz 44-13-1488_labels.nii.gz -lstat > 44-13-1488_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/44-13-1488;sed -i "1,2d" 44-13-1488_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/44-13-1488;sed "s/\s\+/,/g" 44-13-1488_pre_ATROPOS_GMM_POSTERIORS2.txt > 44-13-1488_pre_ATROPOS_GMM_POSTERIORS2.csv cd $(WORKDIR)/44-13-1488;sed -i "s/^/44-13-1488_pre_ATROPOS_GMM_POSTERIORS2,/" 44-13-1488_pre_ATROPOS_GMM_POSTERIORS2.csv job_44-13-1488_wCSV_pre_ATROPOS_GMM_POSTERIORS3: cd $(WORKDIR)/44-13-1488;c3d 44-13-1488_pre_ATROPOS_GMM_POSTERIORS3.nii.gz 44-13-1488_labels.nii.gz -lstat > 44-13-1488_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/44-13-1488;sed -i "1,2d" 44-13-1488_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/44-13-1488;sed "s/\s\+/,/g" 44-13-1488_pre_ATROPOS_GMM_POSTERIORS3.txt > 44-13-1488_pre_ATROPOS_GMM_POSTERIORS3.csv cd $(WORKDIR)/44-13-1488;sed -i "s/^/44-13-1488_pre_ATROPOS_GMM_POSTERIORS3,/" 44-13-1488_pre_ATROPOS_GMM_POSTERIORS3.csv job_44-13-1488_wCSV_pre_ATROPOS_GMM_POSTERIORS4: cd $(WORKDIR)/44-13-1488;c3d 44-13-1488_pre_ATROPOS_GMM_POSTERIORS4.nii.gz 44-13-1488_labels.nii.gz -lstat > 44-13-1488_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/44-13-1488;sed -i "1,2d" 44-13-1488_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/44-13-1488;sed "s/\s\+/,/g" 44-13-1488_pre_ATROPOS_GMM_POSTERIORS4.txt > 44-13-1488_pre_ATROPOS_GMM_POSTERIORS4.csv cd $(WORKDIR)/44-13-1488;sed -i "s/^/44-13-1488_pre_ATROPOS_GMM_POSTERIORS4,/" 44-13-1488_pre_ATROPOS_GMM_POSTERIORS4.csv job_44-13-1488_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO: cd $(WORKDIR)/44-13-1488;c3d 44-13-1488_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.nii.gz 44-13-1488_labels.nii.gz -lstat > 44-13-1488_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/44-13-1488;sed -i "1,2d" 44-13-1488_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/44-13-1488;sed "s/\s\+/,/g" 44-13-1488_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt > 44-13-1488_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv cd $(WORKDIR)/44-13-1488;sed -i "s/^/44-13-1488_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO,/" 44-13-1488_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv job_44-13-1488_wCSV_pre_ENTROPY_RADIUS_1: cd $(WORKDIR)/44-13-1488;c3d 44-13-1488_pre_ENTROPY_RADIUS_1.nii.gz 44-13-1488_labels.nii.gz -lstat > 44-13-1488_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/44-13-1488;sed -i "1,2d" 44-13-1488_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/44-13-1488;sed "s/\s\+/,/g" 44-13-1488_pre_ENTROPY_RADIUS_1.txt > 44-13-1488_pre_ENTROPY_RADIUS_1.csv cd $(WORKDIR)/44-13-1488;sed -i "s/^/44-13-1488_pre_ENTROPY_RADIUS_1,/" 44-13-1488_pre_ENTROPY_RADIUS_1.csv job_44-13-1488_wCSV_pre_ENTROPY_RADIUS_3: cd $(WORKDIR)/44-13-1488;c3d 44-13-1488_pre_ENTROPY_RADIUS_3.nii.gz 44-13-1488_labels.nii.gz -lstat > 44-13-1488_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/44-13-1488;sed -i "1,2d" 44-13-1488_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/44-13-1488;sed "s/\s\+/,/g" 44-13-1488_pre_ENTROPY_RADIUS_3.txt > 44-13-1488_pre_ENTROPY_RADIUS_3.csv cd $(WORKDIR)/44-13-1488;sed -i "s/^/44-13-1488_pre_ENTROPY_RADIUS_3,/" 44-13-1488_pre_ENTROPY_RADIUS_3.csv job_44-13-1488_wCSV_pre_MEAN_RADIUS_1: cd $(WORKDIR)/44-13-1488;c3d 44-13-1488_pre_MEAN_RADIUS_1.nii.gz 44-13-1488_labels.nii.gz -lstat > 44-13-1488_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/44-13-1488;sed -i "1,2d" 44-13-1488_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/44-13-1488;sed "s/\s\+/,/g" 44-13-1488_pre_MEAN_RADIUS_1.txt > 44-13-1488_pre_MEAN_RADIUS_1.csv cd $(WORKDIR)/44-13-1488;sed -i "s/^/44-13-1488_pre_MEAN_RADIUS_1,/" 44-13-1488_pre_MEAN_RADIUS_1.csv job_44-13-1488_wCSV_pre_MEAN_RADIUS_3: cd $(WORKDIR)/44-13-1488;c3d 44-13-1488_pre_MEAN_RADIUS_3.nii.gz 44-13-1488_labels.nii.gz -lstat > 44-13-1488_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/44-13-1488;sed -i "1,2d" 44-13-1488_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/44-13-1488;sed "s/\s\+/,/g" 44-13-1488_pre_MEAN_RADIUS_3.txt > 44-13-1488_pre_MEAN_RADIUS_3.csv cd $(WORKDIR)/44-13-1488;sed -i "s/^/44-13-1488_pre_MEAN_RADIUS_3,/" 44-13-1488_pre_MEAN_RADIUS_3.csv job_44-13-1488_wCSV_pre_NORMALIZED: cd $(WORKDIR)/44-13-1488;c3d 44-13-1488_pre_NORMALIZED.nii.gz 44-13-1488_labels.nii.gz -lstat > 44-13-1488_pre_NORMALIZED.txt cd $(WORKDIR)/44-13-1488;sed -i "1,2d" 44-13-1488_pre_NORMALIZED.txt cd $(WORKDIR)/44-13-1488;sed "s/\s\+/,/g" 44-13-1488_pre_NORMALIZED.txt > 44-13-1488_pre_NORMALIZED.csv cd $(WORKDIR)/44-13-1488;sed -i "s/^/44-13-1488_pre_NORMALIZED,/" 44-13-1488_pre_NORMALIZED.csv job_44-13-1488_wCSV_pre_SIGMA_RADIUS_1: cd $(WORKDIR)/44-13-1488;c3d 44-13-1488_pre_SIGMA_RADIUS_1.nii.gz 44-13-1488_labels.nii.gz -lstat > 44-13-1488_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/44-13-1488;sed -i "1,2d" 44-13-1488_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/44-13-1488;sed "s/\s\+/,/g" 44-13-1488_pre_SIGMA_RADIUS_1.txt > 44-13-1488_pre_SIGMA_RADIUS_1.csv cd $(WORKDIR)/44-13-1488;sed -i "s/^/44-13-1488_pre_SIGMA_RADIUS_1,/" 44-13-1488_pre_SIGMA_RADIUS_1.csv job_44-13-1488_wCSV_pre_SIGMA_RADIUS_3: cd $(WORKDIR)/44-13-1488;c3d 44-13-1488_pre_SIGMA_RADIUS_3.nii.gz 44-13-1488_labels.nii.gz -lstat > 44-13-1488_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/44-13-1488;sed -i "1,2d" 44-13-1488_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/44-13-1488;sed "s/\s\+/,/g" 44-13-1488_pre_SIGMA_RADIUS_3.txt > 44-13-1488_pre_SIGMA_RADIUS_3.csv cd $(WORKDIR)/44-13-1488;sed -i "s/^/44-13-1488_pre_SIGMA_RADIUS_3,/" 44-13-1488_pre_SIGMA_RADIUS_3.csv job_44-13-1488_wCSV_pre_SKEWNESS_RADIUS_1: cd $(WORKDIR)/44-13-1488;c3d 44-13-1488_pre_SKEWNESS_RADIUS_1.nii.gz 44-13-1488_labels.nii.gz -lstat > 44-13-1488_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/44-13-1488;sed -i "1,2d" 44-13-1488_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/44-13-1488;sed "s/\s\+/,/g" 44-13-1488_pre_SKEWNESS_RADIUS_1.txt > 44-13-1488_pre_SKEWNESS_RADIUS_1.csv cd $(WORKDIR)/44-13-1488;sed -i "s/^/44-13-1488_pre_SKEWNESS_RADIUS_1,/" 44-13-1488_pre_SKEWNESS_RADIUS_1.csv job_44-13-1488_wCSV_pre_SKEWNESS_RADIUS_3: cd $(WORKDIR)/44-13-1488;c3d 44-13-1488_pre_SKEWNESS_RADIUS_3.nii.gz 44-13-1488_labels.nii.gz -lstat > 44-13-1488_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/44-13-1488;sed -i "1,2d" 44-13-1488_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/44-13-1488;sed "s/\s\+/,/g" 44-13-1488_pre_SKEWNESS_RADIUS_3.txt > 44-13-1488_pre_SKEWNESS_RADIUS_3.csv cd $(WORKDIR)/44-13-1488;sed -i "s/^/44-13-1488_pre_SKEWNESS_RADIUS_3,/" 44-13-1488_pre_SKEWNESS_RADIUS_3.csv job_44-13-1488_wCSV_pre__DIFFERENCE: cd $(WORKDIR)/44-13-1488;c3d 44-13-1488_pre__DIFFERENCE.nii.gz 44-13-1488_labels.nii.gz -lstat > 44-13-1488_pre__DIFFERENCE.txt cd $(WORKDIR)/44-13-1488;sed -i "1,2d" 44-13-1488_pre__DIFFERENCE.txt cd $(WORKDIR)/44-13-1488;sed "s/\s\+/,/g" 44-13-1488_pre__DIFFERENCE.txt > 44-13-1488_pre__DIFFERENCE.csv cd $(WORKDIR)/44-13-1488;sed -i "s/^/44-13-1488_pre__DIFFERENCE,/" 44-13-1488_pre__DIFFERENCE.csv job_45-13-1495_crFI: cd $(WORKDIR)/45-13-1495;c3d 45-13-1495_grey.nii.gz 45-13-1495_labels.nii.gz -copy-transform -o 45-13-1495_labels.nii.gz cd $(WORKDIR)/45-13-1495;c3d 45-13-1495_grey.nii.gz -orient RAI -o 45-13-1495_grey.nii.gz cd $(WORKDIR)/45-13-1495;c3d 45-13-1495_labels.nii.gz -orient RAI -o 45-13-1495_labels.nii.gz cd $(WORKDIR)/45-13-1495;c3d 45-13-1495_labels.nii.gz -binarize -o 45-13-1495_mask.nii.gz cd $(WORKDIR)/45-13-1495;../createFeatureImagesOvary.sh -d 3 -x 45-13-1495_mask.nii.gz -l3 -n pre -a 45-13-1495_grey.nii.gz -f 0x2 -o ./45-13-1495_ -r 1 -r 3 -s 2 -b 4 job_45-13-1495_wCSV_NORMALIZED_DISTANCE: cd $(WORKDIR)/45-13-1495;c3d 45-13-1495_NORMALIZED_DISTANCE.nii.gz 45-13-1495_labels.nii.gz -lstat > 45-13-1495_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/45-13-1495;sed -i "1,2d" 45-13-1495_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/45-13-1495;sed "s/\s\+/,/g" 45-13-1495_NORMALIZED_DISTANCE.txt > 45-13-1495_NORMALIZED_DISTANCE.csv cd $(WORKDIR)/45-13-1495;sed -i "s/^/45-13-1495_NORMALIZED_DISTANCE,/" 45-13-1495_NORMALIZED_DISTANCE.csv job_45-13-1495_wCSV_pre_ATROPOS_GMM: cd $(WORKDIR)/45-13-1495;c3d 45-13-1495_pre_ATROPOS_GMM.nii.gz 45-13-1495_labels.nii.gz -lstat > 45-13-1495_pre_ATROPOS_GMM.txt cd $(WORKDIR)/45-13-1495;sed -i "1,2d" 45-13-1495_pre_ATROPOS_GMM.txt cd $(WORKDIR)/45-13-1495;sed "s/\s\+/,/g" 45-13-1495_pre_ATROPOS_GMM.txt > 45-13-1495_pre_ATROPOS_GMM.csv cd $(WORKDIR)/45-13-1495;sed -i "s/^/45-13-1495_pre_ATROPOS_GMM,/" 45-13-1495_pre_ATROPOS_GMM.csv job_45-13-1495_wCSV_pre_ATROPOS_GMM_ECCENTRICITY: cd $(WORKDIR)/45-13-1495;c3d 45-13-1495_pre_ATROPOS_GMM_ECCENTRICITY.nii.gz 45-13-1495_labels.nii.gz -lstat > 45-13-1495_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/45-13-1495;sed -i "1,2d" 45-13-1495_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/45-13-1495;sed "s/\s\+/,/g" 45-13-1495_pre_ATROPOS_GMM_ECCENTRICITY.txt > 45-13-1495_pre_ATROPOS_GMM_ECCENTRICITY.csv cd $(WORKDIR)/45-13-1495;sed -i "s/^/45-13-1495_pre_ATROPOS_GMM_ECCENTRICITY,/" 45-13-1495_pre_ATROPOS_GMM_ECCENTRICITY.csv job_45-13-1495_wCSV_pre_ATROPOS_GMM_ELONGATION: cd $(WORKDIR)/45-13-1495;c3d 45-13-1495_pre_ATROPOS_GMM_ELONGATION.nii.gz 45-13-1495_labels.nii.gz -lstat > 45-13-1495_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/45-13-1495;sed -i "1,2d" 45-13-1495_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/45-13-1495;sed "s/\s\+/,/g" 45-13-1495_pre_ATROPOS_GMM_ELONGATION.txt > 45-13-1495_pre_ATROPOS_GMM_ELONGATION.csv cd $(WORKDIR)/45-13-1495;sed -i "s/^/45-13-1495_pre_ATROPOS_GMM_ELONGATION,/" 45-13-1495_pre_ATROPOS_GMM_ELONGATION.csv job_45-13-1495_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE: cd $(WORKDIR)/45-13-1495;c3d 45-13-1495_pre_ATROPOS_GMM_LABEL3_DISTANCE.nii.gz 45-13-1495_labels.nii.gz -lstat > 45-13-1495_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/45-13-1495;sed -i "1,2d" 45-13-1495_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/45-13-1495;sed "s/\s\+/,/g" 45-13-1495_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt > 45-13-1495_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv cd $(WORKDIR)/45-13-1495;sed -i "s/^/45-13-1495_pre_ATROPOS_GMM_LABEL3_DISTANCE,/" 45-13-1495_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv job_45-13-1495_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME: cd $(WORKDIR)/45-13-1495;c3d 45-13-1495_pre_ATROPOS_GMM_PHYSICAL_VOLUME.nii.gz 45-13-1495_labels.nii.gz -lstat > 45-13-1495_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/45-13-1495;sed -i "1,2d" 45-13-1495_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/45-13-1495;sed "s/\s\+/,/g" 45-13-1495_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt > 45-13-1495_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv cd $(WORKDIR)/45-13-1495;sed -i "s/^/45-13-1495_pre_ATROPOS_GMM_PHYSICAL_VOLUME,/" 45-13-1495_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv job_45-13-1495_wCSV_pre_ATROPOS_GMM_POSTERIORS1: cd $(WORKDIR)/45-13-1495;c3d 45-13-1495_pre_ATROPOS_GMM_POSTERIORS1.nii.gz 45-13-1495_labels.nii.gz -lstat > 45-13-1495_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/45-13-1495;sed -i "1,2d" 45-13-1495_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/45-13-1495;sed "s/\s\+/,/g" 45-13-1495_pre_ATROPOS_GMM_POSTERIORS1.txt > 45-13-1495_pre_ATROPOS_GMM_POSTERIORS1.csv cd $(WORKDIR)/45-13-1495;sed -i "s/^/45-13-1495_pre_ATROPOS_GMM_POSTERIORS1,/" 45-13-1495_pre_ATROPOS_GMM_POSTERIORS1.csv job_45-13-1495_wCSV_pre_ATROPOS_GMM_POSTERIORS2: cd $(WORKDIR)/45-13-1495;c3d 45-13-1495_pre_ATROPOS_GMM_POSTERIORS2.nii.gz 45-13-1495_labels.nii.gz -lstat > 45-13-1495_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/45-13-1495;sed -i "1,2d" 45-13-1495_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/45-13-1495;sed "s/\s\+/,/g" 45-13-1495_pre_ATROPOS_GMM_POSTERIORS2.txt > 45-13-1495_pre_ATROPOS_GMM_POSTERIORS2.csv cd $(WORKDIR)/45-13-1495;sed -i "s/^/45-13-1495_pre_ATROPOS_GMM_POSTERIORS2,/" 45-13-1495_pre_ATROPOS_GMM_POSTERIORS2.csv job_45-13-1495_wCSV_pre_ATROPOS_GMM_POSTERIORS3: cd $(WORKDIR)/45-13-1495;c3d 45-13-1495_pre_ATROPOS_GMM_POSTERIORS3.nii.gz 45-13-1495_labels.nii.gz -lstat > 45-13-1495_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/45-13-1495;sed -i "1,2d" 45-13-1495_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/45-13-1495;sed "s/\s\+/,/g" 45-13-1495_pre_ATROPOS_GMM_POSTERIORS3.txt > 45-13-1495_pre_ATROPOS_GMM_POSTERIORS3.csv cd $(WORKDIR)/45-13-1495;sed -i "s/^/45-13-1495_pre_ATROPOS_GMM_POSTERIORS3,/" 45-13-1495_pre_ATROPOS_GMM_POSTERIORS3.csv job_45-13-1495_wCSV_pre_ATROPOS_GMM_POSTERIORS4: cd $(WORKDIR)/45-13-1495;c3d 45-13-1495_pre_ATROPOS_GMM_POSTERIORS4.nii.gz 45-13-1495_labels.nii.gz -lstat > 45-13-1495_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/45-13-1495;sed -i "1,2d" 45-13-1495_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/45-13-1495;sed "s/\s\+/,/g" 45-13-1495_pre_ATROPOS_GMM_POSTERIORS4.txt > 45-13-1495_pre_ATROPOS_GMM_POSTERIORS4.csv cd $(WORKDIR)/45-13-1495;sed -i "s/^/45-13-1495_pre_ATROPOS_GMM_POSTERIORS4,/" 45-13-1495_pre_ATROPOS_GMM_POSTERIORS4.csv job_45-13-1495_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO: cd $(WORKDIR)/45-13-1495;c3d 45-13-1495_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.nii.gz 45-13-1495_labels.nii.gz -lstat > 45-13-1495_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/45-13-1495;sed -i "1,2d" 45-13-1495_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/45-13-1495;sed "s/\s\+/,/g" 45-13-1495_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt > 45-13-1495_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv cd $(WORKDIR)/45-13-1495;sed -i "s/^/45-13-1495_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO,/" 45-13-1495_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv job_45-13-1495_wCSV_pre_ENTROPY_RADIUS_1: cd $(WORKDIR)/45-13-1495;c3d 45-13-1495_pre_ENTROPY_RADIUS_1.nii.gz 45-13-1495_labels.nii.gz -lstat > 45-13-1495_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/45-13-1495;sed -i "1,2d" 45-13-1495_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/45-13-1495;sed "s/\s\+/,/g" 45-13-1495_pre_ENTROPY_RADIUS_1.txt > 45-13-1495_pre_ENTROPY_RADIUS_1.csv cd $(WORKDIR)/45-13-1495;sed -i "s/^/45-13-1495_pre_ENTROPY_RADIUS_1,/" 45-13-1495_pre_ENTROPY_RADIUS_1.csv job_45-13-1495_wCSV_pre_ENTROPY_RADIUS_3: cd $(WORKDIR)/45-13-1495;c3d 45-13-1495_pre_ENTROPY_RADIUS_3.nii.gz 45-13-1495_labels.nii.gz -lstat > 45-13-1495_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/45-13-1495;sed -i "1,2d" 45-13-1495_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/45-13-1495;sed "s/\s\+/,/g" 45-13-1495_pre_ENTROPY_RADIUS_3.txt > 45-13-1495_pre_ENTROPY_RADIUS_3.csv cd $(WORKDIR)/45-13-1495;sed -i "s/^/45-13-1495_pre_ENTROPY_RADIUS_3,/" 45-13-1495_pre_ENTROPY_RADIUS_3.csv job_45-13-1495_wCSV_pre_MEAN_RADIUS_1: cd $(WORKDIR)/45-13-1495;c3d 45-13-1495_pre_MEAN_RADIUS_1.nii.gz 45-13-1495_labels.nii.gz -lstat > 45-13-1495_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/45-13-1495;sed -i "1,2d" 45-13-1495_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/45-13-1495;sed "s/\s\+/,/g" 45-13-1495_pre_MEAN_RADIUS_1.txt > 45-13-1495_pre_MEAN_RADIUS_1.csv cd $(WORKDIR)/45-13-1495;sed -i "s/^/45-13-1495_pre_MEAN_RADIUS_1,/" 45-13-1495_pre_MEAN_RADIUS_1.csv job_45-13-1495_wCSV_pre_MEAN_RADIUS_3: cd $(WORKDIR)/45-13-1495;c3d 45-13-1495_pre_MEAN_RADIUS_3.nii.gz 45-13-1495_labels.nii.gz -lstat > 45-13-1495_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/45-13-1495;sed -i "1,2d" 45-13-1495_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/45-13-1495;sed "s/\s\+/,/g" 45-13-1495_pre_MEAN_RADIUS_3.txt > 45-13-1495_pre_MEAN_RADIUS_3.csv cd $(WORKDIR)/45-13-1495;sed -i "s/^/45-13-1495_pre_MEAN_RADIUS_3,/" 45-13-1495_pre_MEAN_RADIUS_3.csv job_45-13-1495_wCSV_pre_NORMALIZED: cd $(WORKDIR)/45-13-1495;c3d 45-13-1495_pre_NORMALIZED.nii.gz 45-13-1495_labels.nii.gz -lstat > 45-13-1495_pre_NORMALIZED.txt cd $(WORKDIR)/45-13-1495;sed -i "1,2d" 45-13-1495_pre_NORMALIZED.txt cd $(WORKDIR)/45-13-1495;sed "s/\s\+/,/g" 45-13-1495_pre_NORMALIZED.txt > 45-13-1495_pre_NORMALIZED.csv cd $(WORKDIR)/45-13-1495;sed -i "s/^/45-13-1495_pre_NORMALIZED,/" 45-13-1495_pre_NORMALIZED.csv job_45-13-1495_wCSV_pre_SIGMA_RADIUS_1: cd $(WORKDIR)/45-13-1495;c3d 45-13-1495_pre_SIGMA_RADIUS_1.nii.gz 45-13-1495_labels.nii.gz -lstat > 45-13-1495_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/45-13-1495;sed -i "1,2d" 45-13-1495_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/45-13-1495;sed "s/\s\+/,/g" 45-13-1495_pre_SIGMA_RADIUS_1.txt > 45-13-1495_pre_SIGMA_RADIUS_1.csv cd $(WORKDIR)/45-13-1495;sed -i "s/^/45-13-1495_pre_SIGMA_RADIUS_1,/" 45-13-1495_pre_SIGMA_RADIUS_1.csv job_45-13-1495_wCSV_pre_SIGMA_RADIUS_3: cd $(WORKDIR)/45-13-1495;c3d 45-13-1495_pre_SIGMA_RADIUS_3.nii.gz 45-13-1495_labels.nii.gz -lstat > 45-13-1495_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/45-13-1495;sed -i "1,2d" 45-13-1495_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/45-13-1495;sed "s/\s\+/,/g" 45-13-1495_pre_SIGMA_RADIUS_3.txt > 45-13-1495_pre_SIGMA_RADIUS_3.csv cd $(WORKDIR)/45-13-1495;sed -i "s/^/45-13-1495_pre_SIGMA_RADIUS_3,/" 45-13-1495_pre_SIGMA_RADIUS_3.csv job_45-13-1495_wCSV_pre_SKEWNESS_RADIUS_1: cd $(WORKDIR)/45-13-1495;c3d 45-13-1495_pre_SKEWNESS_RADIUS_1.nii.gz 45-13-1495_labels.nii.gz -lstat > 45-13-1495_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/45-13-1495;sed -i "1,2d" 45-13-1495_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/45-13-1495;sed "s/\s\+/,/g" 45-13-1495_pre_SKEWNESS_RADIUS_1.txt > 45-13-1495_pre_SKEWNESS_RADIUS_1.csv cd $(WORKDIR)/45-13-1495;sed -i "s/^/45-13-1495_pre_SKEWNESS_RADIUS_1,/" 45-13-1495_pre_SKEWNESS_RADIUS_1.csv job_45-13-1495_wCSV_pre_SKEWNESS_RADIUS_3: cd $(WORKDIR)/45-13-1495;c3d 45-13-1495_pre_SKEWNESS_RADIUS_3.nii.gz 45-13-1495_labels.nii.gz -lstat > 45-13-1495_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/45-13-1495;sed -i "1,2d" 45-13-1495_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/45-13-1495;sed "s/\s\+/,/g" 45-13-1495_pre_SKEWNESS_RADIUS_3.txt > 45-13-1495_pre_SKEWNESS_RADIUS_3.csv cd $(WORKDIR)/45-13-1495;sed -i "s/^/45-13-1495_pre_SKEWNESS_RADIUS_3,/" 45-13-1495_pre_SKEWNESS_RADIUS_3.csv job_45-13-1495_wCSV_pre__DIFFERENCE: cd $(WORKDIR)/45-13-1495;c3d 45-13-1495_pre__DIFFERENCE.nii.gz 45-13-1495_labels.nii.gz -lstat > 45-13-1495_pre__DIFFERENCE.txt cd $(WORKDIR)/45-13-1495;sed -i "1,2d" 45-13-1495_pre__DIFFERENCE.txt cd $(WORKDIR)/45-13-1495;sed "s/\s\+/,/g" 45-13-1495_pre__DIFFERENCE.txt > 45-13-1495_pre__DIFFERENCE.csv cd $(WORKDIR)/45-13-1495;sed -i "s/^/45-13-1495_pre__DIFFERENCE,/" 45-13-1495_pre__DIFFERENCE.csv job_46-13-1499_crFI: cd $(WORKDIR)/46-13-1499;c3d 46-13-1499_grey.nii.gz 46-13-1499_labels.nii.gz -copy-transform -o 46-13-1499_labels.nii.gz cd $(WORKDIR)/46-13-1499;c3d 46-13-1499_grey.nii.gz -orient RAI -o 46-13-1499_grey.nii.gz cd $(WORKDIR)/46-13-1499;c3d 46-13-1499_labels.nii.gz -orient RAI -o 46-13-1499_labels.nii.gz cd $(WORKDIR)/46-13-1499;c3d 46-13-1499_labels.nii.gz -binarize -o 46-13-1499_mask.nii.gz cd $(WORKDIR)/46-13-1499;../createFeatureImagesOvary.sh -d 3 -x 46-13-1499_mask.nii.gz -l3 -n pre -a 46-13-1499_grey.nii.gz -f 0x2 -o ./46-13-1499_ -r 1 -r 3 -s 2 -b 4 job_46-13-1499_wCSV_NORMALIZED_DISTANCE: cd $(WORKDIR)/46-13-1499;c3d 46-13-1499_NORMALIZED_DISTANCE.nii.gz 46-13-1499_labels.nii.gz -lstat > 46-13-1499_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/46-13-1499;sed -i "1,2d" 46-13-1499_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/46-13-1499;sed "s/\s\+/,/g" 46-13-1499_NORMALIZED_DISTANCE.txt > 46-13-1499_NORMALIZED_DISTANCE.csv cd $(WORKDIR)/46-13-1499;sed -i "s/^/46-13-1499_NORMALIZED_DISTANCE,/" 46-13-1499_NORMALIZED_DISTANCE.csv job_46-13-1499_wCSV_pre_ATROPOS_GMM: cd $(WORKDIR)/46-13-1499;c3d 46-13-1499_pre_ATROPOS_GMM.nii.gz 46-13-1499_labels.nii.gz -lstat > 46-13-1499_pre_ATROPOS_GMM.txt cd $(WORKDIR)/46-13-1499;sed -i "1,2d" 46-13-1499_pre_ATROPOS_GMM.txt cd $(WORKDIR)/46-13-1499;sed "s/\s\+/,/g" 46-13-1499_pre_ATROPOS_GMM.txt > 46-13-1499_pre_ATROPOS_GMM.csv cd $(WORKDIR)/46-13-1499;sed -i "s/^/46-13-1499_pre_ATROPOS_GMM,/" 46-13-1499_pre_ATROPOS_GMM.csv job_46-13-1499_wCSV_pre_ATROPOS_GMM_ECCENTRICITY: cd $(WORKDIR)/46-13-1499;c3d 46-13-1499_pre_ATROPOS_GMM_ECCENTRICITY.nii.gz 46-13-1499_labels.nii.gz -lstat > 46-13-1499_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/46-13-1499;sed -i "1,2d" 46-13-1499_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/46-13-1499;sed "s/\s\+/,/g" 46-13-1499_pre_ATROPOS_GMM_ECCENTRICITY.txt > 46-13-1499_pre_ATROPOS_GMM_ECCENTRICITY.csv cd $(WORKDIR)/46-13-1499;sed -i "s/^/46-13-1499_pre_ATROPOS_GMM_ECCENTRICITY,/" 46-13-1499_pre_ATROPOS_GMM_ECCENTRICITY.csv job_46-13-1499_wCSV_pre_ATROPOS_GMM_ELONGATION: cd $(WORKDIR)/46-13-1499;c3d 46-13-1499_pre_ATROPOS_GMM_ELONGATION.nii.gz 46-13-1499_labels.nii.gz -lstat > 46-13-1499_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/46-13-1499;sed -i "1,2d" 46-13-1499_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/46-13-1499;sed "s/\s\+/,/g" 46-13-1499_pre_ATROPOS_GMM_ELONGATION.txt > 46-13-1499_pre_ATROPOS_GMM_ELONGATION.csv cd $(WORKDIR)/46-13-1499;sed -i "s/^/46-13-1499_pre_ATROPOS_GMM_ELONGATION,/" 46-13-1499_pre_ATROPOS_GMM_ELONGATION.csv job_46-13-1499_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE: cd $(WORKDIR)/46-13-1499;c3d 46-13-1499_pre_ATROPOS_GMM_LABEL3_DISTANCE.nii.gz 46-13-1499_labels.nii.gz -lstat > 46-13-1499_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/46-13-1499;sed -i "1,2d" 46-13-1499_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/46-13-1499;sed "s/\s\+/,/g" 46-13-1499_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt > 46-13-1499_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv cd $(WORKDIR)/46-13-1499;sed -i "s/^/46-13-1499_pre_ATROPOS_GMM_LABEL3_DISTANCE,/" 46-13-1499_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv job_46-13-1499_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME: cd $(WORKDIR)/46-13-1499;c3d 46-13-1499_pre_ATROPOS_GMM_PHYSICAL_VOLUME.nii.gz 46-13-1499_labels.nii.gz -lstat > 46-13-1499_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/46-13-1499;sed -i "1,2d" 46-13-1499_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/46-13-1499;sed "s/\s\+/,/g" 46-13-1499_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt > 46-13-1499_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv cd $(WORKDIR)/46-13-1499;sed -i "s/^/46-13-1499_pre_ATROPOS_GMM_PHYSICAL_VOLUME,/" 46-13-1499_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv job_46-13-1499_wCSV_pre_ATROPOS_GMM_POSTERIORS1: cd $(WORKDIR)/46-13-1499;c3d 46-13-1499_pre_ATROPOS_GMM_POSTERIORS1.nii.gz 46-13-1499_labels.nii.gz -lstat > 46-13-1499_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/46-13-1499;sed -i "1,2d" 46-13-1499_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/46-13-1499;sed "s/\s\+/,/g" 46-13-1499_pre_ATROPOS_GMM_POSTERIORS1.txt > 46-13-1499_pre_ATROPOS_GMM_POSTERIORS1.csv cd $(WORKDIR)/46-13-1499;sed -i "s/^/46-13-1499_pre_ATROPOS_GMM_POSTERIORS1,/" 46-13-1499_pre_ATROPOS_GMM_POSTERIORS1.csv job_46-13-1499_wCSV_pre_ATROPOS_GMM_POSTERIORS2: cd $(WORKDIR)/46-13-1499;c3d 46-13-1499_pre_ATROPOS_GMM_POSTERIORS2.nii.gz 46-13-1499_labels.nii.gz -lstat > 46-13-1499_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/46-13-1499;sed -i "1,2d" 46-13-1499_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/46-13-1499;sed "s/\s\+/,/g" 46-13-1499_pre_ATROPOS_GMM_POSTERIORS2.txt > 46-13-1499_pre_ATROPOS_GMM_POSTERIORS2.csv cd $(WORKDIR)/46-13-1499;sed -i "s/^/46-13-1499_pre_ATROPOS_GMM_POSTERIORS2,/" 46-13-1499_pre_ATROPOS_GMM_POSTERIORS2.csv job_46-13-1499_wCSV_pre_ATROPOS_GMM_POSTERIORS3: cd $(WORKDIR)/46-13-1499;c3d 46-13-1499_pre_ATROPOS_GMM_POSTERIORS3.nii.gz 46-13-1499_labels.nii.gz -lstat > 46-13-1499_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/46-13-1499;sed -i "1,2d" 46-13-1499_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/46-13-1499;sed "s/\s\+/,/g" 46-13-1499_pre_ATROPOS_GMM_POSTERIORS3.txt > 46-13-1499_pre_ATROPOS_GMM_POSTERIORS3.csv cd $(WORKDIR)/46-13-1499;sed -i "s/^/46-13-1499_pre_ATROPOS_GMM_POSTERIORS3,/" 46-13-1499_pre_ATROPOS_GMM_POSTERIORS3.csv job_46-13-1499_wCSV_pre_ATROPOS_GMM_POSTERIORS4: cd $(WORKDIR)/46-13-1499;c3d 46-13-1499_pre_ATROPOS_GMM_POSTERIORS4.nii.gz 46-13-1499_labels.nii.gz -lstat > 46-13-1499_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/46-13-1499;sed -i "1,2d" 46-13-1499_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/46-13-1499;sed "s/\s\+/,/g" 46-13-1499_pre_ATROPOS_GMM_POSTERIORS4.txt > 46-13-1499_pre_ATROPOS_GMM_POSTERIORS4.csv cd $(WORKDIR)/46-13-1499;sed -i "s/^/46-13-1499_pre_ATROPOS_GMM_POSTERIORS4,/" 46-13-1499_pre_ATROPOS_GMM_POSTERIORS4.csv job_46-13-1499_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO: cd $(WORKDIR)/46-13-1499;c3d 46-13-1499_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.nii.gz 46-13-1499_labels.nii.gz -lstat > 46-13-1499_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/46-13-1499;sed -i "1,2d" 46-13-1499_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/46-13-1499;sed "s/\s\+/,/g" 46-13-1499_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt > 46-13-1499_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv cd $(WORKDIR)/46-13-1499;sed -i "s/^/46-13-1499_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO,/" 46-13-1499_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv job_46-13-1499_wCSV_pre_ENTROPY_RADIUS_1: cd $(WORKDIR)/46-13-1499;c3d 46-13-1499_pre_ENTROPY_RADIUS_1.nii.gz 46-13-1499_labels.nii.gz -lstat > 46-13-1499_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/46-13-1499;sed -i "1,2d" 46-13-1499_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/46-13-1499;sed "s/\s\+/,/g" 46-13-1499_pre_ENTROPY_RADIUS_1.txt > 46-13-1499_pre_ENTROPY_RADIUS_1.csv cd $(WORKDIR)/46-13-1499;sed -i "s/^/46-13-1499_pre_ENTROPY_RADIUS_1,/" 46-13-1499_pre_ENTROPY_RADIUS_1.csv job_46-13-1499_wCSV_pre_ENTROPY_RADIUS_3: cd $(WORKDIR)/46-13-1499;c3d 46-13-1499_pre_ENTROPY_RADIUS_3.nii.gz 46-13-1499_labels.nii.gz -lstat > 46-13-1499_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/46-13-1499;sed -i "1,2d" 46-13-1499_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/46-13-1499;sed "s/\s\+/,/g" 46-13-1499_pre_ENTROPY_RADIUS_3.txt > 46-13-1499_pre_ENTROPY_RADIUS_3.csv cd $(WORKDIR)/46-13-1499;sed -i "s/^/46-13-1499_pre_ENTROPY_RADIUS_3,/" 46-13-1499_pre_ENTROPY_RADIUS_3.csv job_46-13-1499_wCSV_pre_MEAN_RADIUS_1: cd $(WORKDIR)/46-13-1499;c3d 46-13-1499_pre_MEAN_RADIUS_1.nii.gz 46-13-1499_labels.nii.gz -lstat > 46-13-1499_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/46-13-1499;sed -i "1,2d" 46-13-1499_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/46-13-1499;sed "s/\s\+/,/g" 46-13-1499_pre_MEAN_RADIUS_1.txt > 46-13-1499_pre_MEAN_RADIUS_1.csv cd $(WORKDIR)/46-13-1499;sed -i "s/^/46-13-1499_pre_MEAN_RADIUS_1,/" 46-13-1499_pre_MEAN_RADIUS_1.csv job_46-13-1499_wCSV_pre_MEAN_RADIUS_3: cd $(WORKDIR)/46-13-1499;c3d 46-13-1499_pre_MEAN_RADIUS_3.nii.gz 46-13-1499_labels.nii.gz -lstat > 46-13-1499_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/46-13-1499;sed -i "1,2d" 46-13-1499_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/46-13-1499;sed "s/\s\+/,/g" 46-13-1499_pre_MEAN_RADIUS_3.txt > 46-13-1499_pre_MEAN_RADIUS_3.csv cd $(WORKDIR)/46-13-1499;sed -i "s/^/46-13-1499_pre_MEAN_RADIUS_3,/" 46-13-1499_pre_MEAN_RADIUS_3.csv job_46-13-1499_wCSV_pre_NORMALIZED: cd $(WORKDIR)/46-13-1499;c3d 46-13-1499_pre_NORMALIZED.nii.gz 46-13-1499_labels.nii.gz -lstat > 46-13-1499_pre_NORMALIZED.txt cd $(WORKDIR)/46-13-1499;sed -i "1,2d" 46-13-1499_pre_NORMALIZED.txt cd $(WORKDIR)/46-13-1499;sed "s/\s\+/,/g" 46-13-1499_pre_NORMALIZED.txt > 46-13-1499_pre_NORMALIZED.csv cd $(WORKDIR)/46-13-1499;sed -i "s/^/46-13-1499_pre_NORMALIZED,/" 46-13-1499_pre_NORMALIZED.csv job_46-13-1499_wCSV_pre_SIGMA_RADIUS_1: cd $(WORKDIR)/46-13-1499;c3d 46-13-1499_pre_SIGMA_RADIUS_1.nii.gz 46-13-1499_labels.nii.gz -lstat > 46-13-1499_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/46-13-1499;sed -i "1,2d" 46-13-1499_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/46-13-1499;sed "s/\s\+/,/g" 46-13-1499_pre_SIGMA_RADIUS_1.txt > 46-13-1499_pre_SIGMA_RADIUS_1.csv cd $(WORKDIR)/46-13-1499;sed -i "s/^/46-13-1499_pre_SIGMA_RADIUS_1,/" 46-13-1499_pre_SIGMA_RADIUS_1.csv job_46-13-1499_wCSV_pre_SIGMA_RADIUS_3: cd $(WORKDIR)/46-13-1499;c3d 46-13-1499_pre_SIGMA_RADIUS_3.nii.gz 46-13-1499_labels.nii.gz -lstat > 46-13-1499_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/46-13-1499;sed -i "1,2d" 46-13-1499_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/46-13-1499;sed "s/\s\+/,/g" 46-13-1499_pre_SIGMA_RADIUS_3.txt > 46-13-1499_pre_SIGMA_RADIUS_3.csv cd $(WORKDIR)/46-13-1499;sed -i "s/^/46-13-1499_pre_SIGMA_RADIUS_3,/" 46-13-1499_pre_SIGMA_RADIUS_3.csv job_46-13-1499_wCSV_pre_SKEWNESS_RADIUS_1: cd $(WORKDIR)/46-13-1499;c3d 46-13-1499_pre_SKEWNESS_RADIUS_1.nii.gz 46-13-1499_labels.nii.gz -lstat > 46-13-1499_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/46-13-1499;sed -i "1,2d" 46-13-1499_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/46-13-1499;sed "s/\s\+/,/g" 46-13-1499_pre_SKEWNESS_RADIUS_1.txt > 46-13-1499_pre_SKEWNESS_RADIUS_1.csv cd $(WORKDIR)/46-13-1499;sed -i "s/^/46-13-1499_pre_SKEWNESS_RADIUS_1,/" 46-13-1499_pre_SKEWNESS_RADIUS_1.csv job_46-13-1499_wCSV_pre_SKEWNESS_RADIUS_3: cd $(WORKDIR)/46-13-1499;c3d 46-13-1499_pre_SKEWNESS_RADIUS_3.nii.gz 46-13-1499_labels.nii.gz -lstat > 46-13-1499_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/46-13-1499;sed -i "1,2d" 46-13-1499_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/46-13-1499;sed "s/\s\+/,/g" 46-13-1499_pre_SKEWNESS_RADIUS_3.txt > 46-13-1499_pre_SKEWNESS_RADIUS_3.csv cd $(WORKDIR)/46-13-1499;sed -i "s/^/46-13-1499_pre_SKEWNESS_RADIUS_3,/" 46-13-1499_pre_SKEWNESS_RADIUS_3.csv job_46-13-1499_wCSV_pre__DIFFERENCE: cd $(WORKDIR)/46-13-1499;c3d 46-13-1499_pre__DIFFERENCE.nii.gz 46-13-1499_labels.nii.gz -lstat > 46-13-1499_pre__DIFFERENCE.txt cd $(WORKDIR)/46-13-1499;sed -i "1,2d" 46-13-1499_pre__DIFFERENCE.txt cd $(WORKDIR)/46-13-1499;sed "s/\s\+/,/g" 46-13-1499_pre__DIFFERENCE.txt > 46-13-1499_pre__DIFFERENCE.csv cd $(WORKDIR)/46-13-1499;sed -i "s/^/46-13-1499_pre__DIFFERENCE,/" 46-13-1499_pre__DIFFERENCE.csv job_47-13-1504_crFI: cd $(WORKDIR)/47-13-1504;c3d 47-13-1504_grey.nii.gz 47-13-1504_labels.nii.gz -copy-transform -o 47-13-1504_labels.nii.gz cd $(WORKDIR)/47-13-1504;c3d 47-13-1504_grey.nii.gz -orient RAI -o 47-13-1504_grey.nii.gz cd $(WORKDIR)/47-13-1504;c3d 47-13-1504_labels.nii.gz -orient RAI -o 47-13-1504_labels.nii.gz cd $(WORKDIR)/47-13-1504;c3d 47-13-1504_labels.nii.gz -binarize -o 47-13-1504_mask.nii.gz cd $(WORKDIR)/47-13-1504;../createFeatureImagesOvary.sh -d 3 -x 47-13-1504_mask.nii.gz -l3 -n pre -a 47-13-1504_grey.nii.gz -f 0x2 -o ./47-13-1504_ -r 1 -r 3 -s 2 -b 4 job_47-13-1504_wCSV_NORMALIZED_DISTANCE: cd $(WORKDIR)/47-13-1504;c3d 47-13-1504_NORMALIZED_DISTANCE.nii.gz 47-13-1504_labels.nii.gz -lstat > 47-13-1504_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/47-13-1504;sed -i "1,2d" 47-13-1504_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/47-13-1504;sed "s/\s\+/,/g" 47-13-1504_NORMALIZED_DISTANCE.txt > 47-13-1504_NORMALIZED_DISTANCE.csv cd $(WORKDIR)/47-13-1504;sed -i "s/^/47-13-1504_NORMALIZED_DISTANCE,/" 47-13-1504_NORMALIZED_DISTANCE.csv job_47-13-1504_wCSV_pre_ATROPOS_GMM: cd $(WORKDIR)/47-13-1504;c3d 47-13-1504_pre_ATROPOS_GMM.nii.gz 47-13-1504_labels.nii.gz -lstat > 47-13-1504_pre_ATROPOS_GMM.txt cd $(WORKDIR)/47-13-1504;sed -i "1,2d" 47-13-1504_pre_ATROPOS_GMM.txt cd $(WORKDIR)/47-13-1504;sed "s/\s\+/,/g" 47-13-1504_pre_ATROPOS_GMM.txt > 47-13-1504_pre_ATROPOS_GMM.csv cd $(WORKDIR)/47-13-1504;sed -i "s/^/47-13-1504_pre_ATROPOS_GMM,/" 47-13-1504_pre_ATROPOS_GMM.csv job_47-13-1504_wCSV_pre_ATROPOS_GMM_ECCENTRICITY: cd $(WORKDIR)/47-13-1504;c3d 47-13-1504_pre_ATROPOS_GMM_ECCENTRICITY.nii.gz 47-13-1504_labels.nii.gz -lstat > 47-13-1504_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/47-13-1504;sed -i "1,2d" 47-13-1504_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/47-13-1504;sed "s/\s\+/,/g" 47-13-1504_pre_ATROPOS_GMM_ECCENTRICITY.txt > 47-13-1504_pre_ATROPOS_GMM_ECCENTRICITY.csv cd $(WORKDIR)/47-13-1504;sed -i "s/^/47-13-1504_pre_ATROPOS_GMM_ECCENTRICITY,/" 47-13-1504_pre_ATROPOS_GMM_ECCENTRICITY.csv job_47-13-1504_wCSV_pre_ATROPOS_GMM_ELONGATION: cd $(WORKDIR)/47-13-1504;c3d 47-13-1504_pre_ATROPOS_GMM_ELONGATION.nii.gz 47-13-1504_labels.nii.gz -lstat > 47-13-1504_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/47-13-1504;sed -i "1,2d" 47-13-1504_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/47-13-1504;sed "s/\s\+/,/g" 47-13-1504_pre_ATROPOS_GMM_ELONGATION.txt > 47-13-1504_pre_ATROPOS_GMM_ELONGATION.csv cd $(WORKDIR)/47-13-1504;sed -i "s/^/47-13-1504_pre_ATROPOS_GMM_ELONGATION,/" 47-13-1504_pre_ATROPOS_GMM_ELONGATION.csv job_47-13-1504_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE: cd $(WORKDIR)/47-13-1504;c3d 47-13-1504_pre_ATROPOS_GMM_LABEL3_DISTANCE.nii.gz 47-13-1504_labels.nii.gz -lstat > 47-13-1504_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/47-13-1504;sed -i "1,2d" 47-13-1504_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/47-13-1504;sed "s/\s\+/,/g" 47-13-1504_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt > 47-13-1504_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv cd $(WORKDIR)/47-13-1504;sed -i "s/^/47-13-1504_pre_ATROPOS_GMM_LABEL3_DISTANCE,/" 47-13-1504_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv job_47-13-1504_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME: cd $(WORKDIR)/47-13-1504;c3d 47-13-1504_pre_ATROPOS_GMM_PHYSICAL_VOLUME.nii.gz 47-13-1504_labels.nii.gz -lstat > 47-13-1504_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/47-13-1504;sed -i "1,2d" 47-13-1504_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/47-13-1504;sed "s/\s\+/,/g" 47-13-1504_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt > 47-13-1504_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv cd $(WORKDIR)/47-13-1504;sed -i "s/^/47-13-1504_pre_ATROPOS_GMM_PHYSICAL_VOLUME,/" 47-13-1504_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv job_47-13-1504_wCSV_pre_ATROPOS_GMM_POSTERIORS1: cd $(WORKDIR)/47-13-1504;c3d 47-13-1504_pre_ATROPOS_GMM_POSTERIORS1.nii.gz 47-13-1504_labels.nii.gz -lstat > 47-13-1504_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/47-13-1504;sed -i "1,2d" 47-13-1504_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/47-13-1504;sed "s/\s\+/,/g" 47-13-1504_pre_ATROPOS_GMM_POSTERIORS1.txt > 47-13-1504_pre_ATROPOS_GMM_POSTERIORS1.csv cd $(WORKDIR)/47-13-1504;sed -i "s/^/47-13-1504_pre_ATROPOS_GMM_POSTERIORS1,/" 47-13-1504_pre_ATROPOS_GMM_POSTERIORS1.csv job_47-13-1504_wCSV_pre_ATROPOS_GMM_POSTERIORS2: cd $(WORKDIR)/47-13-1504;c3d 47-13-1504_pre_ATROPOS_GMM_POSTERIORS2.nii.gz 47-13-1504_labels.nii.gz -lstat > 47-13-1504_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/47-13-1504;sed -i "1,2d" 47-13-1504_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/47-13-1504;sed "s/\s\+/,/g" 47-13-1504_pre_ATROPOS_GMM_POSTERIORS2.txt > 47-13-1504_pre_ATROPOS_GMM_POSTERIORS2.csv cd $(WORKDIR)/47-13-1504;sed -i "s/^/47-13-1504_pre_ATROPOS_GMM_POSTERIORS2,/" 47-13-1504_pre_ATROPOS_GMM_POSTERIORS2.csv job_47-13-1504_wCSV_pre_ATROPOS_GMM_POSTERIORS3: cd $(WORKDIR)/47-13-1504;c3d 47-13-1504_pre_ATROPOS_GMM_POSTERIORS3.nii.gz 47-13-1504_labels.nii.gz -lstat > 47-13-1504_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/47-13-1504;sed -i "1,2d" 47-13-1504_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/47-13-1504;sed "s/\s\+/,/g" 47-13-1504_pre_ATROPOS_GMM_POSTERIORS3.txt > 47-13-1504_pre_ATROPOS_GMM_POSTERIORS3.csv cd $(WORKDIR)/47-13-1504;sed -i "s/^/47-13-1504_pre_ATROPOS_GMM_POSTERIORS3,/" 47-13-1504_pre_ATROPOS_GMM_POSTERIORS3.csv job_47-13-1504_wCSV_pre_ATROPOS_GMM_POSTERIORS4: cd $(WORKDIR)/47-13-1504;c3d 47-13-1504_pre_ATROPOS_GMM_POSTERIORS4.nii.gz 47-13-1504_labels.nii.gz -lstat > 47-13-1504_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/47-13-1504;sed -i "1,2d" 47-13-1504_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/47-13-1504;sed "s/\s\+/,/g" 47-13-1504_pre_ATROPOS_GMM_POSTERIORS4.txt > 47-13-1504_pre_ATROPOS_GMM_POSTERIORS4.csv cd $(WORKDIR)/47-13-1504;sed -i "s/^/47-13-1504_pre_ATROPOS_GMM_POSTERIORS4,/" 47-13-1504_pre_ATROPOS_GMM_POSTERIORS4.csv job_47-13-1504_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO: cd $(WORKDIR)/47-13-1504;c3d 47-13-1504_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.nii.gz 47-13-1504_labels.nii.gz -lstat > 47-13-1504_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/47-13-1504;sed -i "1,2d" 47-13-1504_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/47-13-1504;sed "s/\s\+/,/g" 47-13-1504_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt > 47-13-1504_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv cd $(WORKDIR)/47-13-1504;sed -i "s/^/47-13-1504_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO,/" 47-13-1504_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv job_47-13-1504_wCSV_pre_ENTROPY_RADIUS_1: cd $(WORKDIR)/47-13-1504;c3d 47-13-1504_pre_ENTROPY_RADIUS_1.nii.gz 47-13-1504_labels.nii.gz -lstat > 47-13-1504_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/47-13-1504;sed -i "1,2d" 47-13-1504_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/47-13-1504;sed "s/\s\+/,/g" 47-13-1504_pre_ENTROPY_RADIUS_1.txt > 47-13-1504_pre_ENTROPY_RADIUS_1.csv cd $(WORKDIR)/47-13-1504;sed -i "s/^/47-13-1504_pre_ENTROPY_RADIUS_1,/" 47-13-1504_pre_ENTROPY_RADIUS_1.csv job_47-13-1504_wCSV_pre_ENTROPY_RADIUS_3: cd $(WORKDIR)/47-13-1504;c3d 47-13-1504_pre_ENTROPY_RADIUS_3.nii.gz 47-13-1504_labels.nii.gz -lstat > 47-13-1504_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/47-13-1504;sed -i "1,2d" 47-13-1504_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/47-13-1504;sed "s/\s\+/,/g" 47-13-1504_pre_ENTROPY_RADIUS_3.txt > 47-13-1504_pre_ENTROPY_RADIUS_3.csv cd $(WORKDIR)/47-13-1504;sed -i "s/^/47-13-1504_pre_ENTROPY_RADIUS_3,/" 47-13-1504_pre_ENTROPY_RADIUS_3.csv job_47-13-1504_wCSV_pre_MEAN_RADIUS_1: cd $(WORKDIR)/47-13-1504;c3d 47-13-1504_pre_MEAN_RADIUS_1.nii.gz 47-13-1504_labels.nii.gz -lstat > 47-13-1504_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/47-13-1504;sed -i "1,2d" 47-13-1504_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/47-13-1504;sed "s/\s\+/,/g" 47-13-1504_pre_MEAN_RADIUS_1.txt > 47-13-1504_pre_MEAN_RADIUS_1.csv cd $(WORKDIR)/47-13-1504;sed -i "s/^/47-13-1504_pre_MEAN_RADIUS_1,/" 47-13-1504_pre_MEAN_RADIUS_1.csv job_47-13-1504_wCSV_pre_MEAN_RADIUS_3: cd $(WORKDIR)/47-13-1504;c3d 47-13-1504_pre_MEAN_RADIUS_3.nii.gz 47-13-1504_labels.nii.gz -lstat > 47-13-1504_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/47-13-1504;sed -i "1,2d" 47-13-1504_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/47-13-1504;sed "s/\s\+/,/g" 47-13-1504_pre_MEAN_RADIUS_3.txt > 47-13-1504_pre_MEAN_RADIUS_3.csv cd $(WORKDIR)/47-13-1504;sed -i "s/^/47-13-1504_pre_MEAN_RADIUS_3,/" 47-13-1504_pre_MEAN_RADIUS_3.csv job_47-13-1504_wCSV_pre_NORMALIZED: cd $(WORKDIR)/47-13-1504;c3d 47-13-1504_pre_NORMALIZED.nii.gz 47-13-1504_labels.nii.gz -lstat > 47-13-1504_pre_NORMALIZED.txt cd $(WORKDIR)/47-13-1504;sed -i "1,2d" 47-13-1504_pre_NORMALIZED.txt cd $(WORKDIR)/47-13-1504;sed "s/\s\+/,/g" 47-13-1504_pre_NORMALIZED.txt > 47-13-1504_pre_NORMALIZED.csv cd $(WORKDIR)/47-13-1504;sed -i "s/^/47-13-1504_pre_NORMALIZED,/" 47-13-1504_pre_NORMALIZED.csv job_47-13-1504_wCSV_pre_SIGMA_RADIUS_1: cd $(WORKDIR)/47-13-1504;c3d 47-13-1504_pre_SIGMA_RADIUS_1.nii.gz 47-13-1504_labels.nii.gz -lstat > 47-13-1504_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/47-13-1504;sed -i "1,2d" 47-13-1504_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/47-13-1504;sed "s/\s\+/,/g" 47-13-1504_pre_SIGMA_RADIUS_1.txt > 47-13-1504_pre_SIGMA_RADIUS_1.csv cd $(WORKDIR)/47-13-1504;sed -i "s/^/47-13-1504_pre_SIGMA_RADIUS_1,/" 47-13-1504_pre_SIGMA_RADIUS_1.csv job_47-13-1504_wCSV_pre_SIGMA_RADIUS_3: cd $(WORKDIR)/47-13-1504;c3d 47-13-1504_pre_SIGMA_RADIUS_3.nii.gz 47-13-1504_labels.nii.gz -lstat > 47-13-1504_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/47-13-1504;sed -i "1,2d" 47-13-1504_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/47-13-1504;sed "s/\s\+/,/g" 47-13-1504_pre_SIGMA_RADIUS_3.txt > 47-13-1504_pre_SIGMA_RADIUS_3.csv cd $(WORKDIR)/47-13-1504;sed -i "s/^/47-13-1504_pre_SIGMA_RADIUS_3,/" 47-13-1504_pre_SIGMA_RADIUS_3.csv job_47-13-1504_wCSV_pre_SKEWNESS_RADIUS_1: cd $(WORKDIR)/47-13-1504;c3d 47-13-1504_pre_SKEWNESS_RADIUS_1.nii.gz 47-13-1504_labels.nii.gz -lstat > 47-13-1504_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/47-13-1504;sed -i "1,2d" 47-13-1504_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/47-13-1504;sed "s/\s\+/,/g" 47-13-1504_pre_SKEWNESS_RADIUS_1.txt > 47-13-1504_pre_SKEWNESS_RADIUS_1.csv cd $(WORKDIR)/47-13-1504;sed -i "s/^/47-13-1504_pre_SKEWNESS_RADIUS_1,/" 47-13-1504_pre_SKEWNESS_RADIUS_1.csv job_47-13-1504_wCSV_pre_SKEWNESS_RADIUS_3: cd $(WORKDIR)/47-13-1504;c3d 47-13-1504_pre_SKEWNESS_RADIUS_3.nii.gz 47-13-1504_labels.nii.gz -lstat > 47-13-1504_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/47-13-1504;sed -i "1,2d" 47-13-1504_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/47-13-1504;sed "s/\s\+/,/g" 47-13-1504_pre_SKEWNESS_RADIUS_3.txt > 47-13-1504_pre_SKEWNESS_RADIUS_3.csv cd $(WORKDIR)/47-13-1504;sed -i "s/^/47-13-1504_pre_SKEWNESS_RADIUS_3,/" 47-13-1504_pre_SKEWNESS_RADIUS_3.csv job_47-13-1504_wCSV_pre__DIFFERENCE: cd $(WORKDIR)/47-13-1504;c3d 47-13-1504_pre__DIFFERENCE.nii.gz 47-13-1504_labels.nii.gz -lstat > 47-13-1504_pre__DIFFERENCE.txt cd $(WORKDIR)/47-13-1504;sed -i "1,2d" 47-13-1504_pre__DIFFERENCE.txt cd $(WORKDIR)/47-13-1504;sed "s/\s\+/,/g" 47-13-1504_pre__DIFFERENCE.txt > 47-13-1504_pre__DIFFERENCE.csv cd $(WORKDIR)/47-13-1504;sed -i "s/^/47-13-1504_pre__DIFFERENCE,/" 47-13-1504_pre__DIFFERENCE.csv job_48-13-1505_crFI: cd $(WORKDIR)/48-13-1505;c3d 48-13-1505_grey.nii.gz 48-13-1505_labels.nii.gz -copy-transform -o 48-13-1505_labels.nii.gz cd $(WORKDIR)/48-13-1505;c3d 48-13-1505_grey.nii.gz -orient RAI -o 48-13-1505_grey.nii.gz cd $(WORKDIR)/48-13-1505;c3d 48-13-1505_labels.nii.gz -orient RAI -o 48-13-1505_labels.nii.gz cd $(WORKDIR)/48-13-1505;c3d 48-13-1505_labels.nii.gz -binarize -o 48-13-1505_mask.nii.gz cd $(WORKDIR)/48-13-1505;../createFeatureImagesOvary.sh -d 3 -x 48-13-1505_mask.nii.gz -l3 -n pre -a 48-13-1505_grey.nii.gz -f 0x2 -o ./48-13-1505_ -r 1 -r 3 -s 2 -b 4 job_48-13-1505_wCSV_NORMALIZED_DISTANCE: cd $(WORKDIR)/48-13-1505;c3d 48-13-1505_NORMALIZED_DISTANCE.nii.gz 48-13-1505_labels.nii.gz -lstat > 48-13-1505_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/48-13-1505;sed -i "1,2d" 48-13-1505_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/48-13-1505;sed "s/\s\+/,/g" 48-13-1505_NORMALIZED_DISTANCE.txt > 48-13-1505_NORMALIZED_DISTANCE.csv cd $(WORKDIR)/48-13-1505;sed -i "s/^/48-13-1505_NORMALIZED_DISTANCE,/" 48-13-1505_NORMALIZED_DISTANCE.csv job_48-13-1505_wCSV_pre_ATROPOS_GMM: cd $(WORKDIR)/48-13-1505;c3d 48-13-1505_pre_ATROPOS_GMM.nii.gz 48-13-1505_labels.nii.gz -lstat > 48-13-1505_pre_ATROPOS_GMM.txt cd $(WORKDIR)/48-13-1505;sed -i "1,2d" 48-13-1505_pre_ATROPOS_GMM.txt cd $(WORKDIR)/48-13-1505;sed "s/\s\+/,/g" 48-13-1505_pre_ATROPOS_GMM.txt > 48-13-1505_pre_ATROPOS_GMM.csv cd $(WORKDIR)/48-13-1505;sed -i "s/^/48-13-1505_pre_ATROPOS_GMM,/" 48-13-1505_pre_ATROPOS_GMM.csv job_48-13-1505_wCSV_pre_ATROPOS_GMM_ECCENTRICITY: cd $(WORKDIR)/48-13-1505;c3d 48-13-1505_pre_ATROPOS_GMM_ECCENTRICITY.nii.gz 48-13-1505_labels.nii.gz -lstat > 48-13-1505_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/48-13-1505;sed -i "1,2d" 48-13-1505_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/48-13-1505;sed "s/\s\+/,/g" 48-13-1505_pre_ATROPOS_GMM_ECCENTRICITY.txt > 48-13-1505_pre_ATROPOS_GMM_ECCENTRICITY.csv cd $(WORKDIR)/48-13-1505;sed -i "s/^/48-13-1505_pre_ATROPOS_GMM_ECCENTRICITY,/" 48-13-1505_pre_ATROPOS_GMM_ECCENTRICITY.csv job_48-13-1505_wCSV_pre_ATROPOS_GMM_ELONGATION: cd $(WORKDIR)/48-13-1505;c3d 48-13-1505_pre_ATROPOS_GMM_ELONGATION.nii.gz 48-13-1505_labels.nii.gz -lstat > 48-13-1505_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/48-13-1505;sed -i "1,2d" 48-13-1505_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/48-13-1505;sed "s/\s\+/,/g" 48-13-1505_pre_ATROPOS_GMM_ELONGATION.txt > 48-13-1505_pre_ATROPOS_GMM_ELONGATION.csv cd $(WORKDIR)/48-13-1505;sed -i "s/^/48-13-1505_pre_ATROPOS_GMM_ELONGATION,/" 48-13-1505_pre_ATROPOS_GMM_ELONGATION.csv job_48-13-1505_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE: cd $(WORKDIR)/48-13-1505;c3d 48-13-1505_pre_ATROPOS_GMM_LABEL3_DISTANCE.nii.gz 48-13-1505_labels.nii.gz -lstat > 48-13-1505_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/48-13-1505;sed -i "1,2d" 48-13-1505_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/48-13-1505;sed "s/\s\+/,/g" 48-13-1505_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt > 48-13-1505_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv cd $(WORKDIR)/48-13-1505;sed -i "s/^/48-13-1505_pre_ATROPOS_GMM_LABEL3_DISTANCE,/" 48-13-1505_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv job_48-13-1505_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME: cd $(WORKDIR)/48-13-1505;c3d 48-13-1505_pre_ATROPOS_GMM_PHYSICAL_VOLUME.nii.gz 48-13-1505_labels.nii.gz -lstat > 48-13-1505_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/48-13-1505;sed -i "1,2d" 48-13-1505_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/48-13-1505;sed "s/\s\+/,/g" 48-13-1505_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt > 48-13-1505_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv cd $(WORKDIR)/48-13-1505;sed -i "s/^/48-13-1505_pre_ATROPOS_GMM_PHYSICAL_VOLUME,/" 48-13-1505_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv job_48-13-1505_wCSV_pre_ATROPOS_GMM_POSTERIORS1: cd $(WORKDIR)/48-13-1505;c3d 48-13-1505_pre_ATROPOS_GMM_POSTERIORS1.nii.gz 48-13-1505_labels.nii.gz -lstat > 48-13-1505_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/48-13-1505;sed -i "1,2d" 48-13-1505_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/48-13-1505;sed "s/\s\+/,/g" 48-13-1505_pre_ATROPOS_GMM_POSTERIORS1.txt > 48-13-1505_pre_ATROPOS_GMM_POSTERIORS1.csv cd $(WORKDIR)/48-13-1505;sed -i "s/^/48-13-1505_pre_ATROPOS_GMM_POSTERIORS1,/" 48-13-1505_pre_ATROPOS_GMM_POSTERIORS1.csv job_48-13-1505_wCSV_pre_ATROPOS_GMM_POSTERIORS2: cd $(WORKDIR)/48-13-1505;c3d 48-13-1505_pre_ATROPOS_GMM_POSTERIORS2.nii.gz 48-13-1505_labels.nii.gz -lstat > 48-13-1505_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/48-13-1505;sed -i "1,2d" 48-13-1505_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/48-13-1505;sed "s/\s\+/,/g" 48-13-1505_pre_ATROPOS_GMM_POSTERIORS2.txt > 48-13-1505_pre_ATROPOS_GMM_POSTERIORS2.csv cd $(WORKDIR)/48-13-1505;sed -i "s/^/48-13-1505_pre_ATROPOS_GMM_POSTERIORS2,/" 48-13-1505_pre_ATROPOS_GMM_POSTERIORS2.csv job_48-13-1505_wCSV_pre_ATROPOS_GMM_POSTERIORS3: cd $(WORKDIR)/48-13-1505;c3d 48-13-1505_pre_ATROPOS_GMM_POSTERIORS3.nii.gz 48-13-1505_labels.nii.gz -lstat > 48-13-1505_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/48-13-1505;sed -i "1,2d" 48-13-1505_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/48-13-1505;sed "s/\s\+/,/g" 48-13-1505_pre_ATROPOS_GMM_POSTERIORS3.txt > 48-13-1505_pre_ATROPOS_GMM_POSTERIORS3.csv cd $(WORKDIR)/48-13-1505;sed -i "s/^/48-13-1505_pre_ATROPOS_GMM_POSTERIORS3,/" 48-13-1505_pre_ATROPOS_GMM_POSTERIORS3.csv job_48-13-1505_wCSV_pre_ATROPOS_GMM_POSTERIORS4: cd $(WORKDIR)/48-13-1505;c3d 48-13-1505_pre_ATROPOS_GMM_POSTERIORS4.nii.gz 48-13-1505_labels.nii.gz -lstat > 48-13-1505_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/48-13-1505;sed -i "1,2d" 48-13-1505_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/48-13-1505;sed "s/\s\+/,/g" 48-13-1505_pre_ATROPOS_GMM_POSTERIORS4.txt > 48-13-1505_pre_ATROPOS_GMM_POSTERIORS4.csv cd $(WORKDIR)/48-13-1505;sed -i "s/^/48-13-1505_pre_ATROPOS_GMM_POSTERIORS4,/" 48-13-1505_pre_ATROPOS_GMM_POSTERIORS4.csv job_48-13-1505_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO: cd $(WORKDIR)/48-13-1505;c3d 48-13-1505_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.nii.gz 48-13-1505_labels.nii.gz -lstat > 48-13-1505_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/48-13-1505;sed -i "1,2d" 48-13-1505_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/48-13-1505;sed "s/\s\+/,/g" 48-13-1505_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt > 48-13-1505_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv cd $(WORKDIR)/48-13-1505;sed -i "s/^/48-13-1505_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO,/" 48-13-1505_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv job_48-13-1505_wCSV_pre_ENTROPY_RADIUS_1: cd $(WORKDIR)/48-13-1505;c3d 48-13-1505_pre_ENTROPY_RADIUS_1.nii.gz 48-13-1505_labels.nii.gz -lstat > 48-13-1505_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/48-13-1505;sed -i "1,2d" 48-13-1505_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/48-13-1505;sed "s/\s\+/,/g" 48-13-1505_pre_ENTROPY_RADIUS_1.txt > 48-13-1505_pre_ENTROPY_RADIUS_1.csv cd $(WORKDIR)/48-13-1505;sed -i "s/^/48-13-1505_pre_ENTROPY_RADIUS_1,/" 48-13-1505_pre_ENTROPY_RADIUS_1.csv job_48-13-1505_wCSV_pre_ENTROPY_RADIUS_3: cd $(WORKDIR)/48-13-1505;c3d 48-13-1505_pre_ENTROPY_RADIUS_3.nii.gz 48-13-1505_labels.nii.gz -lstat > 48-13-1505_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/48-13-1505;sed -i "1,2d" 48-13-1505_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/48-13-1505;sed "s/\s\+/,/g" 48-13-1505_pre_ENTROPY_RADIUS_3.txt > 48-13-1505_pre_ENTROPY_RADIUS_3.csv cd $(WORKDIR)/48-13-1505;sed -i "s/^/48-13-1505_pre_ENTROPY_RADIUS_3,/" 48-13-1505_pre_ENTROPY_RADIUS_3.csv job_48-13-1505_wCSV_pre_MEAN_RADIUS_1: cd $(WORKDIR)/48-13-1505;c3d 48-13-1505_pre_MEAN_RADIUS_1.nii.gz 48-13-1505_labels.nii.gz -lstat > 48-13-1505_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/48-13-1505;sed -i "1,2d" 48-13-1505_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/48-13-1505;sed "s/\s\+/,/g" 48-13-1505_pre_MEAN_RADIUS_1.txt > 48-13-1505_pre_MEAN_RADIUS_1.csv cd $(WORKDIR)/48-13-1505;sed -i "s/^/48-13-1505_pre_MEAN_RADIUS_1,/" 48-13-1505_pre_MEAN_RADIUS_1.csv job_48-13-1505_wCSV_pre_MEAN_RADIUS_3: cd $(WORKDIR)/48-13-1505;c3d 48-13-1505_pre_MEAN_RADIUS_3.nii.gz 48-13-1505_labels.nii.gz -lstat > 48-13-1505_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/48-13-1505;sed -i "1,2d" 48-13-1505_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/48-13-1505;sed "s/\s\+/,/g" 48-13-1505_pre_MEAN_RADIUS_3.txt > 48-13-1505_pre_MEAN_RADIUS_3.csv cd $(WORKDIR)/48-13-1505;sed -i "s/^/48-13-1505_pre_MEAN_RADIUS_3,/" 48-13-1505_pre_MEAN_RADIUS_3.csv job_48-13-1505_wCSV_pre_NORMALIZED: cd $(WORKDIR)/48-13-1505;c3d 48-13-1505_pre_NORMALIZED.nii.gz 48-13-1505_labels.nii.gz -lstat > 48-13-1505_pre_NORMALIZED.txt cd $(WORKDIR)/48-13-1505;sed -i "1,2d" 48-13-1505_pre_NORMALIZED.txt cd $(WORKDIR)/48-13-1505;sed "s/\s\+/,/g" 48-13-1505_pre_NORMALIZED.txt > 48-13-1505_pre_NORMALIZED.csv cd $(WORKDIR)/48-13-1505;sed -i "s/^/48-13-1505_pre_NORMALIZED,/" 48-13-1505_pre_NORMALIZED.csv job_48-13-1505_wCSV_pre_SIGMA_RADIUS_1: cd $(WORKDIR)/48-13-1505;c3d 48-13-1505_pre_SIGMA_RADIUS_1.nii.gz 48-13-1505_labels.nii.gz -lstat > 48-13-1505_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/48-13-1505;sed -i "1,2d" 48-13-1505_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/48-13-1505;sed "s/\s\+/,/g" 48-13-1505_pre_SIGMA_RADIUS_1.txt > 48-13-1505_pre_SIGMA_RADIUS_1.csv cd $(WORKDIR)/48-13-1505;sed -i "s/^/48-13-1505_pre_SIGMA_RADIUS_1,/" 48-13-1505_pre_SIGMA_RADIUS_1.csv job_48-13-1505_wCSV_pre_SIGMA_RADIUS_3: cd $(WORKDIR)/48-13-1505;c3d 48-13-1505_pre_SIGMA_RADIUS_3.nii.gz 48-13-1505_labels.nii.gz -lstat > 48-13-1505_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/48-13-1505;sed -i "1,2d" 48-13-1505_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/48-13-1505;sed "s/\s\+/,/g" 48-13-1505_pre_SIGMA_RADIUS_3.txt > 48-13-1505_pre_SIGMA_RADIUS_3.csv cd $(WORKDIR)/48-13-1505;sed -i "s/^/48-13-1505_pre_SIGMA_RADIUS_3,/" 48-13-1505_pre_SIGMA_RADIUS_3.csv job_48-13-1505_wCSV_pre_SKEWNESS_RADIUS_1: cd $(WORKDIR)/48-13-1505;c3d 48-13-1505_pre_SKEWNESS_RADIUS_1.nii.gz 48-13-1505_labels.nii.gz -lstat > 48-13-1505_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/48-13-1505;sed -i "1,2d" 48-13-1505_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/48-13-1505;sed "s/\s\+/,/g" 48-13-1505_pre_SKEWNESS_RADIUS_1.txt > 48-13-1505_pre_SKEWNESS_RADIUS_1.csv cd $(WORKDIR)/48-13-1505;sed -i "s/^/48-13-1505_pre_SKEWNESS_RADIUS_1,/" 48-13-1505_pre_SKEWNESS_RADIUS_1.csv job_48-13-1505_wCSV_pre_SKEWNESS_RADIUS_3: cd $(WORKDIR)/48-13-1505;c3d 48-13-1505_pre_SKEWNESS_RADIUS_3.nii.gz 48-13-1505_labels.nii.gz -lstat > 48-13-1505_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/48-13-1505;sed -i "1,2d" 48-13-1505_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/48-13-1505;sed "s/\s\+/,/g" 48-13-1505_pre_SKEWNESS_RADIUS_3.txt > 48-13-1505_pre_SKEWNESS_RADIUS_3.csv cd $(WORKDIR)/48-13-1505;sed -i "s/^/48-13-1505_pre_SKEWNESS_RADIUS_3,/" 48-13-1505_pre_SKEWNESS_RADIUS_3.csv job_48-13-1505_wCSV_pre__DIFFERENCE: cd $(WORKDIR)/48-13-1505;c3d 48-13-1505_pre__DIFFERENCE.nii.gz 48-13-1505_labels.nii.gz -lstat > 48-13-1505_pre__DIFFERENCE.txt cd $(WORKDIR)/48-13-1505;sed -i "1,2d" 48-13-1505_pre__DIFFERENCE.txt cd $(WORKDIR)/48-13-1505;sed "s/\s\+/,/g" 48-13-1505_pre__DIFFERENCE.txt > 48-13-1505_pre__DIFFERENCE.csv cd $(WORKDIR)/48-13-1505;sed -i "s/^/48-13-1505_pre__DIFFERENCE,/" 48-13-1505_pre__DIFFERENCE.csv job_49-13-1506_crFI: cd $(WORKDIR)/49-13-1506;c3d 49-13-1506_grey.nii.gz 49-13-1506_labels.nii.gz -copy-transform -o 49-13-1506_labels.nii.gz cd $(WORKDIR)/49-13-1506;c3d 49-13-1506_grey.nii.gz -orient RAI -o 49-13-1506_grey.nii.gz cd $(WORKDIR)/49-13-1506;c3d 49-13-1506_labels.nii.gz -orient RAI -o 49-13-1506_labels.nii.gz cd $(WORKDIR)/49-13-1506;c3d 49-13-1506_labels.nii.gz -binarize -o 49-13-1506_mask.nii.gz cd $(WORKDIR)/49-13-1506;../createFeatureImagesOvary.sh -d 3 -x 49-13-1506_mask.nii.gz -l3 -n pre -a 49-13-1506_grey.nii.gz -f 0x2 -o ./49-13-1506_ -r 1 -r 3 -s 2 -b 4 job_49-13-1506_wCSV_NORMALIZED_DISTANCE: cd $(WORKDIR)/49-13-1506;c3d 49-13-1506_NORMALIZED_DISTANCE.nii.gz 49-13-1506_labels.nii.gz -lstat > 49-13-1506_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/49-13-1506;sed -i "1,2d" 49-13-1506_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/49-13-1506;sed "s/\s\+/,/g" 49-13-1506_NORMALIZED_DISTANCE.txt > 49-13-1506_NORMALIZED_DISTANCE.csv cd $(WORKDIR)/49-13-1506;sed -i "s/^/49-13-1506_NORMALIZED_DISTANCE,/" 49-13-1506_NORMALIZED_DISTANCE.csv job_49-13-1506_wCSV_pre_ATROPOS_GMM: cd $(WORKDIR)/49-13-1506;c3d 49-13-1506_pre_ATROPOS_GMM.nii.gz 49-13-1506_labels.nii.gz -lstat > 49-13-1506_pre_ATROPOS_GMM.txt cd $(WORKDIR)/49-13-1506;sed -i "1,2d" 49-13-1506_pre_ATROPOS_GMM.txt cd $(WORKDIR)/49-13-1506;sed "s/\s\+/,/g" 49-13-1506_pre_ATROPOS_GMM.txt > 49-13-1506_pre_ATROPOS_GMM.csv cd $(WORKDIR)/49-13-1506;sed -i "s/^/49-13-1506_pre_ATROPOS_GMM,/" 49-13-1506_pre_ATROPOS_GMM.csv job_49-13-1506_wCSV_pre_ATROPOS_GMM_ECCENTRICITY: cd $(WORKDIR)/49-13-1506;c3d 49-13-1506_pre_ATROPOS_GMM_ECCENTRICITY.nii.gz 49-13-1506_labels.nii.gz -lstat > 49-13-1506_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/49-13-1506;sed -i "1,2d" 49-13-1506_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/49-13-1506;sed "s/\s\+/,/g" 49-13-1506_pre_ATROPOS_GMM_ECCENTRICITY.txt > 49-13-1506_pre_ATROPOS_GMM_ECCENTRICITY.csv cd $(WORKDIR)/49-13-1506;sed -i "s/^/49-13-1506_pre_ATROPOS_GMM_ECCENTRICITY,/" 49-13-1506_pre_ATROPOS_GMM_ECCENTRICITY.csv job_49-13-1506_wCSV_pre_ATROPOS_GMM_ELONGATION: cd $(WORKDIR)/49-13-1506;c3d 49-13-1506_pre_ATROPOS_GMM_ELONGATION.nii.gz 49-13-1506_labels.nii.gz -lstat > 49-13-1506_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/49-13-1506;sed -i "1,2d" 49-13-1506_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/49-13-1506;sed "s/\s\+/,/g" 49-13-1506_pre_ATROPOS_GMM_ELONGATION.txt > 49-13-1506_pre_ATROPOS_GMM_ELONGATION.csv cd $(WORKDIR)/49-13-1506;sed -i "s/^/49-13-1506_pre_ATROPOS_GMM_ELONGATION,/" 49-13-1506_pre_ATROPOS_GMM_ELONGATION.csv job_49-13-1506_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE: cd $(WORKDIR)/49-13-1506;c3d 49-13-1506_pre_ATROPOS_GMM_LABEL3_DISTANCE.nii.gz 49-13-1506_labels.nii.gz -lstat > 49-13-1506_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/49-13-1506;sed -i "1,2d" 49-13-1506_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/49-13-1506;sed "s/\s\+/,/g" 49-13-1506_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt > 49-13-1506_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv cd $(WORKDIR)/49-13-1506;sed -i "s/^/49-13-1506_pre_ATROPOS_GMM_LABEL3_DISTANCE,/" 49-13-1506_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv job_49-13-1506_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME: cd $(WORKDIR)/49-13-1506;c3d 49-13-1506_pre_ATROPOS_GMM_PHYSICAL_VOLUME.nii.gz 49-13-1506_labels.nii.gz -lstat > 49-13-1506_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/49-13-1506;sed -i "1,2d" 49-13-1506_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/49-13-1506;sed "s/\s\+/,/g" 49-13-1506_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt > 49-13-1506_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv cd $(WORKDIR)/49-13-1506;sed -i "s/^/49-13-1506_pre_ATROPOS_GMM_PHYSICAL_VOLUME,/" 49-13-1506_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv job_49-13-1506_wCSV_pre_ATROPOS_GMM_POSTERIORS1: cd $(WORKDIR)/49-13-1506;c3d 49-13-1506_pre_ATROPOS_GMM_POSTERIORS1.nii.gz 49-13-1506_labels.nii.gz -lstat > 49-13-1506_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/49-13-1506;sed -i "1,2d" 49-13-1506_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/49-13-1506;sed "s/\s\+/,/g" 49-13-1506_pre_ATROPOS_GMM_POSTERIORS1.txt > 49-13-1506_pre_ATROPOS_GMM_POSTERIORS1.csv cd $(WORKDIR)/49-13-1506;sed -i "s/^/49-13-1506_pre_ATROPOS_GMM_POSTERIORS1,/" 49-13-1506_pre_ATROPOS_GMM_POSTERIORS1.csv job_49-13-1506_wCSV_pre_ATROPOS_GMM_POSTERIORS2: cd $(WORKDIR)/49-13-1506;c3d 49-13-1506_pre_ATROPOS_GMM_POSTERIORS2.nii.gz 49-13-1506_labels.nii.gz -lstat > 49-13-1506_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/49-13-1506;sed -i "1,2d" 49-13-1506_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/49-13-1506;sed "s/\s\+/,/g" 49-13-1506_pre_ATROPOS_GMM_POSTERIORS2.txt > 49-13-1506_pre_ATROPOS_GMM_POSTERIORS2.csv cd $(WORKDIR)/49-13-1506;sed -i "s/^/49-13-1506_pre_ATROPOS_GMM_POSTERIORS2,/" 49-13-1506_pre_ATROPOS_GMM_POSTERIORS2.csv job_49-13-1506_wCSV_pre_ATROPOS_GMM_POSTERIORS3: cd $(WORKDIR)/49-13-1506;c3d 49-13-1506_pre_ATROPOS_GMM_POSTERIORS3.nii.gz 49-13-1506_labels.nii.gz -lstat > 49-13-1506_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/49-13-1506;sed -i "1,2d" 49-13-1506_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/49-13-1506;sed "s/\s\+/,/g" 49-13-1506_pre_ATROPOS_GMM_POSTERIORS3.txt > 49-13-1506_pre_ATROPOS_GMM_POSTERIORS3.csv cd $(WORKDIR)/49-13-1506;sed -i "s/^/49-13-1506_pre_ATROPOS_GMM_POSTERIORS3,/" 49-13-1506_pre_ATROPOS_GMM_POSTERIORS3.csv job_49-13-1506_wCSV_pre_ATROPOS_GMM_POSTERIORS4: cd $(WORKDIR)/49-13-1506;c3d 49-13-1506_pre_ATROPOS_GMM_POSTERIORS4.nii.gz 49-13-1506_labels.nii.gz -lstat > 49-13-1506_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/49-13-1506;sed -i "1,2d" 49-13-1506_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/49-13-1506;sed "s/\s\+/,/g" 49-13-1506_pre_ATROPOS_GMM_POSTERIORS4.txt > 49-13-1506_pre_ATROPOS_GMM_POSTERIORS4.csv cd $(WORKDIR)/49-13-1506;sed -i "s/^/49-13-1506_pre_ATROPOS_GMM_POSTERIORS4,/" 49-13-1506_pre_ATROPOS_GMM_POSTERIORS4.csv job_49-13-1506_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO: cd $(WORKDIR)/49-13-1506;c3d 49-13-1506_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.nii.gz 49-13-1506_labels.nii.gz -lstat > 49-13-1506_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/49-13-1506;sed -i "1,2d" 49-13-1506_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/49-13-1506;sed "s/\s\+/,/g" 49-13-1506_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt > 49-13-1506_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv cd $(WORKDIR)/49-13-1506;sed -i "s/^/49-13-1506_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO,/" 49-13-1506_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv job_49-13-1506_wCSV_pre_ENTROPY_RADIUS_1: cd $(WORKDIR)/49-13-1506;c3d 49-13-1506_pre_ENTROPY_RADIUS_1.nii.gz 49-13-1506_labels.nii.gz -lstat > 49-13-1506_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/49-13-1506;sed -i "1,2d" 49-13-1506_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/49-13-1506;sed "s/\s\+/,/g" 49-13-1506_pre_ENTROPY_RADIUS_1.txt > 49-13-1506_pre_ENTROPY_RADIUS_1.csv cd $(WORKDIR)/49-13-1506;sed -i "s/^/49-13-1506_pre_ENTROPY_RADIUS_1,/" 49-13-1506_pre_ENTROPY_RADIUS_1.csv job_49-13-1506_wCSV_pre_ENTROPY_RADIUS_3: cd $(WORKDIR)/49-13-1506;c3d 49-13-1506_pre_ENTROPY_RADIUS_3.nii.gz 49-13-1506_labels.nii.gz -lstat > 49-13-1506_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/49-13-1506;sed -i "1,2d" 49-13-1506_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/49-13-1506;sed "s/\s\+/,/g" 49-13-1506_pre_ENTROPY_RADIUS_3.txt > 49-13-1506_pre_ENTROPY_RADIUS_3.csv cd $(WORKDIR)/49-13-1506;sed -i "s/^/49-13-1506_pre_ENTROPY_RADIUS_3,/" 49-13-1506_pre_ENTROPY_RADIUS_3.csv job_49-13-1506_wCSV_pre_MEAN_RADIUS_1: cd $(WORKDIR)/49-13-1506;c3d 49-13-1506_pre_MEAN_RADIUS_1.nii.gz 49-13-1506_labels.nii.gz -lstat > 49-13-1506_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/49-13-1506;sed -i "1,2d" 49-13-1506_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/49-13-1506;sed "s/\s\+/,/g" 49-13-1506_pre_MEAN_RADIUS_1.txt > 49-13-1506_pre_MEAN_RADIUS_1.csv cd $(WORKDIR)/49-13-1506;sed -i "s/^/49-13-1506_pre_MEAN_RADIUS_1,/" 49-13-1506_pre_MEAN_RADIUS_1.csv job_49-13-1506_wCSV_pre_MEAN_RADIUS_3: cd $(WORKDIR)/49-13-1506;c3d 49-13-1506_pre_MEAN_RADIUS_3.nii.gz 49-13-1506_labels.nii.gz -lstat > 49-13-1506_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/49-13-1506;sed -i "1,2d" 49-13-1506_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/49-13-1506;sed "s/\s\+/,/g" 49-13-1506_pre_MEAN_RADIUS_3.txt > 49-13-1506_pre_MEAN_RADIUS_3.csv cd $(WORKDIR)/49-13-1506;sed -i "s/^/49-13-1506_pre_MEAN_RADIUS_3,/" 49-13-1506_pre_MEAN_RADIUS_3.csv job_49-13-1506_wCSV_pre_NORMALIZED: cd $(WORKDIR)/49-13-1506;c3d 49-13-1506_pre_NORMALIZED.nii.gz 49-13-1506_labels.nii.gz -lstat > 49-13-1506_pre_NORMALIZED.txt cd $(WORKDIR)/49-13-1506;sed -i "1,2d" 49-13-1506_pre_NORMALIZED.txt cd $(WORKDIR)/49-13-1506;sed "s/\s\+/,/g" 49-13-1506_pre_NORMALIZED.txt > 49-13-1506_pre_NORMALIZED.csv cd $(WORKDIR)/49-13-1506;sed -i "s/^/49-13-1506_pre_NORMALIZED,/" 49-13-1506_pre_NORMALIZED.csv job_49-13-1506_wCSV_pre_SIGMA_RADIUS_1: cd $(WORKDIR)/49-13-1506;c3d 49-13-1506_pre_SIGMA_RADIUS_1.nii.gz 49-13-1506_labels.nii.gz -lstat > 49-13-1506_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/49-13-1506;sed -i "1,2d" 49-13-1506_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/49-13-1506;sed "s/\s\+/,/g" 49-13-1506_pre_SIGMA_RADIUS_1.txt > 49-13-1506_pre_SIGMA_RADIUS_1.csv cd $(WORKDIR)/49-13-1506;sed -i "s/^/49-13-1506_pre_SIGMA_RADIUS_1,/" 49-13-1506_pre_SIGMA_RADIUS_1.csv job_49-13-1506_wCSV_pre_SIGMA_RADIUS_3: cd $(WORKDIR)/49-13-1506;c3d 49-13-1506_pre_SIGMA_RADIUS_3.nii.gz 49-13-1506_labels.nii.gz -lstat > 49-13-1506_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/49-13-1506;sed -i "1,2d" 49-13-1506_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/49-13-1506;sed "s/\s\+/,/g" 49-13-1506_pre_SIGMA_RADIUS_3.txt > 49-13-1506_pre_SIGMA_RADIUS_3.csv cd $(WORKDIR)/49-13-1506;sed -i "s/^/49-13-1506_pre_SIGMA_RADIUS_3,/" 49-13-1506_pre_SIGMA_RADIUS_3.csv job_49-13-1506_wCSV_pre_SKEWNESS_RADIUS_1: cd $(WORKDIR)/49-13-1506;c3d 49-13-1506_pre_SKEWNESS_RADIUS_1.nii.gz 49-13-1506_labels.nii.gz -lstat > 49-13-1506_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/49-13-1506;sed -i "1,2d" 49-13-1506_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/49-13-1506;sed "s/\s\+/,/g" 49-13-1506_pre_SKEWNESS_RADIUS_1.txt > 49-13-1506_pre_SKEWNESS_RADIUS_1.csv cd $(WORKDIR)/49-13-1506;sed -i "s/^/49-13-1506_pre_SKEWNESS_RADIUS_1,/" 49-13-1506_pre_SKEWNESS_RADIUS_1.csv job_49-13-1506_wCSV_pre_SKEWNESS_RADIUS_3: cd $(WORKDIR)/49-13-1506;c3d 49-13-1506_pre_SKEWNESS_RADIUS_3.nii.gz 49-13-1506_labels.nii.gz -lstat > 49-13-1506_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/49-13-1506;sed -i "1,2d" 49-13-1506_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/49-13-1506;sed "s/\s\+/,/g" 49-13-1506_pre_SKEWNESS_RADIUS_3.txt > 49-13-1506_pre_SKEWNESS_RADIUS_3.csv cd $(WORKDIR)/49-13-1506;sed -i "s/^/49-13-1506_pre_SKEWNESS_RADIUS_3,/" 49-13-1506_pre_SKEWNESS_RADIUS_3.csv job_49-13-1506_wCSV_pre__DIFFERENCE: cd $(WORKDIR)/49-13-1506;c3d 49-13-1506_pre__DIFFERENCE.nii.gz 49-13-1506_labels.nii.gz -lstat > 49-13-1506_pre__DIFFERENCE.txt cd $(WORKDIR)/49-13-1506;sed -i "1,2d" 49-13-1506_pre__DIFFERENCE.txt cd $(WORKDIR)/49-13-1506;sed "s/\s\+/,/g" 49-13-1506_pre__DIFFERENCE.txt > 49-13-1506_pre__DIFFERENCE.csv cd $(WORKDIR)/49-13-1506;sed -i "s/^/49-13-1506_pre__DIFFERENCE,/" 49-13-1506_pre__DIFFERENCE.csv job_50-13-1507_crFI: cd $(WORKDIR)/50-13-1507;c3d 50-13-1507_grey.nii.gz 50-13-1507_labels.nii.gz -copy-transform -o 50-13-1507_labels.nii.gz cd $(WORKDIR)/50-13-1507;c3d 50-13-1507_grey.nii.gz -orient RAI -o 50-13-1507_grey.nii.gz cd $(WORKDIR)/50-13-1507;c3d 50-13-1507_labels.nii.gz -orient RAI -o 50-13-1507_labels.nii.gz cd $(WORKDIR)/50-13-1507;c3d 50-13-1507_labels.nii.gz -binarize -o 50-13-1507_mask.nii.gz cd $(WORKDIR)/50-13-1507;../createFeatureImagesOvary.sh -d 3 -x 50-13-1507_mask.nii.gz -l3 -n pre -a 50-13-1507_grey.nii.gz -f 0x2 -o ./50-13-1507_ -r 1 -r 3 -s 2 -b 4 job_50-13-1507_wCSV_NORMALIZED_DISTANCE: cd $(WORKDIR)/50-13-1507;c3d 50-13-1507_NORMALIZED_DISTANCE.nii.gz 50-13-1507_labels.nii.gz -lstat > 50-13-1507_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/50-13-1507;sed -i "1,2d" 50-13-1507_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/50-13-1507;sed "s/\s\+/,/g" 50-13-1507_NORMALIZED_DISTANCE.txt > 50-13-1507_NORMALIZED_DISTANCE.csv cd $(WORKDIR)/50-13-1507;sed -i "s/^/50-13-1507_NORMALIZED_DISTANCE,/" 50-13-1507_NORMALIZED_DISTANCE.csv job_50-13-1507_wCSV_pre_ATROPOS_GMM: cd $(WORKDIR)/50-13-1507;c3d 50-13-1507_pre_ATROPOS_GMM.nii.gz 50-13-1507_labels.nii.gz -lstat > 50-13-1507_pre_ATROPOS_GMM.txt cd $(WORKDIR)/50-13-1507;sed -i "1,2d" 50-13-1507_pre_ATROPOS_GMM.txt cd $(WORKDIR)/50-13-1507;sed "s/\s\+/,/g" 50-13-1507_pre_ATROPOS_GMM.txt > 50-13-1507_pre_ATROPOS_GMM.csv cd $(WORKDIR)/50-13-1507;sed -i "s/^/50-13-1507_pre_ATROPOS_GMM,/" 50-13-1507_pre_ATROPOS_GMM.csv job_50-13-1507_wCSV_pre_ATROPOS_GMM_ECCENTRICITY: cd $(WORKDIR)/50-13-1507;c3d 50-13-1507_pre_ATROPOS_GMM_ECCENTRICITY.nii.gz 50-13-1507_labels.nii.gz -lstat > 50-13-1507_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/50-13-1507;sed -i "1,2d" 50-13-1507_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/50-13-1507;sed "s/\s\+/,/g" 50-13-1507_pre_ATROPOS_GMM_ECCENTRICITY.txt > 50-13-1507_pre_ATROPOS_GMM_ECCENTRICITY.csv cd $(WORKDIR)/50-13-1507;sed -i "s/^/50-13-1507_pre_ATROPOS_GMM_ECCENTRICITY,/" 50-13-1507_pre_ATROPOS_GMM_ECCENTRICITY.csv job_50-13-1507_wCSV_pre_ATROPOS_GMM_ELONGATION: cd $(WORKDIR)/50-13-1507;c3d 50-13-1507_pre_ATROPOS_GMM_ELONGATION.nii.gz 50-13-1507_labels.nii.gz -lstat > 50-13-1507_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/50-13-1507;sed -i "1,2d" 50-13-1507_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/50-13-1507;sed "s/\s\+/,/g" 50-13-1507_pre_ATROPOS_GMM_ELONGATION.txt > 50-13-1507_pre_ATROPOS_GMM_ELONGATION.csv cd $(WORKDIR)/50-13-1507;sed -i "s/^/50-13-1507_pre_ATROPOS_GMM_ELONGATION,/" 50-13-1507_pre_ATROPOS_GMM_ELONGATION.csv job_50-13-1507_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE: cd $(WORKDIR)/50-13-1507;c3d 50-13-1507_pre_ATROPOS_GMM_LABEL3_DISTANCE.nii.gz 50-13-1507_labels.nii.gz -lstat > 50-13-1507_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/50-13-1507;sed -i "1,2d" 50-13-1507_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/50-13-1507;sed "s/\s\+/,/g" 50-13-1507_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt > 50-13-1507_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv cd $(WORKDIR)/50-13-1507;sed -i "s/^/50-13-1507_pre_ATROPOS_GMM_LABEL3_DISTANCE,/" 50-13-1507_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv job_50-13-1507_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME: cd $(WORKDIR)/50-13-1507;c3d 50-13-1507_pre_ATROPOS_GMM_PHYSICAL_VOLUME.nii.gz 50-13-1507_labels.nii.gz -lstat > 50-13-1507_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/50-13-1507;sed -i "1,2d" 50-13-1507_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/50-13-1507;sed "s/\s\+/,/g" 50-13-1507_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt > 50-13-1507_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv cd $(WORKDIR)/50-13-1507;sed -i "s/^/50-13-1507_pre_ATROPOS_GMM_PHYSICAL_VOLUME,/" 50-13-1507_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv job_50-13-1507_wCSV_pre_ATROPOS_GMM_POSTERIORS1: cd $(WORKDIR)/50-13-1507;c3d 50-13-1507_pre_ATROPOS_GMM_POSTERIORS1.nii.gz 50-13-1507_labels.nii.gz -lstat > 50-13-1507_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/50-13-1507;sed -i "1,2d" 50-13-1507_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/50-13-1507;sed "s/\s\+/,/g" 50-13-1507_pre_ATROPOS_GMM_POSTERIORS1.txt > 50-13-1507_pre_ATROPOS_GMM_POSTERIORS1.csv cd $(WORKDIR)/50-13-1507;sed -i "s/^/50-13-1507_pre_ATROPOS_GMM_POSTERIORS1,/" 50-13-1507_pre_ATROPOS_GMM_POSTERIORS1.csv job_50-13-1507_wCSV_pre_ATROPOS_GMM_POSTERIORS2: cd $(WORKDIR)/50-13-1507;c3d 50-13-1507_pre_ATROPOS_GMM_POSTERIORS2.nii.gz 50-13-1507_labels.nii.gz -lstat > 50-13-1507_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/50-13-1507;sed -i "1,2d" 50-13-1507_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/50-13-1507;sed "s/\s\+/,/g" 50-13-1507_pre_ATROPOS_GMM_POSTERIORS2.txt > 50-13-1507_pre_ATROPOS_GMM_POSTERIORS2.csv cd $(WORKDIR)/50-13-1507;sed -i "s/^/50-13-1507_pre_ATROPOS_GMM_POSTERIORS2,/" 50-13-1507_pre_ATROPOS_GMM_POSTERIORS2.csv job_50-13-1507_wCSV_pre_ATROPOS_GMM_POSTERIORS3: cd $(WORKDIR)/50-13-1507;c3d 50-13-1507_pre_ATROPOS_GMM_POSTERIORS3.nii.gz 50-13-1507_labels.nii.gz -lstat > 50-13-1507_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/50-13-1507;sed -i "1,2d" 50-13-1507_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/50-13-1507;sed "s/\s\+/,/g" 50-13-1507_pre_ATROPOS_GMM_POSTERIORS3.txt > 50-13-1507_pre_ATROPOS_GMM_POSTERIORS3.csv cd $(WORKDIR)/50-13-1507;sed -i "s/^/50-13-1507_pre_ATROPOS_GMM_POSTERIORS3,/" 50-13-1507_pre_ATROPOS_GMM_POSTERIORS3.csv job_50-13-1507_wCSV_pre_ATROPOS_GMM_POSTERIORS4: cd $(WORKDIR)/50-13-1507;c3d 50-13-1507_pre_ATROPOS_GMM_POSTERIORS4.nii.gz 50-13-1507_labels.nii.gz -lstat > 50-13-1507_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/50-13-1507;sed -i "1,2d" 50-13-1507_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/50-13-1507;sed "s/\s\+/,/g" 50-13-1507_pre_ATROPOS_GMM_POSTERIORS4.txt > 50-13-1507_pre_ATROPOS_GMM_POSTERIORS4.csv cd $(WORKDIR)/50-13-1507;sed -i "s/^/50-13-1507_pre_ATROPOS_GMM_POSTERIORS4,/" 50-13-1507_pre_ATROPOS_GMM_POSTERIORS4.csv job_50-13-1507_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO: cd $(WORKDIR)/50-13-1507;c3d 50-13-1507_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.nii.gz 50-13-1507_labels.nii.gz -lstat > 50-13-1507_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/50-13-1507;sed -i "1,2d" 50-13-1507_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/50-13-1507;sed "s/\s\+/,/g" 50-13-1507_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt > 50-13-1507_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv cd $(WORKDIR)/50-13-1507;sed -i "s/^/50-13-1507_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO,/" 50-13-1507_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv job_50-13-1507_wCSV_pre_ENTROPY_RADIUS_1: cd $(WORKDIR)/50-13-1507;c3d 50-13-1507_pre_ENTROPY_RADIUS_1.nii.gz 50-13-1507_labels.nii.gz -lstat > 50-13-1507_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/50-13-1507;sed -i "1,2d" 50-13-1507_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/50-13-1507;sed "s/\s\+/,/g" 50-13-1507_pre_ENTROPY_RADIUS_1.txt > 50-13-1507_pre_ENTROPY_RADIUS_1.csv cd $(WORKDIR)/50-13-1507;sed -i "s/^/50-13-1507_pre_ENTROPY_RADIUS_1,/" 50-13-1507_pre_ENTROPY_RADIUS_1.csv job_50-13-1507_wCSV_pre_ENTROPY_RADIUS_3: cd $(WORKDIR)/50-13-1507;c3d 50-13-1507_pre_ENTROPY_RADIUS_3.nii.gz 50-13-1507_labels.nii.gz -lstat > 50-13-1507_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/50-13-1507;sed -i "1,2d" 50-13-1507_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/50-13-1507;sed "s/\s\+/,/g" 50-13-1507_pre_ENTROPY_RADIUS_3.txt > 50-13-1507_pre_ENTROPY_RADIUS_3.csv cd $(WORKDIR)/50-13-1507;sed -i "s/^/50-13-1507_pre_ENTROPY_RADIUS_3,/" 50-13-1507_pre_ENTROPY_RADIUS_3.csv job_50-13-1507_wCSV_pre_MEAN_RADIUS_1: cd $(WORKDIR)/50-13-1507;c3d 50-13-1507_pre_MEAN_RADIUS_1.nii.gz 50-13-1507_labels.nii.gz -lstat > 50-13-1507_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/50-13-1507;sed -i "1,2d" 50-13-1507_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/50-13-1507;sed "s/\s\+/,/g" 50-13-1507_pre_MEAN_RADIUS_1.txt > 50-13-1507_pre_MEAN_RADIUS_1.csv cd $(WORKDIR)/50-13-1507;sed -i "s/^/50-13-1507_pre_MEAN_RADIUS_1,/" 50-13-1507_pre_MEAN_RADIUS_1.csv job_50-13-1507_wCSV_pre_MEAN_RADIUS_3: cd $(WORKDIR)/50-13-1507;c3d 50-13-1507_pre_MEAN_RADIUS_3.nii.gz 50-13-1507_labels.nii.gz -lstat > 50-13-1507_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/50-13-1507;sed -i "1,2d" 50-13-1507_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/50-13-1507;sed "s/\s\+/,/g" 50-13-1507_pre_MEAN_RADIUS_3.txt > 50-13-1507_pre_MEAN_RADIUS_3.csv cd $(WORKDIR)/50-13-1507;sed -i "s/^/50-13-1507_pre_MEAN_RADIUS_3,/" 50-13-1507_pre_MEAN_RADIUS_3.csv job_50-13-1507_wCSV_pre_NORMALIZED: cd $(WORKDIR)/50-13-1507;c3d 50-13-1507_pre_NORMALIZED.nii.gz 50-13-1507_labels.nii.gz -lstat > 50-13-1507_pre_NORMALIZED.txt cd $(WORKDIR)/50-13-1507;sed -i "1,2d" 50-13-1507_pre_NORMALIZED.txt cd $(WORKDIR)/50-13-1507;sed "s/\s\+/,/g" 50-13-1507_pre_NORMALIZED.txt > 50-13-1507_pre_NORMALIZED.csv cd $(WORKDIR)/50-13-1507;sed -i "s/^/50-13-1507_pre_NORMALIZED,/" 50-13-1507_pre_NORMALIZED.csv job_50-13-1507_wCSV_pre_SIGMA_RADIUS_1: cd $(WORKDIR)/50-13-1507;c3d 50-13-1507_pre_SIGMA_RADIUS_1.nii.gz 50-13-1507_labels.nii.gz -lstat > 50-13-1507_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/50-13-1507;sed -i "1,2d" 50-13-1507_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/50-13-1507;sed "s/\s\+/,/g" 50-13-1507_pre_SIGMA_RADIUS_1.txt > 50-13-1507_pre_SIGMA_RADIUS_1.csv cd $(WORKDIR)/50-13-1507;sed -i "s/^/50-13-1507_pre_SIGMA_RADIUS_1,/" 50-13-1507_pre_SIGMA_RADIUS_1.csv job_50-13-1507_wCSV_pre_SIGMA_RADIUS_3: cd $(WORKDIR)/50-13-1507;c3d 50-13-1507_pre_SIGMA_RADIUS_3.nii.gz 50-13-1507_labels.nii.gz -lstat > 50-13-1507_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/50-13-1507;sed -i "1,2d" 50-13-1507_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/50-13-1507;sed "s/\s\+/,/g" 50-13-1507_pre_SIGMA_RADIUS_3.txt > 50-13-1507_pre_SIGMA_RADIUS_3.csv cd $(WORKDIR)/50-13-1507;sed -i "s/^/50-13-1507_pre_SIGMA_RADIUS_3,/" 50-13-1507_pre_SIGMA_RADIUS_3.csv job_50-13-1507_wCSV_pre_SKEWNESS_RADIUS_1: cd $(WORKDIR)/50-13-1507;c3d 50-13-1507_pre_SKEWNESS_RADIUS_1.nii.gz 50-13-1507_labels.nii.gz -lstat > 50-13-1507_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/50-13-1507;sed -i "1,2d" 50-13-1507_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/50-13-1507;sed "s/\s\+/,/g" 50-13-1507_pre_SKEWNESS_RADIUS_1.txt > 50-13-1507_pre_SKEWNESS_RADIUS_1.csv cd $(WORKDIR)/50-13-1507;sed -i "s/^/50-13-1507_pre_SKEWNESS_RADIUS_1,/" 50-13-1507_pre_SKEWNESS_RADIUS_1.csv job_50-13-1507_wCSV_pre_SKEWNESS_RADIUS_3: cd $(WORKDIR)/50-13-1507;c3d 50-13-1507_pre_SKEWNESS_RADIUS_3.nii.gz 50-13-1507_labels.nii.gz -lstat > 50-13-1507_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/50-13-1507;sed -i "1,2d" 50-13-1507_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/50-13-1507;sed "s/\s\+/,/g" 50-13-1507_pre_SKEWNESS_RADIUS_3.txt > 50-13-1507_pre_SKEWNESS_RADIUS_3.csv cd $(WORKDIR)/50-13-1507;sed -i "s/^/50-13-1507_pre_SKEWNESS_RADIUS_3,/" 50-13-1507_pre_SKEWNESS_RADIUS_3.csv job_50-13-1507_wCSV_pre__DIFFERENCE: cd $(WORKDIR)/50-13-1507;c3d 50-13-1507_pre__DIFFERENCE.nii.gz 50-13-1507_labels.nii.gz -lstat > 50-13-1507_pre__DIFFERENCE.txt cd $(WORKDIR)/50-13-1507;sed -i "1,2d" 50-13-1507_pre__DIFFERENCE.txt cd $(WORKDIR)/50-13-1507;sed "s/\s\+/,/g" 50-13-1507_pre__DIFFERENCE.txt > 50-13-1507_pre__DIFFERENCE.csv cd $(WORKDIR)/50-13-1507;sed -i "s/^/50-13-1507_pre__DIFFERENCE,/" 50-13-1507_pre__DIFFERENCE.csv job_51-13-1509_crFI: cd $(WORKDIR)/51-13-1509;c3d 51-13-1509_grey.nii.gz 51-13-1509_labels.nii.gz -copy-transform -o 51-13-1509_labels.nii.gz cd $(WORKDIR)/51-13-1509;c3d 51-13-1509_grey.nii.gz -orient RAI -o 51-13-1509_grey.nii.gz cd $(WORKDIR)/51-13-1509;c3d 51-13-1509_labels.nii.gz -orient RAI -o 51-13-1509_labels.nii.gz cd $(WORKDIR)/51-13-1509;c3d 51-13-1509_labels.nii.gz -binarize -o 51-13-1509_mask.nii.gz cd $(WORKDIR)/51-13-1509;../createFeatureImagesOvary.sh -d 3 -x 51-13-1509_mask.nii.gz -l3 -n pre -a 51-13-1509_grey.nii.gz -f 0x2 -o ./51-13-1509_ -r 1 -r 3 -s 2 -b 4 job_51-13-1509_wCSV_NORMALIZED_DISTANCE: cd $(WORKDIR)/51-13-1509;c3d 51-13-1509_NORMALIZED_DISTANCE.nii.gz 51-13-1509_labels.nii.gz -lstat > 51-13-1509_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/51-13-1509;sed -i "1,2d" 51-13-1509_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/51-13-1509;sed "s/\s\+/,/g" 51-13-1509_NORMALIZED_DISTANCE.txt > 51-13-1509_NORMALIZED_DISTANCE.csv cd $(WORKDIR)/51-13-1509;sed -i "s/^/51-13-1509_NORMALIZED_DISTANCE,/" 51-13-1509_NORMALIZED_DISTANCE.csv job_51-13-1509_wCSV_pre_ATROPOS_GMM: cd $(WORKDIR)/51-13-1509;c3d 51-13-1509_pre_ATROPOS_GMM.nii.gz 51-13-1509_labels.nii.gz -lstat > 51-13-1509_pre_ATROPOS_GMM.txt cd $(WORKDIR)/51-13-1509;sed -i "1,2d" 51-13-1509_pre_ATROPOS_GMM.txt cd $(WORKDIR)/51-13-1509;sed "s/\s\+/,/g" 51-13-1509_pre_ATROPOS_GMM.txt > 51-13-1509_pre_ATROPOS_GMM.csv cd $(WORKDIR)/51-13-1509;sed -i "s/^/51-13-1509_pre_ATROPOS_GMM,/" 51-13-1509_pre_ATROPOS_GMM.csv job_51-13-1509_wCSV_pre_ATROPOS_GMM_ECCENTRICITY: cd $(WORKDIR)/51-13-1509;c3d 51-13-1509_pre_ATROPOS_GMM_ECCENTRICITY.nii.gz 51-13-1509_labels.nii.gz -lstat > 51-13-1509_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/51-13-1509;sed -i "1,2d" 51-13-1509_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/51-13-1509;sed "s/\s\+/,/g" 51-13-1509_pre_ATROPOS_GMM_ECCENTRICITY.txt > 51-13-1509_pre_ATROPOS_GMM_ECCENTRICITY.csv cd $(WORKDIR)/51-13-1509;sed -i "s/^/51-13-1509_pre_ATROPOS_GMM_ECCENTRICITY,/" 51-13-1509_pre_ATROPOS_GMM_ECCENTRICITY.csv job_51-13-1509_wCSV_pre_ATROPOS_GMM_ELONGATION: cd $(WORKDIR)/51-13-1509;c3d 51-13-1509_pre_ATROPOS_GMM_ELONGATION.nii.gz 51-13-1509_labels.nii.gz -lstat > 51-13-1509_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/51-13-1509;sed -i "1,2d" 51-13-1509_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/51-13-1509;sed "s/\s\+/,/g" 51-13-1509_pre_ATROPOS_GMM_ELONGATION.txt > 51-13-1509_pre_ATROPOS_GMM_ELONGATION.csv cd $(WORKDIR)/51-13-1509;sed -i "s/^/51-13-1509_pre_ATROPOS_GMM_ELONGATION,/" 51-13-1509_pre_ATROPOS_GMM_ELONGATION.csv job_51-13-1509_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE: cd $(WORKDIR)/51-13-1509;c3d 51-13-1509_pre_ATROPOS_GMM_LABEL3_DISTANCE.nii.gz 51-13-1509_labels.nii.gz -lstat > 51-13-1509_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/51-13-1509;sed -i "1,2d" 51-13-1509_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/51-13-1509;sed "s/\s\+/,/g" 51-13-1509_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt > 51-13-1509_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv cd $(WORKDIR)/51-13-1509;sed -i "s/^/51-13-1509_pre_ATROPOS_GMM_LABEL3_DISTANCE,/" 51-13-1509_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv job_51-13-1509_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME: cd $(WORKDIR)/51-13-1509;c3d 51-13-1509_pre_ATROPOS_GMM_PHYSICAL_VOLUME.nii.gz 51-13-1509_labels.nii.gz -lstat > 51-13-1509_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/51-13-1509;sed -i "1,2d" 51-13-1509_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/51-13-1509;sed "s/\s\+/,/g" 51-13-1509_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt > 51-13-1509_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv cd $(WORKDIR)/51-13-1509;sed -i "s/^/51-13-1509_pre_ATROPOS_GMM_PHYSICAL_VOLUME,/" 51-13-1509_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv job_51-13-1509_wCSV_pre_ATROPOS_GMM_POSTERIORS1: cd $(WORKDIR)/51-13-1509;c3d 51-13-1509_pre_ATROPOS_GMM_POSTERIORS1.nii.gz 51-13-1509_labels.nii.gz -lstat > 51-13-1509_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/51-13-1509;sed -i "1,2d" 51-13-1509_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/51-13-1509;sed "s/\s\+/,/g" 51-13-1509_pre_ATROPOS_GMM_POSTERIORS1.txt > 51-13-1509_pre_ATROPOS_GMM_POSTERIORS1.csv cd $(WORKDIR)/51-13-1509;sed -i "s/^/51-13-1509_pre_ATROPOS_GMM_POSTERIORS1,/" 51-13-1509_pre_ATROPOS_GMM_POSTERIORS1.csv job_51-13-1509_wCSV_pre_ATROPOS_GMM_POSTERIORS2: cd $(WORKDIR)/51-13-1509;c3d 51-13-1509_pre_ATROPOS_GMM_POSTERIORS2.nii.gz 51-13-1509_labels.nii.gz -lstat > 51-13-1509_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/51-13-1509;sed -i "1,2d" 51-13-1509_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/51-13-1509;sed "s/\s\+/,/g" 51-13-1509_pre_ATROPOS_GMM_POSTERIORS2.txt > 51-13-1509_pre_ATROPOS_GMM_POSTERIORS2.csv cd $(WORKDIR)/51-13-1509;sed -i "s/^/51-13-1509_pre_ATROPOS_GMM_POSTERIORS2,/" 51-13-1509_pre_ATROPOS_GMM_POSTERIORS2.csv job_51-13-1509_wCSV_pre_ATROPOS_GMM_POSTERIORS3: cd $(WORKDIR)/51-13-1509;c3d 51-13-1509_pre_ATROPOS_GMM_POSTERIORS3.nii.gz 51-13-1509_labels.nii.gz -lstat > 51-13-1509_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/51-13-1509;sed -i "1,2d" 51-13-1509_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/51-13-1509;sed "s/\s\+/,/g" 51-13-1509_pre_ATROPOS_GMM_POSTERIORS3.txt > 51-13-1509_pre_ATROPOS_GMM_POSTERIORS3.csv cd $(WORKDIR)/51-13-1509;sed -i "s/^/51-13-1509_pre_ATROPOS_GMM_POSTERIORS3,/" 51-13-1509_pre_ATROPOS_GMM_POSTERIORS3.csv job_51-13-1509_wCSV_pre_ATROPOS_GMM_POSTERIORS4: cd $(WORKDIR)/51-13-1509;c3d 51-13-1509_pre_ATROPOS_GMM_POSTERIORS4.nii.gz 51-13-1509_labels.nii.gz -lstat > 51-13-1509_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/51-13-1509;sed -i "1,2d" 51-13-1509_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/51-13-1509;sed "s/\s\+/,/g" 51-13-1509_pre_ATROPOS_GMM_POSTERIORS4.txt > 51-13-1509_pre_ATROPOS_GMM_POSTERIORS4.csv cd $(WORKDIR)/51-13-1509;sed -i "s/^/51-13-1509_pre_ATROPOS_GMM_POSTERIORS4,/" 51-13-1509_pre_ATROPOS_GMM_POSTERIORS4.csv job_51-13-1509_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO: cd $(WORKDIR)/51-13-1509;c3d 51-13-1509_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.nii.gz 51-13-1509_labels.nii.gz -lstat > 51-13-1509_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/51-13-1509;sed -i "1,2d" 51-13-1509_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/51-13-1509;sed "s/\s\+/,/g" 51-13-1509_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt > 51-13-1509_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv cd $(WORKDIR)/51-13-1509;sed -i "s/^/51-13-1509_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO,/" 51-13-1509_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv job_51-13-1509_wCSV_pre_ENTROPY_RADIUS_1: cd $(WORKDIR)/51-13-1509;c3d 51-13-1509_pre_ENTROPY_RADIUS_1.nii.gz 51-13-1509_labels.nii.gz -lstat > 51-13-1509_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/51-13-1509;sed -i "1,2d" 51-13-1509_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/51-13-1509;sed "s/\s\+/,/g" 51-13-1509_pre_ENTROPY_RADIUS_1.txt > 51-13-1509_pre_ENTROPY_RADIUS_1.csv cd $(WORKDIR)/51-13-1509;sed -i "s/^/51-13-1509_pre_ENTROPY_RADIUS_1,/" 51-13-1509_pre_ENTROPY_RADIUS_1.csv job_51-13-1509_wCSV_pre_ENTROPY_RADIUS_3: cd $(WORKDIR)/51-13-1509;c3d 51-13-1509_pre_ENTROPY_RADIUS_3.nii.gz 51-13-1509_labels.nii.gz -lstat > 51-13-1509_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/51-13-1509;sed -i "1,2d" 51-13-1509_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/51-13-1509;sed "s/\s\+/,/g" 51-13-1509_pre_ENTROPY_RADIUS_3.txt > 51-13-1509_pre_ENTROPY_RADIUS_3.csv cd $(WORKDIR)/51-13-1509;sed -i "s/^/51-13-1509_pre_ENTROPY_RADIUS_3,/" 51-13-1509_pre_ENTROPY_RADIUS_3.csv job_51-13-1509_wCSV_pre_MEAN_RADIUS_1: cd $(WORKDIR)/51-13-1509;c3d 51-13-1509_pre_MEAN_RADIUS_1.nii.gz 51-13-1509_labels.nii.gz -lstat > 51-13-1509_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/51-13-1509;sed -i "1,2d" 51-13-1509_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/51-13-1509;sed "s/\s\+/,/g" 51-13-1509_pre_MEAN_RADIUS_1.txt > 51-13-1509_pre_MEAN_RADIUS_1.csv cd $(WORKDIR)/51-13-1509;sed -i "s/^/51-13-1509_pre_MEAN_RADIUS_1,/" 51-13-1509_pre_MEAN_RADIUS_1.csv job_51-13-1509_wCSV_pre_MEAN_RADIUS_3: cd $(WORKDIR)/51-13-1509;c3d 51-13-1509_pre_MEAN_RADIUS_3.nii.gz 51-13-1509_labels.nii.gz -lstat > 51-13-1509_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/51-13-1509;sed -i "1,2d" 51-13-1509_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/51-13-1509;sed "s/\s\+/,/g" 51-13-1509_pre_MEAN_RADIUS_3.txt > 51-13-1509_pre_MEAN_RADIUS_3.csv cd $(WORKDIR)/51-13-1509;sed -i "s/^/51-13-1509_pre_MEAN_RADIUS_3,/" 51-13-1509_pre_MEAN_RADIUS_3.csv job_51-13-1509_wCSV_pre_NORMALIZED: cd $(WORKDIR)/51-13-1509;c3d 51-13-1509_pre_NORMALIZED.nii.gz 51-13-1509_labels.nii.gz -lstat > 51-13-1509_pre_NORMALIZED.txt cd $(WORKDIR)/51-13-1509;sed -i "1,2d" 51-13-1509_pre_NORMALIZED.txt cd $(WORKDIR)/51-13-1509;sed "s/\s\+/,/g" 51-13-1509_pre_NORMALIZED.txt > 51-13-1509_pre_NORMALIZED.csv cd $(WORKDIR)/51-13-1509;sed -i "s/^/51-13-1509_pre_NORMALIZED,/" 51-13-1509_pre_NORMALIZED.csv job_51-13-1509_wCSV_pre_SIGMA_RADIUS_1: cd $(WORKDIR)/51-13-1509;c3d 51-13-1509_pre_SIGMA_RADIUS_1.nii.gz 51-13-1509_labels.nii.gz -lstat > 51-13-1509_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/51-13-1509;sed -i "1,2d" 51-13-1509_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/51-13-1509;sed "s/\s\+/,/g" 51-13-1509_pre_SIGMA_RADIUS_1.txt > 51-13-1509_pre_SIGMA_RADIUS_1.csv cd $(WORKDIR)/51-13-1509;sed -i "s/^/51-13-1509_pre_SIGMA_RADIUS_1,/" 51-13-1509_pre_SIGMA_RADIUS_1.csv job_51-13-1509_wCSV_pre_SIGMA_RADIUS_3: cd $(WORKDIR)/51-13-1509;c3d 51-13-1509_pre_SIGMA_RADIUS_3.nii.gz 51-13-1509_labels.nii.gz -lstat > 51-13-1509_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/51-13-1509;sed -i "1,2d" 51-13-1509_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/51-13-1509;sed "s/\s\+/,/g" 51-13-1509_pre_SIGMA_RADIUS_3.txt > 51-13-1509_pre_SIGMA_RADIUS_3.csv cd $(WORKDIR)/51-13-1509;sed -i "s/^/51-13-1509_pre_SIGMA_RADIUS_3,/" 51-13-1509_pre_SIGMA_RADIUS_3.csv job_51-13-1509_wCSV_pre_SKEWNESS_RADIUS_1: cd $(WORKDIR)/51-13-1509;c3d 51-13-1509_pre_SKEWNESS_RADIUS_1.nii.gz 51-13-1509_labels.nii.gz -lstat > 51-13-1509_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/51-13-1509;sed -i "1,2d" 51-13-1509_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/51-13-1509;sed "s/\s\+/,/g" 51-13-1509_pre_SKEWNESS_RADIUS_1.txt > 51-13-1509_pre_SKEWNESS_RADIUS_1.csv cd $(WORKDIR)/51-13-1509;sed -i "s/^/51-13-1509_pre_SKEWNESS_RADIUS_1,/" 51-13-1509_pre_SKEWNESS_RADIUS_1.csv job_51-13-1509_wCSV_pre_SKEWNESS_RADIUS_3: cd $(WORKDIR)/51-13-1509;c3d 51-13-1509_pre_SKEWNESS_RADIUS_3.nii.gz 51-13-1509_labels.nii.gz -lstat > 51-13-1509_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/51-13-1509;sed -i "1,2d" 51-13-1509_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/51-13-1509;sed "s/\s\+/,/g" 51-13-1509_pre_SKEWNESS_RADIUS_3.txt > 51-13-1509_pre_SKEWNESS_RADIUS_3.csv cd $(WORKDIR)/51-13-1509;sed -i "s/^/51-13-1509_pre_SKEWNESS_RADIUS_3,/" 51-13-1509_pre_SKEWNESS_RADIUS_3.csv job_51-13-1509_wCSV_pre__DIFFERENCE: cd $(WORKDIR)/51-13-1509;c3d 51-13-1509_pre__DIFFERENCE.nii.gz 51-13-1509_labels.nii.gz -lstat > 51-13-1509_pre__DIFFERENCE.txt cd $(WORKDIR)/51-13-1509;sed -i "1,2d" 51-13-1509_pre__DIFFERENCE.txt cd $(WORKDIR)/51-13-1509;sed "s/\s\+/,/g" 51-13-1509_pre__DIFFERENCE.txt > 51-13-1509_pre__DIFFERENCE.csv cd $(WORKDIR)/51-13-1509;sed -i "s/^/51-13-1509_pre__DIFFERENCE,/" 51-13-1509_pre__DIFFERENCE.csv job_52-13-1511_crFI: cd $(WORKDIR)/52-13-1511;c3d 52-13-1511_grey.nii.gz 52-13-1511_labels.nii.gz -copy-transform -o 52-13-1511_labels.nii.gz cd $(WORKDIR)/52-13-1511;c3d 52-13-1511_grey.nii.gz -orient RAI -o 52-13-1511_grey.nii.gz cd $(WORKDIR)/52-13-1511;c3d 52-13-1511_labels.nii.gz -orient RAI -o 52-13-1511_labels.nii.gz cd $(WORKDIR)/52-13-1511;c3d 52-13-1511_labels.nii.gz -binarize -o 52-13-1511_mask.nii.gz cd $(WORKDIR)/52-13-1511;../createFeatureImagesOvary.sh -d 3 -x 52-13-1511_mask.nii.gz -l3 -n pre -a 52-13-1511_grey.nii.gz -f 0x2 -o ./52-13-1511_ -r 1 -r 3 -s 2 -b 4 job_52-13-1511_wCSV_NORMALIZED_DISTANCE: cd $(WORKDIR)/52-13-1511;c3d 52-13-1511_NORMALIZED_DISTANCE.nii.gz 52-13-1511_labels.nii.gz -lstat > 52-13-1511_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/52-13-1511;sed -i "1,2d" 52-13-1511_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/52-13-1511;sed "s/\s\+/,/g" 52-13-1511_NORMALIZED_DISTANCE.txt > 52-13-1511_NORMALIZED_DISTANCE.csv cd $(WORKDIR)/52-13-1511;sed -i "s/^/52-13-1511_NORMALIZED_DISTANCE,/" 52-13-1511_NORMALIZED_DISTANCE.csv job_52-13-1511_wCSV_pre_ATROPOS_GMM: cd $(WORKDIR)/52-13-1511;c3d 52-13-1511_pre_ATROPOS_GMM.nii.gz 52-13-1511_labels.nii.gz -lstat > 52-13-1511_pre_ATROPOS_GMM.txt cd $(WORKDIR)/52-13-1511;sed -i "1,2d" 52-13-1511_pre_ATROPOS_GMM.txt cd $(WORKDIR)/52-13-1511;sed "s/\s\+/,/g" 52-13-1511_pre_ATROPOS_GMM.txt > 52-13-1511_pre_ATROPOS_GMM.csv cd $(WORKDIR)/52-13-1511;sed -i "s/^/52-13-1511_pre_ATROPOS_GMM,/" 52-13-1511_pre_ATROPOS_GMM.csv job_52-13-1511_wCSV_pre_ATROPOS_GMM_ECCENTRICITY: cd $(WORKDIR)/52-13-1511;c3d 52-13-1511_pre_ATROPOS_GMM_ECCENTRICITY.nii.gz 52-13-1511_labels.nii.gz -lstat > 52-13-1511_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/52-13-1511;sed -i "1,2d" 52-13-1511_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/52-13-1511;sed "s/\s\+/,/g" 52-13-1511_pre_ATROPOS_GMM_ECCENTRICITY.txt > 52-13-1511_pre_ATROPOS_GMM_ECCENTRICITY.csv cd $(WORKDIR)/52-13-1511;sed -i "s/^/52-13-1511_pre_ATROPOS_GMM_ECCENTRICITY,/" 52-13-1511_pre_ATROPOS_GMM_ECCENTRICITY.csv job_52-13-1511_wCSV_pre_ATROPOS_GMM_ELONGATION: cd $(WORKDIR)/52-13-1511;c3d 52-13-1511_pre_ATROPOS_GMM_ELONGATION.nii.gz 52-13-1511_labels.nii.gz -lstat > 52-13-1511_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/52-13-1511;sed -i "1,2d" 52-13-1511_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/52-13-1511;sed "s/\s\+/,/g" 52-13-1511_pre_ATROPOS_GMM_ELONGATION.txt > 52-13-1511_pre_ATROPOS_GMM_ELONGATION.csv cd $(WORKDIR)/52-13-1511;sed -i "s/^/52-13-1511_pre_ATROPOS_GMM_ELONGATION,/" 52-13-1511_pre_ATROPOS_GMM_ELONGATION.csv job_52-13-1511_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE: cd $(WORKDIR)/52-13-1511;c3d 52-13-1511_pre_ATROPOS_GMM_LABEL3_DISTANCE.nii.gz 52-13-1511_labels.nii.gz -lstat > 52-13-1511_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/52-13-1511;sed -i "1,2d" 52-13-1511_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/52-13-1511;sed "s/\s\+/,/g" 52-13-1511_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt > 52-13-1511_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv cd $(WORKDIR)/52-13-1511;sed -i "s/^/52-13-1511_pre_ATROPOS_GMM_LABEL3_DISTANCE,/" 52-13-1511_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv job_52-13-1511_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME: cd $(WORKDIR)/52-13-1511;c3d 52-13-1511_pre_ATROPOS_GMM_PHYSICAL_VOLUME.nii.gz 52-13-1511_labels.nii.gz -lstat > 52-13-1511_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/52-13-1511;sed -i "1,2d" 52-13-1511_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/52-13-1511;sed "s/\s\+/,/g" 52-13-1511_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt > 52-13-1511_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv cd $(WORKDIR)/52-13-1511;sed -i "s/^/52-13-1511_pre_ATROPOS_GMM_PHYSICAL_VOLUME,/" 52-13-1511_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv job_52-13-1511_wCSV_pre_ATROPOS_GMM_POSTERIORS1: cd $(WORKDIR)/52-13-1511;c3d 52-13-1511_pre_ATROPOS_GMM_POSTERIORS1.nii.gz 52-13-1511_labels.nii.gz -lstat > 52-13-1511_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/52-13-1511;sed -i "1,2d" 52-13-1511_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/52-13-1511;sed "s/\s\+/,/g" 52-13-1511_pre_ATROPOS_GMM_POSTERIORS1.txt > 52-13-1511_pre_ATROPOS_GMM_POSTERIORS1.csv cd $(WORKDIR)/52-13-1511;sed -i "s/^/52-13-1511_pre_ATROPOS_GMM_POSTERIORS1,/" 52-13-1511_pre_ATROPOS_GMM_POSTERIORS1.csv job_52-13-1511_wCSV_pre_ATROPOS_GMM_POSTERIORS2: cd $(WORKDIR)/52-13-1511;c3d 52-13-1511_pre_ATROPOS_GMM_POSTERIORS2.nii.gz 52-13-1511_labels.nii.gz -lstat > 52-13-1511_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/52-13-1511;sed -i "1,2d" 52-13-1511_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/52-13-1511;sed "s/\s\+/,/g" 52-13-1511_pre_ATROPOS_GMM_POSTERIORS2.txt > 52-13-1511_pre_ATROPOS_GMM_POSTERIORS2.csv cd $(WORKDIR)/52-13-1511;sed -i "s/^/52-13-1511_pre_ATROPOS_GMM_POSTERIORS2,/" 52-13-1511_pre_ATROPOS_GMM_POSTERIORS2.csv job_52-13-1511_wCSV_pre_ATROPOS_GMM_POSTERIORS3: cd $(WORKDIR)/52-13-1511;c3d 52-13-1511_pre_ATROPOS_GMM_POSTERIORS3.nii.gz 52-13-1511_labels.nii.gz -lstat > 52-13-1511_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/52-13-1511;sed -i "1,2d" 52-13-1511_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/52-13-1511;sed "s/\s\+/,/g" 52-13-1511_pre_ATROPOS_GMM_POSTERIORS3.txt > 52-13-1511_pre_ATROPOS_GMM_POSTERIORS3.csv cd $(WORKDIR)/52-13-1511;sed -i "s/^/52-13-1511_pre_ATROPOS_GMM_POSTERIORS3,/" 52-13-1511_pre_ATROPOS_GMM_POSTERIORS3.csv job_52-13-1511_wCSV_pre_ATROPOS_GMM_POSTERIORS4: cd $(WORKDIR)/52-13-1511;c3d 52-13-1511_pre_ATROPOS_GMM_POSTERIORS4.nii.gz 52-13-1511_labels.nii.gz -lstat > 52-13-1511_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/52-13-1511;sed -i "1,2d" 52-13-1511_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/52-13-1511;sed "s/\s\+/,/g" 52-13-1511_pre_ATROPOS_GMM_POSTERIORS4.txt > 52-13-1511_pre_ATROPOS_GMM_POSTERIORS4.csv cd $(WORKDIR)/52-13-1511;sed -i "s/^/52-13-1511_pre_ATROPOS_GMM_POSTERIORS4,/" 52-13-1511_pre_ATROPOS_GMM_POSTERIORS4.csv job_52-13-1511_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO: cd $(WORKDIR)/52-13-1511;c3d 52-13-1511_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.nii.gz 52-13-1511_labels.nii.gz -lstat > 52-13-1511_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/52-13-1511;sed -i "1,2d" 52-13-1511_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/52-13-1511;sed "s/\s\+/,/g" 52-13-1511_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt > 52-13-1511_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv cd $(WORKDIR)/52-13-1511;sed -i "s/^/52-13-1511_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO,/" 52-13-1511_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv job_52-13-1511_wCSV_pre_ENTROPY_RADIUS_1: cd $(WORKDIR)/52-13-1511;c3d 52-13-1511_pre_ENTROPY_RADIUS_1.nii.gz 52-13-1511_labels.nii.gz -lstat > 52-13-1511_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/52-13-1511;sed -i "1,2d" 52-13-1511_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/52-13-1511;sed "s/\s\+/,/g" 52-13-1511_pre_ENTROPY_RADIUS_1.txt > 52-13-1511_pre_ENTROPY_RADIUS_1.csv cd $(WORKDIR)/52-13-1511;sed -i "s/^/52-13-1511_pre_ENTROPY_RADIUS_1,/" 52-13-1511_pre_ENTROPY_RADIUS_1.csv job_52-13-1511_wCSV_pre_ENTROPY_RADIUS_3: cd $(WORKDIR)/52-13-1511;c3d 52-13-1511_pre_ENTROPY_RADIUS_3.nii.gz 52-13-1511_labels.nii.gz -lstat > 52-13-1511_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/52-13-1511;sed -i "1,2d" 52-13-1511_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/52-13-1511;sed "s/\s\+/,/g" 52-13-1511_pre_ENTROPY_RADIUS_3.txt > 52-13-1511_pre_ENTROPY_RADIUS_3.csv cd $(WORKDIR)/52-13-1511;sed -i "s/^/52-13-1511_pre_ENTROPY_RADIUS_3,/" 52-13-1511_pre_ENTROPY_RADIUS_3.csv job_52-13-1511_wCSV_pre_MEAN_RADIUS_1: cd $(WORKDIR)/52-13-1511;c3d 52-13-1511_pre_MEAN_RADIUS_1.nii.gz 52-13-1511_labels.nii.gz -lstat > 52-13-1511_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/52-13-1511;sed -i "1,2d" 52-13-1511_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/52-13-1511;sed "s/\s\+/,/g" 52-13-1511_pre_MEAN_RADIUS_1.txt > 52-13-1511_pre_MEAN_RADIUS_1.csv cd $(WORKDIR)/52-13-1511;sed -i "s/^/52-13-1511_pre_MEAN_RADIUS_1,/" 52-13-1511_pre_MEAN_RADIUS_1.csv job_52-13-1511_wCSV_pre_MEAN_RADIUS_3: cd $(WORKDIR)/52-13-1511;c3d 52-13-1511_pre_MEAN_RADIUS_3.nii.gz 52-13-1511_labels.nii.gz -lstat > 52-13-1511_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/52-13-1511;sed -i "1,2d" 52-13-1511_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/52-13-1511;sed "s/\s\+/,/g" 52-13-1511_pre_MEAN_RADIUS_3.txt > 52-13-1511_pre_MEAN_RADIUS_3.csv cd $(WORKDIR)/52-13-1511;sed -i "s/^/52-13-1511_pre_MEAN_RADIUS_3,/" 52-13-1511_pre_MEAN_RADIUS_3.csv job_52-13-1511_wCSV_pre_NORMALIZED: cd $(WORKDIR)/52-13-1511;c3d 52-13-1511_pre_NORMALIZED.nii.gz 52-13-1511_labels.nii.gz -lstat > 52-13-1511_pre_NORMALIZED.txt cd $(WORKDIR)/52-13-1511;sed -i "1,2d" 52-13-1511_pre_NORMALIZED.txt cd $(WORKDIR)/52-13-1511;sed "s/\s\+/,/g" 52-13-1511_pre_NORMALIZED.txt > 52-13-1511_pre_NORMALIZED.csv cd $(WORKDIR)/52-13-1511;sed -i "s/^/52-13-1511_pre_NORMALIZED,/" 52-13-1511_pre_NORMALIZED.csv job_52-13-1511_wCSV_pre_SIGMA_RADIUS_1: cd $(WORKDIR)/52-13-1511;c3d 52-13-1511_pre_SIGMA_RADIUS_1.nii.gz 52-13-1511_labels.nii.gz -lstat > 52-13-1511_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/52-13-1511;sed -i "1,2d" 52-13-1511_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/52-13-1511;sed "s/\s\+/,/g" 52-13-1511_pre_SIGMA_RADIUS_1.txt > 52-13-1511_pre_SIGMA_RADIUS_1.csv cd $(WORKDIR)/52-13-1511;sed -i "s/^/52-13-1511_pre_SIGMA_RADIUS_1,/" 52-13-1511_pre_SIGMA_RADIUS_1.csv job_52-13-1511_wCSV_pre_SIGMA_RADIUS_3: cd $(WORKDIR)/52-13-1511;c3d 52-13-1511_pre_SIGMA_RADIUS_3.nii.gz 52-13-1511_labels.nii.gz -lstat > 52-13-1511_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/52-13-1511;sed -i "1,2d" 52-13-1511_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/52-13-1511;sed "s/\s\+/,/g" 52-13-1511_pre_SIGMA_RADIUS_3.txt > 52-13-1511_pre_SIGMA_RADIUS_3.csv cd $(WORKDIR)/52-13-1511;sed -i "s/^/52-13-1511_pre_SIGMA_RADIUS_3,/" 52-13-1511_pre_SIGMA_RADIUS_3.csv job_52-13-1511_wCSV_pre_SKEWNESS_RADIUS_1: cd $(WORKDIR)/52-13-1511;c3d 52-13-1511_pre_SKEWNESS_RADIUS_1.nii.gz 52-13-1511_labels.nii.gz -lstat > 52-13-1511_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/52-13-1511;sed -i "1,2d" 52-13-1511_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/52-13-1511;sed "s/\s\+/,/g" 52-13-1511_pre_SKEWNESS_RADIUS_1.txt > 52-13-1511_pre_SKEWNESS_RADIUS_1.csv cd $(WORKDIR)/52-13-1511;sed -i "s/^/52-13-1511_pre_SKEWNESS_RADIUS_1,/" 52-13-1511_pre_SKEWNESS_RADIUS_1.csv job_52-13-1511_wCSV_pre_SKEWNESS_RADIUS_3: cd $(WORKDIR)/52-13-1511;c3d 52-13-1511_pre_SKEWNESS_RADIUS_3.nii.gz 52-13-1511_labels.nii.gz -lstat > 52-13-1511_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/52-13-1511;sed -i "1,2d" 52-13-1511_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/52-13-1511;sed "s/\s\+/,/g" 52-13-1511_pre_SKEWNESS_RADIUS_3.txt > 52-13-1511_pre_SKEWNESS_RADIUS_3.csv cd $(WORKDIR)/52-13-1511;sed -i "s/^/52-13-1511_pre_SKEWNESS_RADIUS_3,/" 52-13-1511_pre_SKEWNESS_RADIUS_3.csv job_52-13-1511_wCSV_pre__DIFFERENCE: cd $(WORKDIR)/52-13-1511;c3d 52-13-1511_pre__DIFFERENCE.nii.gz 52-13-1511_labels.nii.gz -lstat > 52-13-1511_pre__DIFFERENCE.txt cd $(WORKDIR)/52-13-1511;sed -i "1,2d" 52-13-1511_pre__DIFFERENCE.txt cd $(WORKDIR)/52-13-1511;sed "s/\s\+/,/g" 52-13-1511_pre__DIFFERENCE.txt > 52-13-1511_pre__DIFFERENCE.csv cd $(WORKDIR)/52-13-1511;sed -i "s/^/52-13-1511_pre__DIFFERENCE,/" 52-13-1511_pre__DIFFERENCE.csv job_53-13-2057_crFI: cd $(WORKDIR)/53-13-2057;c3d 53-13-2057_grey.nii.gz 53-13-2057_labels.nii.gz -copy-transform -o 53-13-2057_labels.nii.gz cd $(WORKDIR)/53-13-2057;c3d 53-13-2057_grey.nii.gz -orient RAI -o 53-13-2057_grey.nii.gz cd $(WORKDIR)/53-13-2057;c3d 53-13-2057_labels.nii.gz -orient RAI -o 53-13-2057_labels.nii.gz cd $(WORKDIR)/53-13-2057;c3d 53-13-2057_labels.nii.gz -binarize -o 53-13-2057_mask.nii.gz cd $(WORKDIR)/53-13-2057;../createFeatureImagesOvary.sh -d 3 -x 53-13-2057_mask.nii.gz -l3 -n pre -a 53-13-2057_grey.nii.gz -f 0x2 -o ./53-13-2057_ -r 1 -r 3 -s 2 -b 4 job_53-13-2057_wCSV_NORMALIZED_DISTANCE: cd $(WORKDIR)/53-13-2057;c3d 53-13-2057_NORMALIZED_DISTANCE.nii.gz 53-13-2057_labels.nii.gz -lstat > 53-13-2057_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/53-13-2057;sed -i "1,2d" 53-13-2057_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/53-13-2057;sed "s/\s\+/,/g" 53-13-2057_NORMALIZED_DISTANCE.txt > 53-13-2057_NORMALIZED_DISTANCE.csv cd $(WORKDIR)/53-13-2057;sed -i "s/^/53-13-2057_NORMALIZED_DISTANCE,/" 53-13-2057_NORMALIZED_DISTANCE.csv job_53-13-2057_wCSV_pre_ATROPOS_GMM: cd $(WORKDIR)/53-13-2057;c3d 53-13-2057_pre_ATROPOS_GMM.nii.gz 53-13-2057_labels.nii.gz -lstat > 53-13-2057_pre_ATROPOS_GMM.txt cd $(WORKDIR)/53-13-2057;sed -i "1,2d" 53-13-2057_pre_ATROPOS_GMM.txt cd $(WORKDIR)/53-13-2057;sed "s/\s\+/,/g" 53-13-2057_pre_ATROPOS_GMM.txt > 53-13-2057_pre_ATROPOS_GMM.csv cd $(WORKDIR)/53-13-2057;sed -i "s/^/53-13-2057_pre_ATROPOS_GMM,/" 53-13-2057_pre_ATROPOS_GMM.csv job_53-13-2057_wCSV_pre_ATROPOS_GMM_ECCENTRICITY: cd $(WORKDIR)/53-13-2057;c3d 53-13-2057_pre_ATROPOS_GMM_ECCENTRICITY.nii.gz 53-13-2057_labels.nii.gz -lstat > 53-13-2057_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/53-13-2057;sed -i "1,2d" 53-13-2057_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/53-13-2057;sed "s/\s\+/,/g" 53-13-2057_pre_ATROPOS_GMM_ECCENTRICITY.txt > 53-13-2057_pre_ATROPOS_GMM_ECCENTRICITY.csv cd $(WORKDIR)/53-13-2057;sed -i "s/^/53-13-2057_pre_ATROPOS_GMM_ECCENTRICITY,/" 53-13-2057_pre_ATROPOS_GMM_ECCENTRICITY.csv job_53-13-2057_wCSV_pre_ATROPOS_GMM_ELONGATION: cd $(WORKDIR)/53-13-2057;c3d 53-13-2057_pre_ATROPOS_GMM_ELONGATION.nii.gz 53-13-2057_labels.nii.gz -lstat > 53-13-2057_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/53-13-2057;sed -i "1,2d" 53-13-2057_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/53-13-2057;sed "s/\s\+/,/g" 53-13-2057_pre_ATROPOS_GMM_ELONGATION.txt > 53-13-2057_pre_ATROPOS_GMM_ELONGATION.csv cd $(WORKDIR)/53-13-2057;sed -i "s/^/53-13-2057_pre_ATROPOS_GMM_ELONGATION,/" 53-13-2057_pre_ATROPOS_GMM_ELONGATION.csv job_53-13-2057_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE: cd $(WORKDIR)/53-13-2057;c3d 53-13-2057_pre_ATROPOS_GMM_LABEL3_DISTANCE.nii.gz 53-13-2057_labels.nii.gz -lstat > 53-13-2057_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/53-13-2057;sed -i "1,2d" 53-13-2057_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/53-13-2057;sed "s/\s\+/,/g" 53-13-2057_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt > 53-13-2057_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv cd $(WORKDIR)/53-13-2057;sed -i "s/^/53-13-2057_pre_ATROPOS_GMM_LABEL3_DISTANCE,/" 53-13-2057_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv job_53-13-2057_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME: cd $(WORKDIR)/53-13-2057;c3d 53-13-2057_pre_ATROPOS_GMM_PHYSICAL_VOLUME.nii.gz 53-13-2057_labels.nii.gz -lstat > 53-13-2057_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/53-13-2057;sed -i "1,2d" 53-13-2057_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/53-13-2057;sed "s/\s\+/,/g" 53-13-2057_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt > 53-13-2057_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv cd $(WORKDIR)/53-13-2057;sed -i "s/^/53-13-2057_pre_ATROPOS_GMM_PHYSICAL_VOLUME,/" 53-13-2057_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv job_53-13-2057_wCSV_pre_ATROPOS_GMM_POSTERIORS1: cd $(WORKDIR)/53-13-2057;c3d 53-13-2057_pre_ATROPOS_GMM_POSTERIORS1.nii.gz 53-13-2057_labels.nii.gz -lstat > 53-13-2057_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/53-13-2057;sed -i "1,2d" 53-13-2057_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/53-13-2057;sed "s/\s\+/,/g" 53-13-2057_pre_ATROPOS_GMM_POSTERIORS1.txt > 53-13-2057_pre_ATROPOS_GMM_POSTERIORS1.csv cd $(WORKDIR)/53-13-2057;sed -i "s/^/53-13-2057_pre_ATROPOS_GMM_POSTERIORS1,/" 53-13-2057_pre_ATROPOS_GMM_POSTERIORS1.csv job_53-13-2057_wCSV_pre_ATROPOS_GMM_POSTERIORS2: cd $(WORKDIR)/53-13-2057;c3d 53-13-2057_pre_ATROPOS_GMM_POSTERIORS2.nii.gz 53-13-2057_labels.nii.gz -lstat > 53-13-2057_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/53-13-2057;sed -i "1,2d" 53-13-2057_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/53-13-2057;sed "s/\s\+/,/g" 53-13-2057_pre_ATROPOS_GMM_POSTERIORS2.txt > 53-13-2057_pre_ATROPOS_GMM_POSTERIORS2.csv cd $(WORKDIR)/53-13-2057;sed -i "s/^/53-13-2057_pre_ATROPOS_GMM_POSTERIORS2,/" 53-13-2057_pre_ATROPOS_GMM_POSTERIORS2.csv job_53-13-2057_wCSV_pre_ATROPOS_GMM_POSTERIORS3: cd $(WORKDIR)/53-13-2057;c3d 53-13-2057_pre_ATROPOS_GMM_POSTERIORS3.nii.gz 53-13-2057_labels.nii.gz -lstat > 53-13-2057_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/53-13-2057;sed -i "1,2d" 53-13-2057_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/53-13-2057;sed "s/\s\+/,/g" 53-13-2057_pre_ATROPOS_GMM_POSTERIORS3.txt > 53-13-2057_pre_ATROPOS_GMM_POSTERIORS3.csv cd $(WORKDIR)/53-13-2057;sed -i "s/^/53-13-2057_pre_ATROPOS_GMM_POSTERIORS3,/" 53-13-2057_pre_ATROPOS_GMM_POSTERIORS3.csv job_53-13-2057_wCSV_pre_ATROPOS_GMM_POSTERIORS4: cd $(WORKDIR)/53-13-2057;c3d 53-13-2057_pre_ATROPOS_GMM_POSTERIORS4.nii.gz 53-13-2057_labels.nii.gz -lstat > 53-13-2057_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/53-13-2057;sed -i "1,2d" 53-13-2057_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/53-13-2057;sed "s/\s\+/,/g" 53-13-2057_pre_ATROPOS_GMM_POSTERIORS4.txt > 53-13-2057_pre_ATROPOS_GMM_POSTERIORS4.csv cd $(WORKDIR)/53-13-2057;sed -i "s/^/53-13-2057_pre_ATROPOS_GMM_POSTERIORS4,/" 53-13-2057_pre_ATROPOS_GMM_POSTERIORS4.csv job_53-13-2057_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO: cd $(WORKDIR)/53-13-2057;c3d 53-13-2057_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.nii.gz 53-13-2057_labels.nii.gz -lstat > 53-13-2057_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/53-13-2057;sed -i "1,2d" 53-13-2057_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/53-13-2057;sed "s/\s\+/,/g" 53-13-2057_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt > 53-13-2057_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv cd $(WORKDIR)/53-13-2057;sed -i "s/^/53-13-2057_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO,/" 53-13-2057_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv job_53-13-2057_wCSV_pre_ENTROPY_RADIUS_1: cd $(WORKDIR)/53-13-2057;c3d 53-13-2057_pre_ENTROPY_RADIUS_1.nii.gz 53-13-2057_labels.nii.gz -lstat > 53-13-2057_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/53-13-2057;sed -i "1,2d" 53-13-2057_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/53-13-2057;sed "s/\s\+/,/g" 53-13-2057_pre_ENTROPY_RADIUS_1.txt > 53-13-2057_pre_ENTROPY_RADIUS_1.csv cd $(WORKDIR)/53-13-2057;sed -i "s/^/53-13-2057_pre_ENTROPY_RADIUS_1,/" 53-13-2057_pre_ENTROPY_RADIUS_1.csv job_53-13-2057_wCSV_pre_ENTROPY_RADIUS_3: cd $(WORKDIR)/53-13-2057;c3d 53-13-2057_pre_ENTROPY_RADIUS_3.nii.gz 53-13-2057_labels.nii.gz -lstat > 53-13-2057_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/53-13-2057;sed -i "1,2d" 53-13-2057_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/53-13-2057;sed "s/\s\+/,/g" 53-13-2057_pre_ENTROPY_RADIUS_3.txt > 53-13-2057_pre_ENTROPY_RADIUS_3.csv cd $(WORKDIR)/53-13-2057;sed -i "s/^/53-13-2057_pre_ENTROPY_RADIUS_3,/" 53-13-2057_pre_ENTROPY_RADIUS_3.csv job_53-13-2057_wCSV_pre_MEAN_RADIUS_1: cd $(WORKDIR)/53-13-2057;c3d 53-13-2057_pre_MEAN_RADIUS_1.nii.gz 53-13-2057_labels.nii.gz -lstat > 53-13-2057_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/53-13-2057;sed -i "1,2d" 53-13-2057_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/53-13-2057;sed "s/\s\+/,/g" 53-13-2057_pre_MEAN_RADIUS_1.txt > 53-13-2057_pre_MEAN_RADIUS_1.csv cd $(WORKDIR)/53-13-2057;sed -i "s/^/53-13-2057_pre_MEAN_RADIUS_1,/" 53-13-2057_pre_MEAN_RADIUS_1.csv job_53-13-2057_wCSV_pre_MEAN_RADIUS_3: cd $(WORKDIR)/53-13-2057;c3d 53-13-2057_pre_MEAN_RADIUS_3.nii.gz 53-13-2057_labels.nii.gz -lstat > 53-13-2057_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/53-13-2057;sed -i "1,2d" 53-13-2057_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/53-13-2057;sed "s/\s\+/,/g" 53-13-2057_pre_MEAN_RADIUS_3.txt > 53-13-2057_pre_MEAN_RADIUS_3.csv cd $(WORKDIR)/53-13-2057;sed -i "s/^/53-13-2057_pre_MEAN_RADIUS_3,/" 53-13-2057_pre_MEAN_RADIUS_3.csv job_53-13-2057_wCSV_pre_NORMALIZED: cd $(WORKDIR)/53-13-2057;c3d 53-13-2057_pre_NORMALIZED.nii.gz 53-13-2057_labels.nii.gz -lstat > 53-13-2057_pre_NORMALIZED.txt cd $(WORKDIR)/53-13-2057;sed -i "1,2d" 53-13-2057_pre_NORMALIZED.txt cd $(WORKDIR)/53-13-2057;sed "s/\s\+/,/g" 53-13-2057_pre_NORMALIZED.txt > 53-13-2057_pre_NORMALIZED.csv cd $(WORKDIR)/53-13-2057;sed -i "s/^/53-13-2057_pre_NORMALIZED,/" 53-13-2057_pre_NORMALIZED.csv job_53-13-2057_wCSV_pre_SIGMA_RADIUS_1: cd $(WORKDIR)/53-13-2057;c3d 53-13-2057_pre_SIGMA_RADIUS_1.nii.gz 53-13-2057_labels.nii.gz -lstat > 53-13-2057_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/53-13-2057;sed -i "1,2d" 53-13-2057_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/53-13-2057;sed "s/\s\+/,/g" 53-13-2057_pre_SIGMA_RADIUS_1.txt > 53-13-2057_pre_SIGMA_RADIUS_1.csv cd $(WORKDIR)/53-13-2057;sed -i "s/^/53-13-2057_pre_SIGMA_RADIUS_1,/" 53-13-2057_pre_SIGMA_RADIUS_1.csv job_53-13-2057_wCSV_pre_SIGMA_RADIUS_3: cd $(WORKDIR)/53-13-2057;c3d 53-13-2057_pre_SIGMA_RADIUS_3.nii.gz 53-13-2057_labels.nii.gz -lstat > 53-13-2057_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/53-13-2057;sed -i "1,2d" 53-13-2057_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/53-13-2057;sed "s/\s\+/,/g" 53-13-2057_pre_SIGMA_RADIUS_3.txt > 53-13-2057_pre_SIGMA_RADIUS_3.csv cd $(WORKDIR)/53-13-2057;sed -i "s/^/53-13-2057_pre_SIGMA_RADIUS_3,/" 53-13-2057_pre_SIGMA_RADIUS_3.csv job_53-13-2057_wCSV_pre_SKEWNESS_RADIUS_1: cd $(WORKDIR)/53-13-2057;c3d 53-13-2057_pre_SKEWNESS_RADIUS_1.nii.gz 53-13-2057_labels.nii.gz -lstat > 53-13-2057_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/53-13-2057;sed -i "1,2d" 53-13-2057_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/53-13-2057;sed "s/\s\+/,/g" 53-13-2057_pre_SKEWNESS_RADIUS_1.txt > 53-13-2057_pre_SKEWNESS_RADIUS_1.csv cd $(WORKDIR)/53-13-2057;sed -i "s/^/53-13-2057_pre_SKEWNESS_RADIUS_1,/" 53-13-2057_pre_SKEWNESS_RADIUS_1.csv job_53-13-2057_wCSV_pre_SKEWNESS_RADIUS_3: cd $(WORKDIR)/53-13-2057;c3d 53-13-2057_pre_SKEWNESS_RADIUS_3.nii.gz 53-13-2057_labels.nii.gz -lstat > 53-13-2057_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/53-13-2057;sed -i "1,2d" 53-13-2057_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/53-13-2057;sed "s/\s\+/,/g" 53-13-2057_pre_SKEWNESS_RADIUS_3.txt > 53-13-2057_pre_SKEWNESS_RADIUS_3.csv cd $(WORKDIR)/53-13-2057;sed -i "s/^/53-13-2057_pre_SKEWNESS_RADIUS_3,/" 53-13-2057_pre_SKEWNESS_RADIUS_3.csv job_53-13-2057_wCSV_pre__DIFFERENCE: cd $(WORKDIR)/53-13-2057;c3d 53-13-2057_pre__DIFFERENCE.nii.gz 53-13-2057_labels.nii.gz -lstat > 53-13-2057_pre__DIFFERENCE.txt cd $(WORKDIR)/53-13-2057;sed -i "1,2d" 53-13-2057_pre__DIFFERENCE.txt cd $(WORKDIR)/53-13-2057;sed "s/\s\+/,/g" 53-13-2057_pre__DIFFERENCE.txt > 53-13-2057_pre__DIFFERENCE.csv cd $(WORKDIR)/53-13-2057;sed -i "s/^/53-13-2057_pre__DIFFERENCE,/" 53-13-2057_pre__DIFFERENCE.csv job_54-13-2059_crFI: cd $(WORKDIR)/54-13-2059;c3d 54-13-2059_grey.nii.gz 54-13-2059_labels.nii.gz -copy-transform -o 54-13-2059_labels.nii.gz cd $(WORKDIR)/54-13-2059;c3d 54-13-2059_grey.nii.gz -orient RAI -o 54-13-2059_grey.nii.gz cd $(WORKDIR)/54-13-2059;c3d 54-13-2059_labels.nii.gz -orient RAI -o 54-13-2059_labels.nii.gz cd $(WORKDIR)/54-13-2059;c3d 54-13-2059_labels.nii.gz -binarize -o 54-13-2059_mask.nii.gz cd $(WORKDIR)/54-13-2059;../createFeatureImagesOvary.sh -d 3 -x 54-13-2059_mask.nii.gz -l3 -n pre -a 54-13-2059_grey.nii.gz -f 0x2 -o ./54-13-2059_ -r 1 -r 3 -s 2 -b 4 job_54-13-2059_wCSV_NORMALIZED_DISTANCE: cd $(WORKDIR)/54-13-2059;c3d 54-13-2059_NORMALIZED_DISTANCE.nii.gz 54-13-2059_labels.nii.gz -lstat > 54-13-2059_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/54-13-2059;sed -i "1,2d" 54-13-2059_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/54-13-2059;sed "s/\s\+/,/g" 54-13-2059_NORMALIZED_DISTANCE.txt > 54-13-2059_NORMALIZED_DISTANCE.csv cd $(WORKDIR)/54-13-2059;sed -i "s/^/54-13-2059_NORMALIZED_DISTANCE,/" 54-13-2059_NORMALIZED_DISTANCE.csv job_54-13-2059_wCSV_pre_ATROPOS_GMM: cd $(WORKDIR)/54-13-2059;c3d 54-13-2059_pre_ATROPOS_GMM.nii.gz 54-13-2059_labels.nii.gz -lstat > 54-13-2059_pre_ATROPOS_GMM.txt cd $(WORKDIR)/54-13-2059;sed -i "1,2d" 54-13-2059_pre_ATROPOS_GMM.txt cd $(WORKDIR)/54-13-2059;sed "s/\s\+/,/g" 54-13-2059_pre_ATROPOS_GMM.txt > 54-13-2059_pre_ATROPOS_GMM.csv cd $(WORKDIR)/54-13-2059;sed -i "s/^/54-13-2059_pre_ATROPOS_GMM,/" 54-13-2059_pre_ATROPOS_GMM.csv job_54-13-2059_wCSV_pre_ATROPOS_GMM_ECCENTRICITY: cd $(WORKDIR)/54-13-2059;c3d 54-13-2059_pre_ATROPOS_GMM_ECCENTRICITY.nii.gz 54-13-2059_labels.nii.gz -lstat > 54-13-2059_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/54-13-2059;sed -i "1,2d" 54-13-2059_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/54-13-2059;sed "s/\s\+/,/g" 54-13-2059_pre_ATROPOS_GMM_ECCENTRICITY.txt > 54-13-2059_pre_ATROPOS_GMM_ECCENTRICITY.csv cd $(WORKDIR)/54-13-2059;sed -i "s/^/54-13-2059_pre_ATROPOS_GMM_ECCENTRICITY,/" 54-13-2059_pre_ATROPOS_GMM_ECCENTRICITY.csv job_54-13-2059_wCSV_pre_ATROPOS_GMM_ELONGATION: cd $(WORKDIR)/54-13-2059;c3d 54-13-2059_pre_ATROPOS_GMM_ELONGATION.nii.gz 54-13-2059_labels.nii.gz -lstat > 54-13-2059_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/54-13-2059;sed -i "1,2d" 54-13-2059_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/54-13-2059;sed "s/\s\+/,/g" 54-13-2059_pre_ATROPOS_GMM_ELONGATION.txt > 54-13-2059_pre_ATROPOS_GMM_ELONGATION.csv cd $(WORKDIR)/54-13-2059;sed -i "s/^/54-13-2059_pre_ATROPOS_GMM_ELONGATION,/" 54-13-2059_pre_ATROPOS_GMM_ELONGATION.csv job_54-13-2059_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE: cd $(WORKDIR)/54-13-2059;c3d 54-13-2059_pre_ATROPOS_GMM_LABEL3_DISTANCE.nii.gz 54-13-2059_labels.nii.gz -lstat > 54-13-2059_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/54-13-2059;sed -i "1,2d" 54-13-2059_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/54-13-2059;sed "s/\s\+/,/g" 54-13-2059_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt > 54-13-2059_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv cd $(WORKDIR)/54-13-2059;sed -i "s/^/54-13-2059_pre_ATROPOS_GMM_LABEL3_DISTANCE,/" 54-13-2059_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv job_54-13-2059_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME: cd $(WORKDIR)/54-13-2059;c3d 54-13-2059_pre_ATROPOS_GMM_PHYSICAL_VOLUME.nii.gz 54-13-2059_labels.nii.gz -lstat > 54-13-2059_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/54-13-2059;sed -i "1,2d" 54-13-2059_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/54-13-2059;sed "s/\s\+/,/g" 54-13-2059_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt > 54-13-2059_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv cd $(WORKDIR)/54-13-2059;sed -i "s/^/54-13-2059_pre_ATROPOS_GMM_PHYSICAL_VOLUME,/" 54-13-2059_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv job_54-13-2059_wCSV_pre_ATROPOS_GMM_POSTERIORS1: cd $(WORKDIR)/54-13-2059;c3d 54-13-2059_pre_ATROPOS_GMM_POSTERIORS1.nii.gz 54-13-2059_labels.nii.gz -lstat > 54-13-2059_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/54-13-2059;sed -i "1,2d" 54-13-2059_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/54-13-2059;sed "s/\s\+/,/g" 54-13-2059_pre_ATROPOS_GMM_POSTERIORS1.txt > 54-13-2059_pre_ATROPOS_GMM_POSTERIORS1.csv cd $(WORKDIR)/54-13-2059;sed -i "s/^/54-13-2059_pre_ATROPOS_GMM_POSTERIORS1,/" 54-13-2059_pre_ATROPOS_GMM_POSTERIORS1.csv job_54-13-2059_wCSV_pre_ATROPOS_GMM_POSTERIORS2: cd $(WORKDIR)/54-13-2059;c3d 54-13-2059_pre_ATROPOS_GMM_POSTERIORS2.nii.gz 54-13-2059_labels.nii.gz -lstat > 54-13-2059_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/54-13-2059;sed -i "1,2d" 54-13-2059_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/54-13-2059;sed "s/\s\+/,/g" 54-13-2059_pre_ATROPOS_GMM_POSTERIORS2.txt > 54-13-2059_pre_ATROPOS_GMM_POSTERIORS2.csv cd $(WORKDIR)/54-13-2059;sed -i "s/^/54-13-2059_pre_ATROPOS_GMM_POSTERIORS2,/" 54-13-2059_pre_ATROPOS_GMM_POSTERIORS2.csv job_54-13-2059_wCSV_pre_ATROPOS_GMM_POSTERIORS3: cd $(WORKDIR)/54-13-2059;c3d 54-13-2059_pre_ATROPOS_GMM_POSTERIORS3.nii.gz 54-13-2059_labels.nii.gz -lstat > 54-13-2059_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/54-13-2059;sed -i "1,2d" 54-13-2059_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/54-13-2059;sed "s/\s\+/,/g" 54-13-2059_pre_ATROPOS_GMM_POSTERIORS3.txt > 54-13-2059_pre_ATROPOS_GMM_POSTERIORS3.csv cd $(WORKDIR)/54-13-2059;sed -i "s/^/54-13-2059_pre_ATROPOS_GMM_POSTERIORS3,/" 54-13-2059_pre_ATROPOS_GMM_POSTERIORS3.csv job_54-13-2059_wCSV_pre_ATROPOS_GMM_POSTERIORS4: cd $(WORKDIR)/54-13-2059;c3d 54-13-2059_pre_ATROPOS_GMM_POSTERIORS4.nii.gz 54-13-2059_labels.nii.gz -lstat > 54-13-2059_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/54-13-2059;sed -i "1,2d" 54-13-2059_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/54-13-2059;sed "s/\s\+/,/g" 54-13-2059_pre_ATROPOS_GMM_POSTERIORS4.txt > 54-13-2059_pre_ATROPOS_GMM_POSTERIORS4.csv cd $(WORKDIR)/54-13-2059;sed -i "s/^/54-13-2059_pre_ATROPOS_GMM_POSTERIORS4,/" 54-13-2059_pre_ATROPOS_GMM_POSTERIORS4.csv job_54-13-2059_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO: cd $(WORKDIR)/54-13-2059;c3d 54-13-2059_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.nii.gz 54-13-2059_labels.nii.gz -lstat > 54-13-2059_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/54-13-2059;sed -i "1,2d" 54-13-2059_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/54-13-2059;sed "s/\s\+/,/g" 54-13-2059_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt > 54-13-2059_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv cd $(WORKDIR)/54-13-2059;sed -i "s/^/54-13-2059_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO,/" 54-13-2059_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv job_54-13-2059_wCSV_pre_ENTROPY_RADIUS_1: cd $(WORKDIR)/54-13-2059;c3d 54-13-2059_pre_ENTROPY_RADIUS_1.nii.gz 54-13-2059_labels.nii.gz -lstat > 54-13-2059_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/54-13-2059;sed -i "1,2d" 54-13-2059_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/54-13-2059;sed "s/\s\+/,/g" 54-13-2059_pre_ENTROPY_RADIUS_1.txt > 54-13-2059_pre_ENTROPY_RADIUS_1.csv cd $(WORKDIR)/54-13-2059;sed -i "s/^/54-13-2059_pre_ENTROPY_RADIUS_1,/" 54-13-2059_pre_ENTROPY_RADIUS_1.csv job_54-13-2059_wCSV_pre_ENTROPY_RADIUS_3: cd $(WORKDIR)/54-13-2059;c3d 54-13-2059_pre_ENTROPY_RADIUS_3.nii.gz 54-13-2059_labels.nii.gz -lstat > 54-13-2059_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/54-13-2059;sed -i "1,2d" 54-13-2059_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/54-13-2059;sed "s/\s\+/,/g" 54-13-2059_pre_ENTROPY_RADIUS_3.txt > 54-13-2059_pre_ENTROPY_RADIUS_3.csv cd $(WORKDIR)/54-13-2059;sed -i "s/^/54-13-2059_pre_ENTROPY_RADIUS_3,/" 54-13-2059_pre_ENTROPY_RADIUS_3.csv job_54-13-2059_wCSV_pre_MEAN_RADIUS_1: cd $(WORKDIR)/54-13-2059;c3d 54-13-2059_pre_MEAN_RADIUS_1.nii.gz 54-13-2059_labels.nii.gz -lstat > 54-13-2059_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/54-13-2059;sed -i "1,2d" 54-13-2059_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/54-13-2059;sed "s/\s\+/,/g" 54-13-2059_pre_MEAN_RADIUS_1.txt > 54-13-2059_pre_MEAN_RADIUS_1.csv cd $(WORKDIR)/54-13-2059;sed -i "s/^/54-13-2059_pre_MEAN_RADIUS_1,/" 54-13-2059_pre_MEAN_RADIUS_1.csv job_54-13-2059_wCSV_pre_MEAN_RADIUS_3: cd $(WORKDIR)/54-13-2059;c3d 54-13-2059_pre_MEAN_RADIUS_3.nii.gz 54-13-2059_labels.nii.gz -lstat > 54-13-2059_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/54-13-2059;sed -i "1,2d" 54-13-2059_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/54-13-2059;sed "s/\s\+/,/g" 54-13-2059_pre_MEAN_RADIUS_3.txt > 54-13-2059_pre_MEAN_RADIUS_3.csv cd $(WORKDIR)/54-13-2059;sed -i "s/^/54-13-2059_pre_MEAN_RADIUS_3,/" 54-13-2059_pre_MEAN_RADIUS_3.csv job_54-13-2059_wCSV_pre_NORMALIZED: cd $(WORKDIR)/54-13-2059;c3d 54-13-2059_pre_NORMALIZED.nii.gz 54-13-2059_labels.nii.gz -lstat > 54-13-2059_pre_NORMALIZED.txt cd $(WORKDIR)/54-13-2059;sed -i "1,2d" 54-13-2059_pre_NORMALIZED.txt cd $(WORKDIR)/54-13-2059;sed "s/\s\+/,/g" 54-13-2059_pre_NORMALIZED.txt > 54-13-2059_pre_NORMALIZED.csv cd $(WORKDIR)/54-13-2059;sed -i "s/^/54-13-2059_pre_NORMALIZED,/" 54-13-2059_pre_NORMALIZED.csv job_54-13-2059_wCSV_pre_SIGMA_RADIUS_1: cd $(WORKDIR)/54-13-2059;c3d 54-13-2059_pre_SIGMA_RADIUS_1.nii.gz 54-13-2059_labels.nii.gz -lstat > 54-13-2059_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/54-13-2059;sed -i "1,2d" 54-13-2059_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/54-13-2059;sed "s/\s\+/,/g" 54-13-2059_pre_SIGMA_RADIUS_1.txt > 54-13-2059_pre_SIGMA_RADIUS_1.csv cd $(WORKDIR)/54-13-2059;sed -i "s/^/54-13-2059_pre_SIGMA_RADIUS_1,/" 54-13-2059_pre_SIGMA_RADIUS_1.csv job_54-13-2059_wCSV_pre_SIGMA_RADIUS_3: cd $(WORKDIR)/54-13-2059;c3d 54-13-2059_pre_SIGMA_RADIUS_3.nii.gz 54-13-2059_labels.nii.gz -lstat > 54-13-2059_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/54-13-2059;sed -i "1,2d" 54-13-2059_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/54-13-2059;sed "s/\s\+/,/g" 54-13-2059_pre_SIGMA_RADIUS_3.txt > 54-13-2059_pre_SIGMA_RADIUS_3.csv cd $(WORKDIR)/54-13-2059;sed -i "s/^/54-13-2059_pre_SIGMA_RADIUS_3,/" 54-13-2059_pre_SIGMA_RADIUS_3.csv job_54-13-2059_wCSV_pre_SKEWNESS_RADIUS_1: cd $(WORKDIR)/54-13-2059;c3d 54-13-2059_pre_SKEWNESS_RADIUS_1.nii.gz 54-13-2059_labels.nii.gz -lstat > 54-13-2059_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/54-13-2059;sed -i "1,2d" 54-13-2059_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/54-13-2059;sed "s/\s\+/,/g" 54-13-2059_pre_SKEWNESS_RADIUS_1.txt > 54-13-2059_pre_SKEWNESS_RADIUS_1.csv cd $(WORKDIR)/54-13-2059;sed -i "s/^/54-13-2059_pre_SKEWNESS_RADIUS_1,/" 54-13-2059_pre_SKEWNESS_RADIUS_1.csv job_54-13-2059_wCSV_pre_SKEWNESS_RADIUS_3: cd $(WORKDIR)/54-13-2059;c3d 54-13-2059_pre_SKEWNESS_RADIUS_3.nii.gz 54-13-2059_labels.nii.gz -lstat > 54-13-2059_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/54-13-2059;sed -i "1,2d" 54-13-2059_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/54-13-2059;sed "s/\s\+/,/g" 54-13-2059_pre_SKEWNESS_RADIUS_3.txt > 54-13-2059_pre_SKEWNESS_RADIUS_3.csv cd $(WORKDIR)/54-13-2059;sed -i "s/^/54-13-2059_pre_SKEWNESS_RADIUS_3,/" 54-13-2059_pre_SKEWNESS_RADIUS_3.csv job_54-13-2059_wCSV_pre__DIFFERENCE: cd $(WORKDIR)/54-13-2059;c3d 54-13-2059_pre__DIFFERENCE.nii.gz 54-13-2059_labels.nii.gz -lstat > 54-13-2059_pre__DIFFERENCE.txt cd $(WORKDIR)/54-13-2059;sed -i "1,2d" 54-13-2059_pre__DIFFERENCE.txt cd $(WORKDIR)/54-13-2059;sed "s/\s\+/,/g" 54-13-2059_pre__DIFFERENCE.txt > 54-13-2059_pre__DIFFERENCE.csv cd $(WORKDIR)/54-13-2059;sed -i "s/^/54-13-2059_pre__DIFFERENCE,/" 54-13-2059_pre__DIFFERENCE.csv job_55-13-2060_crFI: cd $(WORKDIR)/55-13-2060;c3d 55-13-2060_grey.nii.gz 55-13-2060_labels.nii.gz -copy-transform -o 55-13-2060_labels.nii.gz cd $(WORKDIR)/55-13-2060;c3d 55-13-2060_grey.nii.gz -orient RAI -o 55-13-2060_grey.nii.gz cd $(WORKDIR)/55-13-2060;c3d 55-13-2060_labels.nii.gz -orient RAI -o 55-13-2060_labels.nii.gz cd $(WORKDIR)/55-13-2060;c3d 55-13-2060_labels.nii.gz -binarize -o 55-13-2060_mask.nii.gz cd $(WORKDIR)/55-13-2060;../createFeatureImagesOvary.sh -d 3 -x 55-13-2060_mask.nii.gz -l3 -n pre -a 55-13-2060_grey.nii.gz -f 0x2 -o ./55-13-2060_ -r 1 -r 3 -s 2 -b 4 job_55-13-2060_wCSV_NORMALIZED_DISTANCE: cd $(WORKDIR)/55-13-2060;c3d 55-13-2060_NORMALIZED_DISTANCE.nii.gz 55-13-2060_labels.nii.gz -lstat > 55-13-2060_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/55-13-2060;sed -i "1,2d" 55-13-2060_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/55-13-2060;sed "s/\s\+/,/g" 55-13-2060_NORMALIZED_DISTANCE.txt > 55-13-2060_NORMALIZED_DISTANCE.csv cd $(WORKDIR)/55-13-2060;sed -i "s/^/55-13-2060_NORMALIZED_DISTANCE,/" 55-13-2060_NORMALIZED_DISTANCE.csv job_55-13-2060_wCSV_pre_ATROPOS_GMM: cd $(WORKDIR)/55-13-2060;c3d 55-13-2060_pre_ATROPOS_GMM.nii.gz 55-13-2060_labels.nii.gz -lstat > 55-13-2060_pre_ATROPOS_GMM.txt cd $(WORKDIR)/55-13-2060;sed -i "1,2d" 55-13-2060_pre_ATROPOS_GMM.txt cd $(WORKDIR)/55-13-2060;sed "s/\s\+/,/g" 55-13-2060_pre_ATROPOS_GMM.txt > 55-13-2060_pre_ATROPOS_GMM.csv cd $(WORKDIR)/55-13-2060;sed -i "s/^/55-13-2060_pre_ATROPOS_GMM,/" 55-13-2060_pre_ATROPOS_GMM.csv job_55-13-2060_wCSV_pre_ATROPOS_GMM_ECCENTRICITY: cd $(WORKDIR)/55-13-2060;c3d 55-13-2060_pre_ATROPOS_GMM_ECCENTRICITY.nii.gz 55-13-2060_labels.nii.gz -lstat > 55-13-2060_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/55-13-2060;sed -i "1,2d" 55-13-2060_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/55-13-2060;sed "s/\s\+/,/g" 55-13-2060_pre_ATROPOS_GMM_ECCENTRICITY.txt > 55-13-2060_pre_ATROPOS_GMM_ECCENTRICITY.csv cd $(WORKDIR)/55-13-2060;sed -i "s/^/55-13-2060_pre_ATROPOS_GMM_ECCENTRICITY,/" 55-13-2060_pre_ATROPOS_GMM_ECCENTRICITY.csv job_55-13-2060_wCSV_pre_ATROPOS_GMM_ELONGATION: cd $(WORKDIR)/55-13-2060;c3d 55-13-2060_pre_ATROPOS_GMM_ELONGATION.nii.gz 55-13-2060_labels.nii.gz -lstat > 55-13-2060_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/55-13-2060;sed -i "1,2d" 55-13-2060_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/55-13-2060;sed "s/\s\+/,/g" 55-13-2060_pre_ATROPOS_GMM_ELONGATION.txt > 55-13-2060_pre_ATROPOS_GMM_ELONGATION.csv cd $(WORKDIR)/55-13-2060;sed -i "s/^/55-13-2060_pre_ATROPOS_GMM_ELONGATION,/" 55-13-2060_pre_ATROPOS_GMM_ELONGATION.csv job_55-13-2060_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE: cd $(WORKDIR)/55-13-2060;c3d 55-13-2060_pre_ATROPOS_GMM_LABEL3_DISTANCE.nii.gz 55-13-2060_labels.nii.gz -lstat > 55-13-2060_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/55-13-2060;sed -i "1,2d" 55-13-2060_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/55-13-2060;sed "s/\s\+/,/g" 55-13-2060_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt > 55-13-2060_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv cd $(WORKDIR)/55-13-2060;sed -i "s/^/55-13-2060_pre_ATROPOS_GMM_LABEL3_DISTANCE,/" 55-13-2060_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv job_55-13-2060_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME: cd $(WORKDIR)/55-13-2060;c3d 55-13-2060_pre_ATROPOS_GMM_PHYSICAL_VOLUME.nii.gz 55-13-2060_labels.nii.gz -lstat > 55-13-2060_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/55-13-2060;sed -i "1,2d" 55-13-2060_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/55-13-2060;sed "s/\s\+/,/g" 55-13-2060_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt > 55-13-2060_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv cd $(WORKDIR)/55-13-2060;sed -i "s/^/55-13-2060_pre_ATROPOS_GMM_PHYSICAL_VOLUME,/" 55-13-2060_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv job_55-13-2060_wCSV_pre_ATROPOS_GMM_POSTERIORS1: cd $(WORKDIR)/55-13-2060;c3d 55-13-2060_pre_ATROPOS_GMM_POSTERIORS1.nii.gz 55-13-2060_labels.nii.gz -lstat > 55-13-2060_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/55-13-2060;sed -i "1,2d" 55-13-2060_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/55-13-2060;sed "s/\s\+/,/g" 55-13-2060_pre_ATROPOS_GMM_POSTERIORS1.txt > 55-13-2060_pre_ATROPOS_GMM_POSTERIORS1.csv cd $(WORKDIR)/55-13-2060;sed -i "s/^/55-13-2060_pre_ATROPOS_GMM_POSTERIORS1,/" 55-13-2060_pre_ATROPOS_GMM_POSTERIORS1.csv job_55-13-2060_wCSV_pre_ATROPOS_GMM_POSTERIORS2: cd $(WORKDIR)/55-13-2060;c3d 55-13-2060_pre_ATROPOS_GMM_POSTERIORS2.nii.gz 55-13-2060_labels.nii.gz -lstat > 55-13-2060_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/55-13-2060;sed -i "1,2d" 55-13-2060_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/55-13-2060;sed "s/\s\+/,/g" 55-13-2060_pre_ATROPOS_GMM_POSTERIORS2.txt > 55-13-2060_pre_ATROPOS_GMM_POSTERIORS2.csv cd $(WORKDIR)/55-13-2060;sed -i "s/^/55-13-2060_pre_ATROPOS_GMM_POSTERIORS2,/" 55-13-2060_pre_ATROPOS_GMM_POSTERIORS2.csv job_55-13-2060_wCSV_pre_ATROPOS_GMM_POSTERIORS3: cd $(WORKDIR)/55-13-2060;c3d 55-13-2060_pre_ATROPOS_GMM_POSTERIORS3.nii.gz 55-13-2060_labels.nii.gz -lstat > 55-13-2060_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/55-13-2060;sed -i "1,2d" 55-13-2060_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/55-13-2060;sed "s/\s\+/,/g" 55-13-2060_pre_ATROPOS_GMM_POSTERIORS3.txt > 55-13-2060_pre_ATROPOS_GMM_POSTERIORS3.csv cd $(WORKDIR)/55-13-2060;sed -i "s/^/55-13-2060_pre_ATROPOS_GMM_POSTERIORS3,/" 55-13-2060_pre_ATROPOS_GMM_POSTERIORS3.csv job_55-13-2060_wCSV_pre_ATROPOS_GMM_POSTERIORS4: cd $(WORKDIR)/55-13-2060;c3d 55-13-2060_pre_ATROPOS_GMM_POSTERIORS4.nii.gz 55-13-2060_labels.nii.gz -lstat > 55-13-2060_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/55-13-2060;sed -i "1,2d" 55-13-2060_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/55-13-2060;sed "s/\s\+/,/g" 55-13-2060_pre_ATROPOS_GMM_POSTERIORS4.txt > 55-13-2060_pre_ATROPOS_GMM_POSTERIORS4.csv cd $(WORKDIR)/55-13-2060;sed -i "s/^/55-13-2060_pre_ATROPOS_GMM_POSTERIORS4,/" 55-13-2060_pre_ATROPOS_GMM_POSTERIORS4.csv job_55-13-2060_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO: cd $(WORKDIR)/55-13-2060;c3d 55-13-2060_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.nii.gz 55-13-2060_labels.nii.gz -lstat > 55-13-2060_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/55-13-2060;sed -i "1,2d" 55-13-2060_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/55-13-2060;sed "s/\s\+/,/g" 55-13-2060_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt > 55-13-2060_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv cd $(WORKDIR)/55-13-2060;sed -i "s/^/55-13-2060_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO,/" 55-13-2060_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv job_55-13-2060_wCSV_pre_ENTROPY_RADIUS_1: cd $(WORKDIR)/55-13-2060;c3d 55-13-2060_pre_ENTROPY_RADIUS_1.nii.gz 55-13-2060_labels.nii.gz -lstat > 55-13-2060_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/55-13-2060;sed -i "1,2d" 55-13-2060_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/55-13-2060;sed "s/\s\+/,/g" 55-13-2060_pre_ENTROPY_RADIUS_1.txt > 55-13-2060_pre_ENTROPY_RADIUS_1.csv cd $(WORKDIR)/55-13-2060;sed -i "s/^/55-13-2060_pre_ENTROPY_RADIUS_1,/" 55-13-2060_pre_ENTROPY_RADIUS_1.csv job_55-13-2060_wCSV_pre_ENTROPY_RADIUS_3: cd $(WORKDIR)/55-13-2060;c3d 55-13-2060_pre_ENTROPY_RADIUS_3.nii.gz 55-13-2060_labels.nii.gz -lstat > 55-13-2060_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/55-13-2060;sed -i "1,2d" 55-13-2060_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/55-13-2060;sed "s/\s\+/,/g" 55-13-2060_pre_ENTROPY_RADIUS_3.txt > 55-13-2060_pre_ENTROPY_RADIUS_3.csv cd $(WORKDIR)/55-13-2060;sed -i "s/^/55-13-2060_pre_ENTROPY_RADIUS_3,/" 55-13-2060_pre_ENTROPY_RADIUS_3.csv job_55-13-2060_wCSV_pre_MEAN_RADIUS_1: cd $(WORKDIR)/55-13-2060;c3d 55-13-2060_pre_MEAN_RADIUS_1.nii.gz 55-13-2060_labels.nii.gz -lstat > 55-13-2060_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/55-13-2060;sed -i "1,2d" 55-13-2060_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/55-13-2060;sed "s/\s\+/,/g" 55-13-2060_pre_MEAN_RADIUS_1.txt > 55-13-2060_pre_MEAN_RADIUS_1.csv cd $(WORKDIR)/55-13-2060;sed -i "s/^/55-13-2060_pre_MEAN_RADIUS_1,/" 55-13-2060_pre_MEAN_RADIUS_1.csv job_55-13-2060_wCSV_pre_MEAN_RADIUS_3: cd $(WORKDIR)/55-13-2060;c3d 55-13-2060_pre_MEAN_RADIUS_3.nii.gz 55-13-2060_labels.nii.gz -lstat > 55-13-2060_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/55-13-2060;sed -i "1,2d" 55-13-2060_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/55-13-2060;sed "s/\s\+/,/g" 55-13-2060_pre_MEAN_RADIUS_3.txt > 55-13-2060_pre_MEAN_RADIUS_3.csv cd $(WORKDIR)/55-13-2060;sed -i "s/^/55-13-2060_pre_MEAN_RADIUS_3,/" 55-13-2060_pre_MEAN_RADIUS_3.csv job_55-13-2060_wCSV_pre_NORMALIZED: cd $(WORKDIR)/55-13-2060;c3d 55-13-2060_pre_NORMALIZED.nii.gz 55-13-2060_labels.nii.gz -lstat > 55-13-2060_pre_NORMALIZED.txt cd $(WORKDIR)/55-13-2060;sed -i "1,2d" 55-13-2060_pre_NORMALIZED.txt cd $(WORKDIR)/55-13-2060;sed "s/\s\+/,/g" 55-13-2060_pre_NORMALIZED.txt > 55-13-2060_pre_NORMALIZED.csv cd $(WORKDIR)/55-13-2060;sed -i "s/^/55-13-2060_pre_NORMALIZED,/" 55-13-2060_pre_NORMALIZED.csv job_55-13-2060_wCSV_pre_SIGMA_RADIUS_1: cd $(WORKDIR)/55-13-2060;c3d 55-13-2060_pre_SIGMA_RADIUS_1.nii.gz 55-13-2060_labels.nii.gz -lstat > 55-13-2060_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/55-13-2060;sed -i "1,2d" 55-13-2060_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/55-13-2060;sed "s/\s\+/,/g" 55-13-2060_pre_SIGMA_RADIUS_1.txt > 55-13-2060_pre_SIGMA_RADIUS_1.csv cd $(WORKDIR)/55-13-2060;sed -i "s/^/55-13-2060_pre_SIGMA_RADIUS_1,/" 55-13-2060_pre_SIGMA_RADIUS_1.csv job_55-13-2060_wCSV_pre_SIGMA_RADIUS_3: cd $(WORKDIR)/55-13-2060;c3d 55-13-2060_pre_SIGMA_RADIUS_3.nii.gz 55-13-2060_labels.nii.gz -lstat > 55-13-2060_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/55-13-2060;sed -i "1,2d" 55-13-2060_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/55-13-2060;sed "s/\s\+/,/g" 55-13-2060_pre_SIGMA_RADIUS_3.txt > 55-13-2060_pre_SIGMA_RADIUS_3.csv cd $(WORKDIR)/55-13-2060;sed -i "s/^/55-13-2060_pre_SIGMA_RADIUS_3,/" 55-13-2060_pre_SIGMA_RADIUS_3.csv job_55-13-2060_wCSV_pre_SKEWNESS_RADIUS_1: cd $(WORKDIR)/55-13-2060;c3d 55-13-2060_pre_SKEWNESS_RADIUS_1.nii.gz 55-13-2060_labels.nii.gz -lstat > 55-13-2060_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/55-13-2060;sed -i "1,2d" 55-13-2060_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/55-13-2060;sed "s/\s\+/,/g" 55-13-2060_pre_SKEWNESS_RADIUS_1.txt > 55-13-2060_pre_SKEWNESS_RADIUS_1.csv cd $(WORKDIR)/55-13-2060;sed -i "s/^/55-13-2060_pre_SKEWNESS_RADIUS_1,/" 55-13-2060_pre_SKEWNESS_RADIUS_1.csv job_55-13-2060_wCSV_pre_SKEWNESS_RADIUS_3: cd $(WORKDIR)/55-13-2060;c3d 55-13-2060_pre_SKEWNESS_RADIUS_3.nii.gz 55-13-2060_labels.nii.gz -lstat > 55-13-2060_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/55-13-2060;sed -i "1,2d" 55-13-2060_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/55-13-2060;sed "s/\s\+/,/g" 55-13-2060_pre_SKEWNESS_RADIUS_3.txt > 55-13-2060_pre_SKEWNESS_RADIUS_3.csv cd $(WORKDIR)/55-13-2060;sed -i "s/^/55-13-2060_pre_SKEWNESS_RADIUS_3,/" 55-13-2060_pre_SKEWNESS_RADIUS_3.csv job_55-13-2060_wCSV_pre__DIFFERENCE: cd $(WORKDIR)/55-13-2060;c3d 55-13-2060_pre__DIFFERENCE.nii.gz 55-13-2060_labels.nii.gz -lstat > 55-13-2060_pre__DIFFERENCE.txt cd $(WORKDIR)/55-13-2060;sed -i "1,2d" 55-13-2060_pre__DIFFERENCE.txt cd $(WORKDIR)/55-13-2060;sed "s/\s\+/,/g" 55-13-2060_pre__DIFFERENCE.txt > 55-13-2060_pre__DIFFERENCE.csv cd $(WORKDIR)/55-13-2060;sed -i "s/^/55-13-2060_pre__DIFFERENCE,/" 55-13-2060_pre__DIFFERENCE.csv job_56-13-2066_crFI: cd $(WORKDIR)/56-13-2066;c3d 56-13-2066_grey.nii.gz 56-13-2066_labels.nii.gz -copy-transform -o 56-13-2066_labels.nii.gz cd $(WORKDIR)/56-13-2066;c3d 56-13-2066_grey.nii.gz -orient RAI -o 56-13-2066_grey.nii.gz cd $(WORKDIR)/56-13-2066;c3d 56-13-2066_labels.nii.gz -orient RAI -o 56-13-2066_labels.nii.gz cd $(WORKDIR)/56-13-2066;c3d 56-13-2066_labels.nii.gz -binarize -o 56-13-2066_mask.nii.gz cd $(WORKDIR)/56-13-2066;../createFeatureImagesOvary.sh -d 3 -x 56-13-2066_mask.nii.gz -l3 -n pre -a 56-13-2066_grey.nii.gz -f 0x2 -o ./56-13-2066_ -r 1 -r 3 -s 2 -b 4 job_56-13-2066_wCSV_NORMALIZED_DISTANCE: cd $(WORKDIR)/56-13-2066;c3d 56-13-2066_NORMALIZED_DISTANCE.nii.gz 56-13-2066_labels.nii.gz -lstat > 56-13-2066_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/56-13-2066;sed -i "1,2d" 56-13-2066_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/56-13-2066;sed "s/\s\+/,/g" 56-13-2066_NORMALIZED_DISTANCE.txt > 56-13-2066_NORMALIZED_DISTANCE.csv cd $(WORKDIR)/56-13-2066;sed -i "s/^/56-13-2066_NORMALIZED_DISTANCE,/" 56-13-2066_NORMALIZED_DISTANCE.csv job_56-13-2066_wCSV_pre_ATROPOS_GMM: cd $(WORKDIR)/56-13-2066;c3d 56-13-2066_pre_ATROPOS_GMM.nii.gz 56-13-2066_labels.nii.gz -lstat > 56-13-2066_pre_ATROPOS_GMM.txt cd $(WORKDIR)/56-13-2066;sed -i "1,2d" 56-13-2066_pre_ATROPOS_GMM.txt cd $(WORKDIR)/56-13-2066;sed "s/\s\+/,/g" 56-13-2066_pre_ATROPOS_GMM.txt > 56-13-2066_pre_ATROPOS_GMM.csv cd $(WORKDIR)/56-13-2066;sed -i "s/^/56-13-2066_pre_ATROPOS_GMM,/" 56-13-2066_pre_ATROPOS_GMM.csv job_56-13-2066_wCSV_pre_ATROPOS_GMM_ECCENTRICITY: cd $(WORKDIR)/56-13-2066;c3d 56-13-2066_pre_ATROPOS_GMM_ECCENTRICITY.nii.gz 56-13-2066_labels.nii.gz -lstat > 56-13-2066_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/56-13-2066;sed -i "1,2d" 56-13-2066_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/56-13-2066;sed "s/\s\+/,/g" 56-13-2066_pre_ATROPOS_GMM_ECCENTRICITY.txt > 56-13-2066_pre_ATROPOS_GMM_ECCENTRICITY.csv cd $(WORKDIR)/56-13-2066;sed -i "s/^/56-13-2066_pre_ATROPOS_GMM_ECCENTRICITY,/" 56-13-2066_pre_ATROPOS_GMM_ECCENTRICITY.csv job_56-13-2066_wCSV_pre_ATROPOS_GMM_ELONGATION: cd $(WORKDIR)/56-13-2066;c3d 56-13-2066_pre_ATROPOS_GMM_ELONGATION.nii.gz 56-13-2066_labels.nii.gz -lstat > 56-13-2066_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/56-13-2066;sed -i "1,2d" 56-13-2066_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/56-13-2066;sed "s/\s\+/,/g" 56-13-2066_pre_ATROPOS_GMM_ELONGATION.txt > 56-13-2066_pre_ATROPOS_GMM_ELONGATION.csv cd $(WORKDIR)/56-13-2066;sed -i "s/^/56-13-2066_pre_ATROPOS_GMM_ELONGATION,/" 56-13-2066_pre_ATROPOS_GMM_ELONGATION.csv job_56-13-2066_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE: cd $(WORKDIR)/56-13-2066;c3d 56-13-2066_pre_ATROPOS_GMM_LABEL3_DISTANCE.nii.gz 56-13-2066_labels.nii.gz -lstat > 56-13-2066_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/56-13-2066;sed -i "1,2d" 56-13-2066_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/56-13-2066;sed "s/\s\+/,/g" 56-13-2066_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt > 56-13-2066_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv cd $(WORKDIR)/56-13-2066;sed -i "s/^/56-13-2066_pre_ATROPOS_GMM_LABEL3_DISTANCE,/" 56-13-2066_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv job_56-13-2066_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME: cd $(WORKDIR)/56-13-2066;c3d 56-13-2066_pre_ATROPOS_GMM_PHYSICAL_VOLUME.nii.gz 56-13-2066_labels.nii.gz -lstat > 56-13-2066_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/56-13-2066;sed -i "1,2d" 56-13-2066_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/56-13-2066;sed "s/\s\+/,/g" 56-13-2066_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt > 56-13-2066_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv cd $(WORKDIR)/56-13-2066;sed -i "s/^/56-13-2066_pre_ATROPOS_GMM_PHYSICAL_VOLUME,/" 56-13-2066_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv job_56-13-2066_wCSV_pre_ATROPOS_GMM_POSTERIORS1: cd $(WORKDIR)/56-13-2066;c3d 56-13-2066_pre_ATROPOS_GMM_POSTERIORS1.nii.gz 56-13-2066_labels.nii.gz -lstat > 56-13-2066_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/56-13-2066;sed -i "1,2d" 56-13-2066_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/56-13-2066;sed "s/\s\+/,/g" 56-13-2066_pre_ATROPOS_GMM_POSTERIORS1.txt > 56-13-2066_pre_ATROPOS_GMM_POSTERIORS1.csv cd $(WORKDIR)/56-13-2066;sed -i "s/^/56-13-2066_pre_ATROPOS_GMM_POSTERIORS1,/" 56-13-2066_pre_ATROPOS_GMM_POSTERIORS1.csv job_56-13-2066_wCSV_pre_ATROPOS_GMM_POSTERIORS2: cd $(WORKDIR)/56-13-2066;c3d 56-13-2066_pre_ATROPOS_GMM_POSTERIORS2.nii.gz 56-13-2066_labels.nii.gz -lstat > 56-13-2066_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/56-13-2066;sed -i "1,2d" 56-13-2066_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/56-13-2066;sed "s/\s\+/,/g" 56-13-2066_pre_ATROPOS_GMM_POSTERIORS2.txt > 56-13-2066_pre_ATROPOS_GMM_POSTERIORS2.csv cd $(WORKDIR)/56-13-2066;sed -i "s/^/56-13-2066_pre_ATROPOS_GMM_POSTERIORS2,/" 56-13-2066_pre_ATROPOS_GMM_POSTERIORS2.csv job_56-13-2066_wCSV_pre_ATROPOS_GMM_POSTERIORS3: cd $(WORKDIR)/56-13-2066;c3d 56-13-2066_pre_ATROPOS_GMM_POSTERIORS3.nii.gz 56-13-2066_labels.nii.gz -lstat > 56-13-2066_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/56-13-2066;sed -i "1,2d" 56-13-2066_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/56-13-2066;sed "s/\s\+/,/g" 56-13-2066_pre_ATROPOS_GMM_POSTERIORS3.txt > 56-13-2066_pre_ATROPOS_GMM_POSTERIORS3.csv cd $(WORKDIR)/56-13-2066;sed -i "s/^/56-13-2066_pre_ATROPOS_GMM_POSTERIORS3,/" 56-13-2066_pre_ATROPOS_GMM_POSTERIORS3.csv job_56-13-2066_wCSV_pre_ATROPOS_GMM_POSTERIORS4: cd $(WORKDIR)/56-13-2066;c3d 56-13-2066_pre_ATROPOS_GMM_POSTERIORS4.nii.gz 56-13-2066_labels.nii.gz -lstat > 56-13-2066_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/56-13-2066;sed -i "1,2d" 56-13-2066_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/56-13-2066;sed "s/\s\+/,/g" 56-13-2066_pre_ATROPOS_GMM_POSTERIORS4.txt > 56-13-2066_pre_ATROPOS_GMM_POSTERIORS4.csv cd $(WORKDIR)/56-13-2066;sed -i "s/^/56-13-2066_pre_ATROPOS_GMM_POSTERIORS4,/" 56-13-2066_pre_ATROPOS_GMM_POSTERIORS4.csv job_56-13-2066_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO: cd $(WORKDIR)/56-13-2066;c3d 56-13-2066_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.nii.gz 56-13-2066_labels.nii.gz -lstat > 56-13-2066_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/56-13-2066;sed -i "1,2d" 56-13-2066_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/56-13-2066;sed "s/\s\+/,/g" 56-13-2066_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt > 56-13-2066_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv cd $(WORKDIR)/56-13-2066;sed -i "s/^/56-13-2066_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO,/" 56-13-2066_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv job_56-13-2066_wCSV_pre_ENTROPY_RADIUS_1: cd $(WORKDIR)/56-13-2066;c3d 56-13-2066_pre_ENTROPY_RADIUS_1.nii.gz 56-13-2066_labels.nii.gz -lstat > 56-13-2066_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/56-13-2066;sed -i "1,2d" 56-13-2066_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/56-13-2066;sed "s/\s\+/,/g" 56-13-2066_pre_ENTROPY_RADIUS_1.txt > 56-13-2066_pre_ENTROPY_RADIUS_1.csv cd $(WORKDIR)/56-13-2066;sed -i "s/^/56-13-2066_pre_ENTROPY_RADIUS_1,/" 56-13-2066_pre_ENTROPY_RADIUS_1.csv job_56-13-2066_wCSV_pre_ENTROPY_RADIUS_3: cd $(WORKDIR)/56-13-2066;c3d 56-13-2066_pre_ENTROPY_RADIUS_3.nii.gz 56-13-2066_labels.nii.gz -lstat > 56-13-2066_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/56-13-2066;sed -i "1,2d" 56-13-2066_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/56-13-2066;sed "s/\s\+/,/g" 56-13-2066_pre_ENTROPY_RADIUS_3.txt > 56-13-2066_pre_ENTROPY_RADIUS_3.csv cd $(WORKDIR)/56-13-2066;sed -i "s/^/56-13-2066_pre_ENTROPY_RADIUS_3,/" 56-13-2066_pre_ENTROPY_RADIUS_3.csv job_56-13-2066_wCSV_pre_MEAN_RADIUS_1: cd $(WORKDIR)/56-13-2066;c3d 56-13-2066_pre_MEAN_RADIUS_1.nii.gz 56-13-2066_labels.nii.gz -lstat > 56-13-2066_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/56-13-2066;sed -i "1,2d" 56-13-2066_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/56-13-2066;sed "s/\s\+/,/g" 56-13-2066_pre_MEAN_RADIUS_1.txt > 56-13-2066_pre_MEAN_RADIUS_1.csv cd $(WORKDIR)/56-13-2066;sed -i "s/^/56-13-2066_pre_MEAN_RADIUS_1,/" 56-13-2066_pre_MEAN_RADIUS_1.csv job_56-13-2066_wCSV_pre_MEAN_RADIUS_3: cd $(WORKDIR)/56-13-2066;c3d 56-13-2066_pre_MEAN_RADIUS_3.nii.gz 56-13-2066_labels.nii.gz -lstat > 56-13-2066_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/56-13-2066;sed -i "1,2d" 56-13-2066_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/56-13-2066;sed "s/\s\+/,/g" 56-13-2066_pre_MEAN_RADIUS_3.txt > 56-13-2066_pre_MEAN_RADIUS_3.csv cd $(WORKDIR)/56-13-2066;sed -i "s/^/56-13-2066_pre_MEAN_RADIUS_3,/" 56-13-2066_pre_MEAN_RADIUS_3.csv job_56-13-2066_wCSV_pre_NORMALIZED: cd $(WORKDIR)/56-13-2066;c3d 56-13-2066_pre_NORMALIZED.nii.gz 56-13-2066_labels.nii.gz -lstat > 56-13-2066_pre_NORMALIZED.txt cd $(WORKDIR)/56-13-2066;sed -i "1,2d" 56-13-2066_pre_NORMALIZED.txt cd $(WORKDIR)/56-13-2066;sed "s/\s\+/,/g" 56-13-2066_pre_NORMALIZED.txt > 56-13-2066_pre_NORMALIZED.csv cd $(WORKDIR)/56-13-2066;sed -i "s/^/56-13-2066_pre_NORMALIZED,/" 56-13-2066_pre_NORMALIZED.csv job_56-13-2066_wCSV_pre_SIGMA_RADIUS_1: cd $(WORKDIR)/56-13-2066;c3d 56-13-2066_pre_SIGMA_RADIUS_1.nii.gz 56-13-2066_labels.nii.gz -lstat > 56-13-2066_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/56-13-2066;sed -i "1,2d" 56-13-2066_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/56-13-2066;sed "s/\s\+/,/g" 56-13-2066_pre_SIGMA_RADIUS_1.txt > 56-13-2066_pre_SIGMA_RADIUS_1.csv cd $(WORKDIR)/56-13-2066;sed -i "s/^/56-13-2066_pre_SIGMA_RADIUS_1,/" 56-13-2066_pre_SIGMA_RADIUS_1.csv job_56-13-2066_wCSV_pre_SIGMA_RADIUS_3: cd $(WORKDIR)/56-13-2066;c3d 56-13-2066_pre_SIGMA_RADIUS_3.nii.gz 56-13-2066_labels.nii.gz -lstat > 56-13-2066_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/56-13-2066;sed -i "1,2d" 56-13-2066_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/56-13-2066;sed "s/\s\+/,/g" 56-13-2066_pre_SIGMA_RADIUS_3.txt > 56-13-2066_pre_SIGMA_RADIUS_3.csv cd $(WORKDIR)/56-13-2066;sed -i "s/^/56-13-2066_pre_SIGMA_RADIUS_3,/" 56-13-2066_pre_SIGMA_RADIUS_3.csv job_56-13-2066_wCSV_pre_SKEWNESS_RADIUS_1: cd $(WORKDIR)/56-13-2066;c3d 56-13-2066_pre_SKEWNESS_RADIUS_1.nii.gz 56-13-2066_labels.nii.gz -lstat > 56-13-2066_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/56-13-2066;sed -i "1,2d" 56-13-2066_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/56-13-2066;sed "s/\s\+/,/g" 56-13-2066_pre_SKEWNESS_RADIUS_1.txt > 56-13-2066_pre_SKEWNESS_RADIUS_1.csv cd $(WORKDIR)/56-13-2066;sed -i "s/^/56-13-2066_pre_SKEWNESS_RADIUS_1,/" 56-13-2066_pre_SKEWNESS_RADIUS_1.csv job_56-13-2066_wCSV_pre_SKEWNESS_RADIUS_3: cd $(WORKDIR)/56-13-2066;c3d 56-13-2066_pre_SKEWNESS_RADIUS_3.nii.gz 56-13-2066_labels.nii.gz -lstat > 56-13-2066_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/56-13-2066;sed -i "1,2d" 56-13-2066_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/56-13-2066;sed "s/\s\+/,/g" 56-13-2066_pre_SKEWNESS_RADIUS_3.txt > 56-13-2066_pre_SKEWNESS_RADIUS_3.csv cd $(WORKDIR)/56-13-2066;sed -i "s/^/56-13-2066_pre_SKEWNESS_RADIUS_3,/" 56-13-2066_pre_SKEWNESS_RADIUS_3.csv job_56-13-2066_wCSV_pre__DIFFERENCE: cd $(WORKDIR)/56-13-2066;c3d 56-13-2066_pre__DIFFERENCE.nii.gz 56-13-2066_labels.nii.gz -lstat > 56-13-2066_pre__DIFFERENCE.txt cd $(WORKDIR)/56-13-2066;sed -i "1,2d" 56-13-2066_pre__DIFFERENCE.txt cd $(WORKDIR)/56-13-2066;sed "s/\s\+/,/g" 56-13-2066_pre__DIFFERENCE.txt > 56-13-2066_pre__DIFFERENCE.csv cd $(WORKDIR)/56-13-2066;sed -i "s/^/56-13-2066_pre__DIFFERENCE,/" 56-13-2066_pre__DIFFERENCE.csv job_57-13-2071_crFI: cd $(WORKDIR)/57-13-2071;c3d 57-13-2071_grey.nii.gz 57-13-2071_labels.nii.gz -copy-transform -o 57-13-2071_labels.nii.gz cd $(WORKDIR)/57-13-2071;c3d 57-13-2071_grey.nii.gz -orient RAI -o 57-13-2071_grey.nii.gz cd $(WORKDIR)/57-13-2071;c3d 57-13-2071_labels.nii.gz -orient RAI -o 57-13-2071_labels.nii.gz cd $(WORKDIR)/57-13-2071;c3d 57-13-2071_labels.nii.gz -binarize -o 57-13-2071_mask.nii.gz cd $(WORKDIR)/57-13-2071;../createFeatureImagesOvary.sh -d 3 -x 57-13-2071_mask.nii.gz -l3 -n pre -a 57-13-2071_grey.nii.gz -f 0x2 -o ./57-13-2071_ -r 1 -r 3 -s 2 -b 4 job_57-13-2071_wCSV_NORMALIZED_DISTANCE: cd $(WORKDIR)/57-13-2071;c3d 57-13-2071_NORMALIZED_DISTANCE.nii.gz 57-13-2071_labels.nii.gz -lstat > 57-13-2071_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/57-13-2071;sed -i "1,2d" 57-13-2071_NORMALIZED_DISTANCE.txt cd $(WORKDIR)/57-13-2071;sed "s/\s\+/,/g" 57-13-2071_NORMALIZED_DISTANCE.txt > 57-13-2071_NORMALIZED_DISTANCE.csv cd $(WORKDIR)/57-13-2071;sed -i "s/^/57-13-2071_NORMALIZED_DISTANCE,/" 57-13-2071_NORMALIZED_DISTANCE.csv job_57-13-2071_wCSV_pre_ATROPOS_GMM: cd $(WORKDIR)/57-13-2071;c3d 57-13-2071_pre_ATROPOS_GMM.nii.gz 57-13-2071_labels.nii.gz -lstat > 57-13-2071_pre_ATROPOS_GMM.txt cd $(WORKDIR)/57-13-2071;sed -i "1,2d" 57-13-2071_pre_ATROPOS_GMM.txt cd $(WORKDIR)/57-13-2071;sed "s/\s\+/,/g" 57-13-2071_pre_ATROPOS_GMM.txt > 57-13-2071_pre_ATROPOS_GMM.csv cd $(WORKDIR)/57-13-2071;sed -i "s/^/57-13-2071_pre_ATROPOS_GMM,/" 57-13-2071_pre_ATROPOS_GMM.csv job_57-13-2071_wCSV_pre_ATROPOS_GMM_ECCENTRICITY: cd $(WORKDIR)/57-13-2071;c3d 57-13-2071_pre_ATROPOS_GMM_ECCENTRICITY.nii.gz 57-13-2071_labels.nii.gz -lstat > 57-13-2071_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/57-13-2071;sed -i "1,2d" 57-13-2071_pre_ATROPOS_GMM_ECCENTRICITY.txt cd $(WORKDIR)/57-13-2071;sed "s/\s\+/,/g" 57-13-2071_pre_ATROPOS_GMM_ECCENTRICITY.txt > 57-13-2071_pre_ATROPOS_GMM_ECCENTRICITY.csv cd $(WORKDIR)/57-13-2071;sed -i "s/^/57-13-2071_pre_ATROPOS_GMM_ECCENTRICITY,/" 57-13-2071_pre_ATROPOS_GMM_ECCENTRICITY.csv job_57-13-2071_wCSV_pre_ATROPOS_GMM_ELONGATION: cd $(WORKDIR)/57-13-2071;c3d 57-13-2071_pre_ATROPOS_GMM_ELONGATION.nii.gz 57-13-2071_labels.nii.gz -lstat > 57-13-2071_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/57-13-2071;sed -i "1,2d" 57-13-2071_pre_ATROPOS_GMM_ELONGATION.txt cd $(WORKDIR)/57-13-2071;sed "s/\s\+/,/g" 57-13-2071_pre_ATROPOS_GMM_ELONGATION.txt > 57-13-2071_pre_ATROPOS_GMM_ELONGATION.csv cd $(WORKDIR)/57-13-2071;sed -i "s/^/57-13-2071_pre_ATROPOS_GMM_ELONGATION,/" 57-13-2071_pre_ATROPOS_GMM_ELONGATION.csv job_57-13-2071_wCSV_pre_ATROPOS_GMM_LABEL3_DISTANCE: cd $(WORKDIR)/57-13-2071;c3d 57-13-2071_pre_ATROPOS_GMM_LABEL3_DISTANCE.nii.gz 57-13-2071_labels.nii.gz -lstat > 57-13-2071_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/57-13-2071;sed -i "1,2d" 57-13-2071_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt cd $(WORKDIR)/57-13-2071;sed "s/\s\+/,/g" 57-13-2071_pre_ATROPOS_GMM_LABEL3_DISTANCE.txt > 57-13-2071_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv cd $(WORKDIR)/57-13-2071;sed -i "s/^/57-13-2071_pre_ATROPOS_GMM_LABEL3_DISTANCE,/" 57-13-2071_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv job_57-13-2071_wCSV_pre_ATROPOS_GMM_PHYSICAL_VOLUME: cd $(WORKDIR)/57-13-2071;c3d 57-13-2071_pre_ATROPOS_GMM_PHYSICAL_VOLUME.nii.gz 57-13-2071_labels.nii.gz -lstat > 57-13-2071_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/57-13-2071;sed -i "1,2d" 57-13-2071_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt cd $(WORKDIR)/57-13-2071;sed "s/\s\+/,/g" 57-13-2071_pre_ATROPOS_GMM_PHYSICAL_VOLUME.txt > 57-13-2071_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv cd $(WORKDIR)/57-13-2071;sed -i "s/^/57-13-2071_pre_ATROPOS_GMM_PHYSICAL_VOLUME,/" 57-13-2071_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv job_57-13-2071_wCSV_pre_ATROPOS_GMM_POSTERIORS1: cd $(WORKDIR)/57-13-2071;c3d 57-13-2071_pre_ATROPOS_GMM_POSTERIORS1.nii.gz 57-13-2071_labels.nii.gz -lstat > 57-13-2071_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/57-13-2071;sed -i "1,2d" 57-13-2071_pre_ATROPOS_GMM_POSTERIORS1.txt cd $(WORKDIR)/57-13-2071;sed "s/\s\+/,/g" 57-13-2071_pre_ATROPOS_GMM_POSTERIORS1.txt > 57-13-2071_pre_ATROPOS_GMM_POSTERIORS1.csv cd $(WORKDIR)/57-13-2071;sed -i "s/^/57-13-2071_pre_ATROPOS_GMM_POSTERIORS1,/" 57-13-2071_pre_ATROPOS_GMM_POSTERIORS1.csv job_57-13-2071_wCSV_pre_ATROPOS_GMM_POSTERIORS2: cd $(WORKDIR)/57-13-2071;c3d 57-13-2071_pre_ATROPOS_GMM_POSTERIORS2.nii.gz 57-13-2071_labels.nii.gz -lstat > 57-13-2071_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/57-13-2071;sed -i "1,2d" 57-13-2071_pre_ATROPOS_GMM_POSTERIORS2.txt cd $(WORKDIR)/57-13-2071;sed "s/\s\+/,/g" 57-13-2071_pre_ATROPOS_GMM_POSTERIORS2.txt > 57-13-2071_pre_ATROPOS_GMM_POSTERIORS2.csv cd $(WORKDIR)/57-13-2071;sed -i "s/^/57-13-2071_pre_ATROPOS_GMM_POSTERIORS2,/" 57-13-2071_pre_ATROPOS_GMM_POSTERIORS2.csv job_57-13-2071_wCSV_pre_ATROPOS_GMM_POSTERIORS3: cd $(WORKDIR)/57-13-2071;c3d 57-13-2071_pre_ATROPOS_GMM_POSTERIORS3.nii.gz 57-13-2071_labels.nii.gz -lstat > 57-13-2071_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/57-13-2071;sed -i "1,2d" 57-13-2071_pre_ATROPOS_GMM_POSTERIORS3.txt cd $(WORKDIR)/57-13-2071;sed "s/\s\+/,/g" 57-13-2071_pre_ATROPOS_GMM_POSTERIORS3.txt > 57-13-2071_pre_ATROPOS_GMM_POSTERIORS3.csv cd $(WORKDIR)/57-13-2071;sed -i "s/^/57-13-2071_pre_ATROPOS_GMM_POSTERIORS3,/" 57-13-2071_pre_ATROPOS_GMM_POSTERIORS3.csv job_57-13-2071_wCSV_pre_ATROPOS_GMM_POSTERIORS4: cd $(WORKDIR)/57-13-2071;c3d 57-13-2071_pre_ATROPOS_GMM_POSTERIORS4.nii.gz 57-13-2071_labels.nii.gz -lstat > 57-13-2071_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/57-13-2071;sed -i "1,2d" 57-13-2071_pre_ATROPOS_GMM_POSTERIORS4.txt cd $(WORKDIR)/57-13-2071;sed "s/\s\+/,/g" 57-13-2071_pre_ATROPOS_GMM_POSTERIORS4.txt > 57-13-2071_pre_ATROPOS_GMM_POSTERIORS4.csv cd $(WORKDIR)/57-13-2071;sed -i "s/^/57-13-2071_pre_ATROPOS_GMM_POSTERIORS4,/" 57-13-2071_pre_ATROPOS_GMM_POSTERIORS4.csv job_57-13-2071_wCSV_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO: cd $(WORKDIR)/57-13-2071;c3d 57-13-2071_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.nii.gz 57-13-2071_labels.nii.gz -lstat > 57-13-2071_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/57-13-2071;sed -i "1,2d" 57-13-2071_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt cd $(WORKDIR)/57-13-2071;sed "s/\s\+/,/g" 57-13-2071_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.txt > 57-13-2071_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv cd $(WORKDIR)/57-13-2071;sed -i "s/^/57-13-2071_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO,/" 57-13-2071_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv job_57-13-2071_wCSV_pre_ENTROPY_RADIUS_1: cd $(WORKDIR)/57-13-2071;c3d 57-13-2071_pre_ENTROPY_RADIUS_1.nii.gz 57-13-2071_labels.nii.gz -lstat > 57-13-2071_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/57-13-2071;sed -i "1,2d" 57-13-2071_pre_ENTROPY_RADIUS_1.txt cd $(WORKDIR)/57-13-2071;sed "s/\s\+/,/g" 57-13-2071_pre_ENTROPY_RADIUS_1.txt > 57-13-2071_pre_ENTROPY_RADIUS_1.csv cd $(WORKDIR)/57-13-2071;sed -i "s/^/57-13-2071_pre_ENTROPY_RADIUS_1,/" 57-13-2071_pre_ENTROPY_RADIUS_1.csv job_57-13-2071_wCSV_pre_ENTROPY_RADIUS_3: cd $(WORKDIR)/57-13-2071;c3d 57-13-2071_pre_ENTROPY_RADIUS_3.nii.gz 57-13-2071_labels.nii.gz -lstat > 57-13-2071_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/57-13-2071;sed -i "1,2d" 57-13-2071_pre_ENTROPY_RADIUS_3.txt cd $(WORKDIR)/57-13-2071;sed "s/\s\+/,/g" 57-13-2071_pre_ENTROPY_RADIUS_3.txt > 57-13-2071_pre_ENTROPY_RADIUS_3.csv cd $(WORKDIR)/57-13-2071;sed -i "s/^/57-13-2071_pre_ENTROPY_RADIUS_3,/" 57-13-2071_pre_ENTROPY_RADIUS_3.csv job_57-13-2071_wCSV_pre_MEAN_RADIUS_1: cd $(WORKDIR)/57-13-2071;c3d 57-13-2071_pre_MEAN_RADIUS_1.nii.gz 57-13-2071_labels.nii.gz -lstat > 57-13-2071_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/57-13-2071;sed -i "1,2d" 57-13-2071_pre_MEAN_RADIUS_1.txt cd $(WORKDIR)/57-13-2071;sed "s/\s\+/,/g" 57-13-2071_pre_MEAN_RADIUS_1.txt > 57-13-2071_pre_MEAN_RADIUS_1.csv cd $(WORKDIR)/57-13-2071;sed -i "s/^/57-13-2071_pre_MEAN_RADIUS_1,/" 57-13-2071_pre_MEAN_RADIUS_1.csv job_57-13-2071_wCSV_pre_MEAN_RADIUS_3: cd $(WORKDIR)/57-13-2071;c3d 57-13-2071_pre_MEAN_RADIUS_3.nii.gz 57-13-2071_labels.nii.gz -lstat > 57-13-2071_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/57-13-2071;sed -i "1,2d" 57-13-2071_pre_MEAN_RADIUS_3.txt cd $(WORKDIR)/57-13-2071;sed "s/\s\+/,/g" 57-13-2071_pre_MEAN_RADIUS_3.txt > 57-13-2071_pre_MEAN_RADIUS_3.csv cd $(WORKDIR)/57-13-2071;sed -i "s/^/57-13-2071_pre_MEAN_RADIUS_3,/" 57-13-2071_pre_MEAN_RADIUS_3.csv job_57-13-2071_wCSV_pre_NORMALIZED: cd $(WORKDIR)/57-13-2071;c3d 57-13-2071_pre_NORMALIZED.nii.gz 57-13-2071_labels.nii.gz -lstat > 57-13-2071_pre_NORMALIZED.txt cd $(WORKDIR)/57-13-2071;sed -i "1,2d" 57-13-2071_pre_NORMALIZED.txt cd $(WORKDIR)/57-13-2071;sed "s/\s\+/,/g" 57-13-2071_pre_NORMALIZED.txt > 57-13-2071_pre_NORMALIZED.csv cd $(WORKDIR)/57-13-2071;sed -i "s/^/57-13-2071_pre_NORMALIZED,/" 57-13-2071_pre_NORMALIZED.csv job_57-13-2071_wCSV_pre_SIGMA_RADIUS_1: cd $(WORKDIR)/57-13-2071;c3d 57-13-2071_pre_SIGMA_RADIUS_1.nii.gz 57-13-2071_labels.nii.gz -lstat > 57-13-2071_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/57-13-2071;sed -i "1,2d" 57-13-2071_pre_SIGMA_RADIUS_1.txt cd $(WORKDIR)/57-13-2071;sed "s/\s\+/,/g" 57-13-2071_pre_SIGMA_RADIUS_1.txt > 57-13-2071_pre_SIGMA_RADIUS_1.csv cd $(WORKDIR)/57-13-2071;sed -i "s/^/57-13-2071_pre_SIGMA_RADIUS_1,/" 57-13-2071_pre_SIGMA_RADIUS_1.csv job_57-13-2071_wCSV_pre_SIGMA_RADIUS_3: cd $(WORKDIR)/57-13-2071;c3d 57-13-2071_pre_SIGMA_RADIUS_3.nii.gz 57-13-2071_labels.nii.gz -lstat > 57-13-2071_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/57-13-2071;sed -i "1,2d" 57-13-2071_pre_SIGMA_RADIUS_3.txt cd $(WORKDIR)/57-13-2071;sed "s/\s\+/,/g" 57-13-2071_pre_SIGMA_RADIUS_3.txt > 57-13-2071_pre_SIGMA_RADIUS_3.csv cd $(WORKDIR)/57-13-2071;sed -i "s/^/57-13-2071_pre_SIGMA_RADIUS_3,/" 57-13-2071_pre_SIGMA_RADIUS_3.csv job_57-13-2071_wCSV_pre_SKEWNESS_RADIUS_1: cd $(WORKDIR)/57-13-2071;c3d 57-13-2071_pre_SKEWNESS_RADIUS_1.nii.gz 57-13-2071_labels.nii.gz -lstat > 57-13-2071_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/57-13-2071;sed -i "1,2d" 57-13-2071_pre_SKEWNESS_RADIUS_1.txt cd $(WORKDIR)/57-13-2071;sed "s/\s\+/,/g" 57-13-2071_pre_SKEWNESS_RADIUS_1.txt > 57-13-2071_pre_SKEWNESS_RADIUS_1.csv cd $(WORKDIR)/57-13-2071;sed -i "s/^/57-13-2071_pre_SKEWNESS_RADIUS_1,/" 57-13-2071_pre_SKEWNESS_RADIUS_1.csv job_57-13-2071_wCSV_pre_SKEWNESS_RADIUS_3: cd $(WORKDIR)/57-13-2071;c3d 57-13-2071_pre_SKEWNESS_RADIUS_3.nii.gz 57-13-2071_labels.nii.gz -lstat > 57-13-2071_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/57-13-2071;sed -i "1,2d" 57-13-2071_pre_SKEWNESS_RADIUS_3.txt cd $(WORKDIR)/57-13-2071;sed "s/\s\+/,/g" 57-13-2071_pre_SKEWNESS_RADIUS_3.txt > 57-13-2071_pre_SKEWNESS_RADIUS_3.csv cd $(WORKDIR)/57-13-2071;sed -i "s/^/57-13-2071_pre_SKEWNESS_RADIUS_3,/" 57-13-2071_pre_SKEWNESS_RADIUS_3.csv job_57-13-2071_wCSV_pre__DIFFERENCE: cd $(WORKDIR)/57-13-2071;c3d 57-13-2071_pre__DIFFERENCE.nii.gz 57-13-2071_labels.nii.gz -lstat > 57-13-2071_pre__DIFFERENCE.txt cd $(WORKDIR)/57-13-2071;sed -i "1,2d" 57-13-2071_pre__DIFFERENCE.txt cd $(WORKDIR)/57-13-2071;sed "s/\s\+/,/g" 57-13-2071_pre__DIFFERENCE.txt > 57-13-2071_pre__DIFFERENCE.csv cd $(WORKDIR)/57-13-2071;sed -i "s/^/57-13-2071_pre__DIFFERENCE,/" 57-13-2071_pre__DIFFERENCE.csv job-create-master-sheet: cd $(WORKDIR);touch ./mastersheetOV.csv cd $(WORKDIR);cat ./01-09-0364/01-09-0364_NORMALIZED_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./01-09-0364/01-09-0364_pre_ATROPOS_GMM.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./01-09-0364/01-09-0364_pre_ATROPOS_GMM_ECCENTRICITY.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./01-09-0364/01-09-0364_pre_ATROPOS_GMM_ELONGATION.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./01-09-0364/01-09-0364_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./01-09-0364/01-09-0364_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./01-09-0364/01-09-0364_pre_ATROPOS_GMM_POSTERIORS1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./01-09-0364/01-09-0364_pre_ATROPOS_GMM_POSTERIORS2.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./01-09-0364/01-09-0364_pre_ATROPOS_GMM_POSTERIORS3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./01-09-0364/01-09-0364_pre_ATROPOS_GMM_POSTERIORS4.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./01-09-0364/01-09-0364_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./01-09-0364/01-09-0364_pre_ENTROPY_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./01-09-0364/01-09-0364_pre_ENTROPY_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./01-09-0364/01-09-0364_pre_MEAN_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./01-09-0364/01-09-0364_pre_MEAN_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./01-09-0364/01-09-0364_pre_NORMALIZED.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./01-09-0364/01-09-0364_pre_SIGMA_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./01-09-0364/01-09-0364_pre_SIGMA_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./01-09-0364/01-09-0364_pre_SKEWNESS_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./01-09-0364/01-09-0364_pre_SKEWNESS_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./01-09-0364/01-09-0364_pre__DIFFERENCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./02-09-0367/02-09-0367_NORMALIZED_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./02-09-0367/02-09-0367_pre_ATROPOS_GMM.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./02-09-0367/02-09-0367_pre_ATROPOS_GMM_ECCENTRICITY.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./02-09-0367/02-09-0367_pre_ATROPOS_GMM_ELONGATION.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./02-09-0367/02-09-0367_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./02-09-0367/02-09-0367_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./02-09-0367/02-09-0367_pre_ATROPOS_GMM_POSTERIORS1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./02-09-0367/02-09-0367_pre_ATROPOS_GMM_POSTERIORS2.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./02-09-0367/02-09-0367_pre_ATROPOS_GMM_POSTERIORS3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./02-09-0367/02-09-0367_pre_ATROPOS_GMM_POSTERIORS4.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./02-09-0367/02-09-0367_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./02-09-0367/02-09-0367_pre_ENTROPY_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./02-09-0367/02-09-0367_pre_ENTROPY_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./02-09-0367/02-09-0367_pre_MEAN_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./02-09-0367/02-09-0367_pre_MEAN_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./02-09-0367/02-09-0367_pre_NORMALIZED.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./02-09-0367/02-09-0367_pre_SIGMA_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./02-09-0367/02-09-0367_pre_SIGMA_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./02-09-0367/02-09-0367_pre_SKEWNESS_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./02-09-0367/02-09-0367_pre_SKEWNESS_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./02-09-0367/02-09-0367_pre__DIFFERENCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./03-09-0369/03-09-0369_NORMALIZED_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./03-09-0369/03-09-0369_pre_ATROPOS_GMM.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./03-09-0369/03-09-0369_pre_ATROPOS_GMM_ECCENTRICITY.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./03-09-0369/03-09-0369_pre_ATROPOS_GMM_ELONGATION.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./03-09-0369/03-09-0369_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./03-09-0369/03-09-0369_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./03-09-0369/03-09-0369_pre_ATROPOS_GMM_POSTERIORS1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./03-09-0369/03-09-0369_pre_ATROPOS_GMM_POSTERIORS2.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./03-09-0369/03-09-0369_pre_ATROPOS_GMM_POSTERIORS3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./03-09-0369/03-09-0369_pre_ATROPOS_GMM_POSTERIORS4.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./03-09-0369/03-09-0369_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./03-09-0369/03-09-0369_pre_ENTROPY_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./03-09-0369/03-09-0369_pre_ENTROPY_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./03-09-0369/03-09-0369_pre_MEAN_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./03-09-0369/03-09-0369_pre_MEAN_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./03-09-0369/03-09-0369_pre_NORMALIZED.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./03-09-0369/03-09-0369_pre_SIGMA_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./03-09-0369/03-09-0369_pre_SIGMA_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./03-09-0369/03-09-0369_pre_SKEWNESS_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./03-09-0369/03-09-0369_pre_SKEWNESS_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./03-09-0369/03-09-0369_pre__DIFFERENCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./04-09-1659/04-09-1659_NORMALIZED_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./04-09-1659/04-09-1659_pre_ATROPOS_GMM.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./04-09-1659/04-09-1659_pre_ATROPOS_GMM_ECCENTRICITY.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./04-09-1659/04-09-1659_pre_ATROPOS_GMM_ELONGATION.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./04-09-1659/04-09-1659_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./04-09-1659/04-09-1659_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./04-09-1659/04-09-1659_pre_ATROPOS_GMM_POSTERIORS1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./04-09-1659/04-09-1659_pre_ATROPOS_GMM_POSTERIORS2.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./04-09-1659/04-09-1659_pre_ATROPOS_GMM_POSTERIORS3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./04-09-1659/04-09-1659_pre_ATROPOS_GMM_POSTERIORS4.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./04-09-1659/04-09-1659_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./04-09-1659/04-09-1659_pre_ENTROPY_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./04-09-1659/04-09-1659_pre_ENTROPY_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./04-09-1659/04-09-1659_pre_MEAN_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./04-09-1659/04-09-1659_pre_MEAN_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./04-09-1659/04-09-1659_pre_NORMALIZED.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./04-09-1659/04-09-1659_pre_SIGMA_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./04-09-1659/04-09-1659_pre_SIGMA_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./04-09-1659/04-09-1659_pre_SKEWNESS_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./04-09-1659/04-09-1659_pre_SKEWNESS_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./04-09-1659/04-09-1659_pre__DIFFERENCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./05-09-1667/05-09-1667_NORMALIZED_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./05-09-1667/05-09-1667_pre_ATROPOS_GMM.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./05-09-1667/05-09-1667_pre_ATROPOS_GMM_ECCENTRICITY.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./05-09-1667/05-09-1667_pre_ATROPOS_GMM_ELONGATION.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./05-09-1667/05-09-1667_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./05-09-1667/05-09-1667_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./05-09-1667/05-09-1667_pre_ATROPOS_GMM_POSTERIORS1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./05-09-1667/05-09-1667_pre_ATROPOS_GMM_POSTERIORS2.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./05-09-1667/05-09-1667_pre_ATROPOS_GMM_POSTERIORS3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./05-09-1667/05-09-1667_pre_ATROPOS_GMM_POSTERIORS4.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./05-09-1667/05-09-1667_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./05-09-1667/05-09-1667_pre_ENTROPY_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./05-09-1667/05-09-1667_pre_ENTROPY_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./05-09-1667/05-09-1667_pre_MEAN_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./05-09-1667/05-09-1667_pre_MEAN_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./05-09-1667/05-09-1667_pre_NORMALIZED.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./05-09-1667/05-09-1667_pre_SIGMA_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./05-09-1667/05-09-1667_pre_SIGMA_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./05-09-1667/05-09-1667_pre_SKEWNESS_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./05-09-1667/05-09-1667_pre_SKEWNESS_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./05-09-1667/05-09-1667_pre__DIFFERENCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./06-09-1669/06-09-1669_NORMALIZED_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./06-09-1669/06-09-1669_pre_ATROPOS_GMM.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./06-09-1669/06-09-1669_pre_ATROPOS_GMM_ECCENTRICITY.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./06-09-1669/06-09-1669_pre_ATROPOS_GMM_ELONGATION.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./06-09-1669/06-09-1669_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./06-09-1669/06-09-1669_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./06-09-1669/06-09-1669_pre_ATROPOS_GMM_POSTERIORS1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./06-09-1669/06-09-1669_pre_ATROPOS_GMM_POSTERIORS2.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./06-09-1669/06-09-1669_pre_ATROPOS_GMM_POSTERIORS3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./06-09-1669/06-09-1669_pre_ATROPOS_GMM_POSTERIORS4.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./06-09-1669/06-09-1669_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./06-09-1669/06-09-1669_pre_ENTROPY_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./06-09-1669/06-09-1669_pre_ENTROPY_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./06-09-1669/06-09-1669_pre_MEAN_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./06-09-1669/06-09-1669_pre_MEAN_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./06-09-1669/06-09-1669_pre_NORMALIZED.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./06-09-1669/06-09-1669_pre_SIGMA_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./06-09-1669/06-09-1669_pre_SIGMA_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./06-09-1669/06-09-1669_pre_SKEWNESS_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./06-09-1669/06-09-1669_pre_SKEWNESS_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./06-09-1669/06-09-1669_pre__DIFFERENCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./07-09-1672/07-09-1672_NORMALIZED_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./07-09-1672/07-09-1672_pre_ATROPOS_GMM.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./07-09-1672/07-09-1672_pre_ATROPOS_GMM_ECCENTRICITY.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./07-09-1672/07-09-1672_pre_ATROPOS_GMM_ELONGATION.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./07-09-1672/07-09-1672_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./07-09-1672/07-09-1672_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./07-09-1672/07-09-1672_pre_ATROPOS_GMM_POSTERIORS1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./07-09-1672/07-09-1672_pre_ATROPOS_GMM_POSTERIORS2.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./07-09-1672/07-09-1672_pre_ATROPOS_GMM_POSTERIORS3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./07-09-1672/07-09-1672_pre_ATROPOS_GMM_POSTERIORS4.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./07-09-1672/07-09-1672_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./07-09-1672/07-09-1672_pre_ENTROPY_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./07-09-1672/07-09-1672_pre_ENTROPY_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./07-09-1672/07-09-1672_pre_MEAN_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./07-09-1672/07-09-1672_pre_MEAN_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./07-09-1672/07-09-1672_pre_NORMALIZED.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./07-09-1672/07-09-1672_pre_SIGMA_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./07-09-1672/07-09-1672_pre_SIGMA_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./07-09-1672/07-09-1672_pre_SKEWNESS_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./07-09-1672/07-09-1672_pre_SKEWNESS_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./07-09-1672/07-09-1672_pre__DIFFERENCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./08-09-1673/08-09-1673_NORMALIZED_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./08-09-1673/08-09-1673_pre_ATROPOS_GMM.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./08-09-1673/08-09-1673_pre_ATROPOS_GMM_ECCENTRICITY.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./08-09-1673/08-09-1673_pre_ATROPOS_GMM_ELONGATION.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./08-09-1673/08-09-1673_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./08-09-1673/08-09-1673_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./08-09-1673/08-09-1673_pre_ATROPOS_GMM_POSTERIORS1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./08-09-1673/08-09-1673_pre_ATROPOS_GMM_POSTERIORS2.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./08-09-1673/08-09-1673_pre_ATROPOS_GMM_POSTERIORS3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./08-09-1673/08-09-1673_pre_ATROPOS_GMM_POSTERIORS4.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./08-09-1673/08-09-1673_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./08-09-1673/08-09-1673_pre_ENTROPY_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./08-09-1673/08-09-1673_pre_ENTROPY_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./08-09-1673/08-09-1673_pre_MEAN_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./08-09-1673/08-09-1673_pre_MEAN_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./08-09-1673/08-09-1673_pre_NORMALIZED.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./08-09-1673/08-09-1673_pre_SIGMA_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./08-09-1673/08-09-1673_pre_SIGMA_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./08-09-1673/08-09-1673_pre_SKEWNESS_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./08-09-1673/08-09-1673_pre_SKEWNESS_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./08-09-1673/08-09-1673_pre__DIFFERENCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./09-09-1674/09-09-1674_NORMALIZED_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./09-09-1674/09-09-1674_pre_ATROPOS_GMM.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./09-09-1674/09-09-1674_pre_ATROPOS_GMM_ECCENTRICITY.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./09-09-1674/09-09-1674_pre_ATROPOS_GMM_ELONGATION.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./09-09-1674/09-09-1674_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./09-09-1674/09-09-1674_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./09-09-1674/09-09-1674_pre_ATROPOS_GMM_POSTERIORS1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./09-09-1674/09-09-1674_pre_ATROPOS_GMM_POSTERIORS2.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./09-09-1674/09-09-1674_pre_ATROPOS_GMM_POSTERIORS3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./09-09-1674/09-09-1674_pre_ATROPOS_GMM_POSTERIORS4.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./09-09-1674/09-09-1674_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./09-09-1674/09-09-1674_pre_ENTROPY_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./09-09-1674/09-09-1674_pre_ENTROPY_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./09-09-1674/09-09-1674_pre_MEAN_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./09-09-1674/09-09-1674_pre_MEAN_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./09-09-1674/09-09-1674_pre_NORMALIZED.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./09-09-1674/09-09-1674_pre_SIGMA_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./09-09-1674/09-09-1674_pre_SIGMA_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./09-09-1674/09-09-1674_pre_SKEWNESS_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./09-09-1674/09-09-1674_pre_SKEWNESS_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./09-09-1674/09-09-1674_pre__DIFFERENCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./10-09-1675/10-09-1675_NORMALIZED_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./10-09-1675/10-09-1675_pre_ATROPOS_GMM.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./10-09-1675/10-09-1675_pre_ATROPOS_GMM_ECCENTRICITY.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./10-09-1675/10-09-1675_pre_ATROPOS_GMM_ELONGATION.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./10-09-1675/10-09-1675_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./10-09-1675/10-09-1675_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./10-09-1675/10-09-1675_pre_ATROPOS_GMM_POSTERIORS1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./10-09-1675/10-09-1675_pre_ATROPOS_GMM_POSTERIORS2.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./10-09-1675/10-09-1675_pre_ATROPOS_GMM_POSTERIORS3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./10-09-1675/10-09-1675_pre_ATROPOS_GMM_POSTERIORS4.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./10-09-1675/10-09-1675_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./10-09-1675/10-09-1675_pre_ENTROPY_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./10-09-1675/10-09-1675_pre_ENTROPY_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./10-09-1675/10-09-1675_pre_MEAN_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./10-09-1675/10-09-1675_pre_MEAN_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./10-09-1675/10-09-1675_pre_NORMALIZED.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./10-09-1675/10-09-1675_pre_SIGMA_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./10-09-1675/10-09-1675_pre_SIGMA_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./10-09-1675/10-09-1675_pre_SKEWNESS_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./10-09-1675/10-09-1675_pre_SKEWNESS_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./10-09-1675/10-09-1675_pre__DIFFERENCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./11-09-2043/11-09-2043_NORMALIZED_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./11-09-2043/11-09-2043_pre_ATROPOS_GMM.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./11-09-2043/11-09-2043_pre_ATROPOS_GMM_ECCENTRICITY.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./11-09-2043/11-09-2043_pre_ATROPOS_GMM_ELONGATION.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./11-09-2043/11-09-2043_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./11-09-2043/11-09-2043_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./11-09-2043/11-09-2043_pre_ATROPOS_GMM_POSTERIORS1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./11-09-2043/11-09-2043_pre_ATROPOS_GMM_POSTERIORS2.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./11-09-2043/11-09-2043_pre_ATROPOS_GMM_POSTERIORS3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./11-09-2043/11-09-2043_pre_ATROPOS_GMM_POSTERIORS4.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./11-09-2043/11-09-2043_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./11-09-2043/11-09-2043_pre_ENTROPY_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./11-09-2043/11-09-2043_pre_ENTROPY_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./11-09-2043/11-09-2043_pre_MEAN_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./11-09-2043/11-09-2043_pre_MEAN_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./11-09-2043/11-09-2043_pre_NORMALIZED.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./11-09-2043/11-09-2043_pre_SIGMA_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./11-09-2043/11-09-2043_pre_SIGMA_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./11-09-2043/11-09-2043_pre_SKEWNESS_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./11-09-2043/11-09-2043_pre_SKEWNESS_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./11-09-2043/11-09-2043_pre__DIFFERENCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./12-09-2044/12-09-2044_NORMALIZED_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./12-09-2044/12-09-2044_pre_ATROPOS_GMM.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./12-09-2044/12-09-2044_pre_ATROPOS_GMM_ECCENTRICITY.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./12-09-2044/12-09-2044_pre_ATROPOS_GMM_ELONGATION.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./12-09-2044/12-09-2044_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./12-09-2044/12-09-2044_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./12-09-2044/12-09-2044_pre_ATROPOS_GMM_POSTERIORS1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./12-09-2044/12-09-2044_pre_ATROPOS_GMM_POSTERIORS2.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./12-09-2044/12-09-2044_pre_ATROPOS_GMM_POSTERIORS3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./12-09-2044/12-09-2044_pre_ATROPOS_GMM_POSTERIORS4.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./12-09-2044/12-09-2044_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./12-09-2044/12-09-2044_pre_ENTROPY_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./12-09-2044/12-09-2044_pre_ENTROPY_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./12-09-2044/12-09-2044_pre_MEAN_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./12-09-2044/12-09-2044_pre_MEAN_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./12-09-2044/12-09-2044_pre_NORMALIZED.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./12-09-2044/12-09-2044_pre_SIGMA_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./12-09-2044/12-09-2044_pre_SIGMA_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./12-09-2044/12-09-2044_pre_SKEWNESS_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./12-09-2044/12-09-2044_pre_SKEWNESS_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./12-09-2044/12-09-2044_pre__DIFFERENCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./13-09-2045/13-09-2045_NORMALIZED_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./13-09-2045/13-09-2045_pre_ATROPOS_GMM.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./13-09-2045/13-09-2045_pre_ATROPOS_GMM_ECCENTRICITY.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./13-09-2045/13-09-2045_pre_ATROPOS_GMM_ELONGATION.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./13-09-2045/13-09-2045_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./13-09-2045/13-09-2045_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./13-09-2045/13-09-2045_pre_ATROPOS_GMM_POSTERIORS1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./13-09-2045/13-09-2045_pre_ATROPOS_GMM_POSTERIORS2.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./13-09-2045/13-09-2045_pre_ATROPOS_GMM_POSTERIORS3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./13-09-2045/13-09-2045_pre_ATROPOS_GMM_POSTERIORS4.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./13-09-2045/13-09-2045_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./13-09-2045/13-09-2045_pre_ENTROPY_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./13-09-2045/13-09-2045_pre_ENTROPY_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./13-09-2045/13-09-2045_pre_MEAN_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./13-09-2045/13-09-2045_pre_MEAN_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./13-09-2045/13-09-2045_pre_NORMALIZED.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./13-09-2045/13-09-2045_pre_SIGMA_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./13-09-2045/13-09-2045_pre_SIGMA_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./13-09-2045/13-09-2045_pre_SKEWNESS_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./13-09-2045/13-09-2045_pre_SKEWNESS_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./13-09-2045/13-09-2045_pre__DIFFERENCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./14-09-2050/14-09-2050_NORMALIZED_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./14-09-2050/14-09-2050_pre_ATROPOS_GMM.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./14-09-2050/14-09-2050_pre_ATROPOS_GMM_ECCENTRICITY.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./14-09-2050/14-09-2050_pre_ATROPOS_GMM_ELONGATION.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./14-09-2050/14-09-2050_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./14-09-2050/14-09-2050_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./14-09-2050/14-09-2050_pre_ATROPOS_GMM_POSTERIORS1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./14-09-2050/14-09-2050_pre_ATROPOS_GMM_POSTERIORS2.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./14-09-2050/14-09-2050_pre_ATROPOS_GMM_POSTERIORS3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./14-09-2050/14-09-2050_pre_ATROPOS_GMM_POSTERIORS4.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./14-09-2050/14-09-2050_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./14-09-2050/14-09-2050_pre_ENTROPY_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./14-09-2050/14-09-2050_pre_ENTROPY_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./14-09-2050/14-09-2050_pre_MEAN_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./14-09-2050/14-09-2050_pre_MEAN_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./14-09-2050/14-09-2050_pre_NORMALIZED.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./14-09-2050/14-09-2050_pre_SIGMA_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./14-09-2050/14-09-2050_pre_SIGMA_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./14-09-2050/14-09-2050_pre_SKEWNESS_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./14-09-2050/14-09-2050_pre_SKEWNESS_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./14-09-2050/14-09-2050_pre__DIFFERENCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./15-09-2051/15-09-2051_NORMALIZED_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./15-09-2051/15-09-2051_pre_ATROPOS_GMM.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./15-09-2051/15-09-2051_pre_ATROPOS_GMM_ECCENTRICITY.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./15-09-2051/15-09-2051_pre_ATROPOS_GMM_ELONGATION.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./15-09-2051/15-09-2051_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./15-09-2051/15-09-2051_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./15-09-2051/15-09-2051_pre_ATROPOS_GMM_POSTERIORS1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./15-09-2051/15-09-2051_pre_ATROPOS_GMM_POSTERIORS2.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./15-09-2051/15-09-2051_pre_ATROPOS_GMM_POSTERIORS3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./15-09-2051/15-09-2051_pre_ATROPOS_GMM_POSTERIORS4.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./15-09-2051/15-09-2051_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./15-09-2051/15-09-2051_pre_ENTROPY_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./15-09-2051/15-09-2051_pre_ENTROPY_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./15-09-2051/15-09-2051_pre_MEAN_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./15-09-2051/15-09-2051_pre_MEAN_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./15-09-2051/15-09-2051_pre_NORMALIZED.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./15-09-2051/15-09-2051_pre_SIGMA_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./15-09-2051/15-09-2051_pre_SIGMA_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./15-09-2051/15-09-2051_pre_SKEWNESS_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./15-09-2051/15-09-2051_pre_SKEWNESS_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./15-09-2051/15-09-2051_pre__DIFFERENCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./16-09-2053/16-09-2053_NORMALIZED_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./16-09-2053/16-09-2053_pre_ATROPOS_GMM.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./16-09-2053/16-09-2053_pre_ATROPOS_GMM_ECCENTRICITY.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./16-09-2053/16-09-2053_pre_ATROPOS_GMM_ELONGATION.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./16-09-2053/16-09-2053_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./16-09-2053/16-09-2053_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./16-09-2053/16-09-2053_pre_ATROPOS_GMM_POSTERIORS1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./16-09-2053/16-09-2053_pre_ATROPOS_GMM_POSTERIORS2.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./16-09-2053/16-09-2053_pre_ATROPOS_GMM_POSTERIORS3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./16-09-2053/16-09-2053_pre_ATROPOS_GMM_POSTERIORS4.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./16-09-2053/16-09-2053_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./16-09-2053/16-09-2053_pre_ENTROPY_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./16-09-2053/16-09-2053_pre_ENTROPY_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./16-09-2053/16-09-2053_pre_MEAN_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./16-09-2053/16-09-2053_pre_MEAN_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./16-09-2053/16-09-2053_pre_NORMALIZED.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./16-09-2053/16-09-2053_pre_SIGMA_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./16-09-2053/16-09-2053_pre_SIGMA_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./16-09-2053/16-09-2053_pre_SKEWNESS_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./16-09-2053/16-09-2053_pre_SKEWNESS_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./16-09-2053/16-09-2053_pre__DIFFERENCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./17-09-2054/17-09-2054_NORMALIZED_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./17-09-2054/17-09-2054_pre_ATROPOS_GMM.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./17-09-2054/17-09-2054_pre_ATROPOS_GMM_ECCENTRICITY.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./17-09-2054/17-09-2054_pre_ATROPOS_GMM_ELONGATION.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./17-09-2054/17-09-2054_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./17-09-2054/17-09-2054_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./17-09-2054/17-09-2054_pre_ATROPOS_GMM_POSTERIORS1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./17-09-2054/17-09-2054_pre_ATROPOS_GMM_POSTERIORS2.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./17-09-2054/17-09-2054_pre_ATROPOS_GMM_POSTERIORS3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./17-09-2054/17-09-2054_pre_ATROPOS_GMM_POSTERIORS4.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./17-09-2054/17-09-2054_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./17-09-2054/17-09-2054_pre_ENTROPY_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./17-09-2054/17-09-2054_pre_ENTROPY_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./17-09-2054/17-09-2054_pre_MEAN_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./17-09-2054/17-09-2054_pre_MEAN_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./17-09-2054/17-09-2054_pre_NORMALIZED.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./17-09-2054/17-09-2054_pre_SIGMA_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./17-09-2054/17-09-2054_pre_SIGMA_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./17-09-2054/17-09-2054_pre_SKEWNESS_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./17-09-2054/17-09-2054_pre_SKEWNESS_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./17-09-2054/17-09-2054_pre__DIFFERENCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./18-09-2055/18-09-2055_NORMALIZED_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./18-09-2055/18-09-2055_pre_ATROPOS_GMM.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./18-09-2055/18-09-2055_pre_ATROPOS_GMM_ECCENTRICITY.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./18-09-2055/18-09-2055_pre_ATROPOS_GMM_ELONGATION.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./18-09-2055/18-09-2055_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./18-09-2055/18-09-2055_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./18-09-2055/18-09-2055_pre_ATROPOS_GMM_POSTERIORS1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./18-09-2055/18-09-2055_pre_ATROPOS_GMM_POSTERIORS2.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./18-09-2055/18-09-2055_pre_ATROPOS_GMM_POSTERIORS3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./18-09-2055/18-09-2055_pre_ATROPOS_GMM_POSTERIORS4.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./18-09-2055/18-09-2055_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./18-09-2055/18-09-2055_pre_ENTROPY_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./18-09-2055/18-09-2055_pre_ENTROPY_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./18-09-2055/18-09-2055_pre_MEAN_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./18-09-2055/18-09-2055_pre_MEAN_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./18-09-2055/18-09-2055_pre_NORMALIZED.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./18-09-2055/18-09-2055_pre_SIGMA_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./18-09-2055/18-09-2055_pre_SIGMA_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./18-09-2055/18-09-2055_pre_SKEWNESS_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./18-09-2055/18-09-2055_pre_SKEWNESS_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./18-09-2055/18-09-2055_pre__DIFFERENCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./19-13-0720/19-13-0720_NORMALIZED_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./19-13-0720/19-13-0720_pre_ATROPOS_GMM.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./19-13-0720/19-13-0720_pre_ATROPOS_GMM_ECCENTRICITY.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./19-13-0720/19-13-0720_pre_ATROPOS_GMM_ELONGATION.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./19-13-0720/19-13-0720_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./19-13-0720/19-13-0720_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./19-13-0720/19-13-0720_pre_ATROPOS_GMM_POSTERIORS1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./19-13-0720/19-13-0720_pre_ATROPOS_GMM_POSTERIORS2.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./19-13-0720/19-13-0720_pre_ATROPOS_GMM_POSTERIORS3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./19-13-0720/19-13-0720_pre_ATROPOS_GMM_POSTERIORS4.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./19-13-0720/19-13-0720_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./19-13-0720/19-13-0720_pre_ENTROPY_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./19-13-0720/19-13-0720_pre_ENTROPY_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./19-13-0720/19-13-0720_pre_MEAN_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./19-13-0720/19-13-0720_pre_MEAN_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./19-13-0720/19-13-0720_pre_NORMALIZED.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./19-13-0720/19-13-0720_pre_SIGMA_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./19-13-0720/19-13-0720_pre_SIGMA_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./19-13-0720/19-13-0720_pre_SKEWNESS_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./19-13-0720/19-13-0720_pre_SKEWNESS_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./19-13-0720/19-13-0720_pre__DIFFERENCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./20-13-0724/20-13-0724_NORMALIZED_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./20-13-0724/20-13-0724_pre_ATROPOS_GMM.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./20-13-0724/20-13-0724_pre_ATROPOS_GMM_ECCENTRICITY.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./20-13-0724/20-13-0724_pre_ATROPOS_GMM_ELONGATION.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./20-13-0724/20-13-0724_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./20-13-0724/20-13-0724_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./20-13-0724/20-13-0724_pre_ATROPOS_GMM_POSTERIORS1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./20-13-0724/20-13-0724_pre_ATROPOS_GMM_POSTERIORS2.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./20-13-0724/20-13-0724_pre_ATROPOS_GMM_POSTERIORS3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./20-13-0724/20-13-0724_pre_ATROPOS_GMM_POSTERIORS4.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./20-13-0724/20-13-0724_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./20-13-0724/20-13-0724_pre_ENTROPY_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./20-13-0724/20-13-0724_pre_ENTROPY_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./20-13-0724/20-13-0724_pre_MEAN_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./20-13-0724/20-13-0724_pre_MEAN_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./20-13-0724/20-13-0724_pre_NORMALIZED.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./20-13-0724/20-13-0724_pre_SIGMA_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./20-13-0724/20-13-0724_pre_SIGMA_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./20-13-0724/20-13-0724_pre_SKEWNESS_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./20-13-0724/20-13-0724_pre_SKEWNESS_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./20-13-0724/20-13-0724_pre__DIFFERENCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./21-13-0761/21-13-0761_NORMALIZED_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./21-13-0761/21-13-0761_pre_ATROPOS_GMM.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./21-13-0761/21-13-0761_pre_ATROPOS_GMM_ECCENTRICITY.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./21-13-0761/21-13-0761_pre_ATROPOS_GMM_ELONGATION.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./21-13-0761/21-13-0761_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./21-13-0761/21-13-0761_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./21-13-0761/21-13-0761_pre_ATROPOS_GMM_POSTERIORS1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./21-13-0761/21-13-0761_pre_ATROPOS_GMM_POSTERIORS2.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./21-13-0761/21-13-0761_pre_ATROPOS_GMM_POSTERIORS3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./21-13-0761/21-13-0761_pre_ATROPOS_GMM_POSTERIORS4.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./21-13-0761/21-13-0761_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./21-13-0761/21-13-0761_pre_ENTROPY_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./21-13-0761/21-13-0761_pre_ENTROPY_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./21-13-0761/21-13-0761_pre_MEAN_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./21-13-0761/21-13-0761_pre_MEAN_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./21-13-0761/21-13-0761_pre_NORMALIZED.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./21-13-0761/21-13-0761_pre_SIGMA_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./21-13-0761/21-13-0761_pre_SIGMA_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./21-13-0761/21-13-0761_pre_SKEWNESS_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./21-13-0761/21-13-0761_pre_SKEWNESS_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./21-13-0761/21-13-0761_pre__DIFFERENCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./22-13-0762/22-13-0762_NORMALIZED_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./22-13-0762/22-13-0762_pre_ATROPOS_GMM.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./22-13-0762/22-13-0762_pre_ATROPOS_GMM_ECCENTRICITY.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./22-13-0762/22-13-0762_pre_ATROPOS_GMM_ELONGATION.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./22-13-0762/22-13-0762_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./22-13-0762/22-13-0762_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./22-13-0762/22-13-0762_pre_ATROPOS_GMM_POSTERIORS1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./22-13-0762/22-13-0762_pre_ATROPOS_GMM_POSTERIORS2.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./22-13-0762/22-13-0762_pre_ATROPOS_GMM_POSTERIORS3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./22-13-0762/22-13-0762_pre_ATROPOS_GMM_POSTERIORS4.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./22-13-0762/22-13-0762_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./22-13-0762/22-13-0762_pre_ENTROPY_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./22-13-0762/22-13-0762_pre_ENTROPY_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./22-13-0762/22-13-0762_pre_MEAN_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./22-13-0762/22-13-0762_pre_MEAN_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./22-13-0762/22-13-0762_pre_NORMALIZED.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./22-13-0762/22-13-0762_pre_SIGMA_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./22-13-0762/22-13-0762_pre_SIGMA_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./22-13-0762/22-13-0762_pre_SKEWNESS_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./22-13-0762/22-13-0762_pre_SKEWNESS_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./22-13-0762/22-13-0762_pre__DIFFERENCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./23-13-0768/23-13-0768_NORMALIZED_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./23-13-0768/23-13-0768_pre_ATROPOS_GMM.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./23-13-0768/23-13-0768_pre_ATROPOS_GMM_ECCENTRICITY.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./23-13-0768/23-13-0768_pre_ATROPOS_GMM_ELONGATION.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./23-13-0768/23-13-0768_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./23-13-0768/23-13-0768_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./23-13-0768/23-13-0768_pre_ATROPOS_GMM_POSTERIORS1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./23-13-0768/23-13-0768_pre_ATROPOS_GMM_POSTERIORS2.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./23-13-0768/23-13-0768_pre_ATROPOS_GMM_POSTERIORS3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./23-13-0768/23-13-0768_pre_ATROPOS_GMM_POSTERIORS4.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./23-13-0768/23-13-0768_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./23-13-0768/23-13-0768_pre_ENTROPY_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./23-13-0768/23-13-0768_pre_ENTROPY_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./23-13-0768/23-13-0768_pre_MEAN_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./23-13-0768/23-13-0768_pre_MEAN_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./23-13-0768/23-13-0768_pre_NORMALIZED.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./23-13-0768/23-13-0768_pre_SIGMA_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./23-13-0768/23-13-0768_pre_SIGMA_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./23-13-0768/23-13-0768_pre_SKEWNESS_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./23-13-0768/23-13-0768_pre_SKEWNESS_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./23-13-0768/23-13-0768_pre__DIFFERENCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./24-13-0793/24-13-0793_NORMALIZED_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./24-13-0793/24-13-0793_pre_ATROPOS_GMM.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./24-13-0793/24-13-0793_pre_ATROPOS_GMM_ECCENTRICITY.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./24-13-0793/24-13-0793_pre_ATROPOS_GMM_ELONGATION.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./24-13-0793/24-13-0793_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./24-13-0793/24-13-0793_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./24-13-0793/24-13-0793_pre_ATROPOS_GMM_POSTERIORS1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./24-13-0793/24-13-0793_pre_ATROPOS_GMM_POSTERIORS2.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./24-13-0793/24-13-0793_pre_ATROPOS_GMM_POSTERIORS3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./24-13-0793/24-13-0793_pre_ATROPOS_GMM_POSTERIORS4.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./24-13-0793/24-13-0793_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./24-13-0793/24-13-0793_pre_ENTROPY_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./24-13-0793/24-13-0793_pre_ENTROPY_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./24-13-0793/24-13-0793_pre_MEAN_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./24-13-0793/24-13-0793_pre_MEAN_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./24-13-0793/24-13-0793_pre_NORMALIZED.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./24-13-0793/24-13-0793_pre_SIGMA_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./24-13-0793/24-13-0793_pre_SIGMA_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./24-13-0793/24-13-0793_pre_SKEWNESS_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./24-13-0793/24-13-0793_pre_SKEWNESS_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./24-13-0793/24-13-0793_pre__DIFFERENCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./25-13-0794/25-13-0794_NORMALIZED_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./25-13-0794/25-13-0794_pre_ATROPOS_GMM.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./25-13-0794/25-13-0794_pre_ATROPOS_GMM_ECCENTRICITY.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./25-13-0794/25-13-0794_pre_ATROPOS_GMM_ELONGATION.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./25-13-0794/25-13-0794_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./25-13-0794/25-13-0794_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./25-13-0794/25-13-0794_pre_ATROPOS_GMM_POSTERIORS1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./25-13-0794/25-13-0794_pre_ATROPOS_GMM_POSTERIORS2.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./25-13-0794/25-13-0794_pre_ATROPOS_GMM_POSTERIORS3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./25-13-0794/25-13-0794_pre_ATROPOS_GMM_POSTERIORS4.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./25-13-0794/25-13-0794_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./25-13-0794/25-13-0794_pre_ENTROPY_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./25-13-0794/25-13-0794_pre_ENTROPY_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./25-13-0794/25-13-0794_pre_MEAN_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./25-13-0794/25-13-0794_pre_MEAN_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./25-13-0794/25-13-0794_pre_NORMALIZED.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./25-13-0794/25-13-0794_pre_SIGMA_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./25-13-0794/25-13-0794_pre_SIGMA_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./25-13-0794/25-13-0794_pre_SKEWNESS_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./25-13-0794/25-13-0794_pre_SKEWNESS_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./25-13-0794/25-13-0794_pre__DIFFERENCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./26-13-0795/26-13-0795_NORMALIZED_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./26-13-0795/26-13-0795_pre_ATROPOS_GMM.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./26-13-0795/26-13-0795_pre_ATROPOS_GMM_ECCENTRICITY.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./26-13-0795/26-13-0795_pre_ATROPOS_GMM_ELONGATION.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./26-13-0795/26-13-0795_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./26-13-0795/26-13-0795_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./26-13-0795/26-13-0795_pre_ATROPOS_GMM_POSTERIORS1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./26-13-0795/26-13-0795_pre_ATROPOS_GMM_POSTERIORS2.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./26-13-0795/26-13-0795_pre_ATROPOS_GMM_POSTERIORS3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./26-13-0795/26-13-0795_pre_ATROPOS_GMM_POSTERIORS4.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./26-13-0795/26-13-0795_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./26-13-0795/26-13-0795_pre_ENTROPY_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./26-13-0795/26-13-0795_pre_ENTROPY_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./26-13-0795/26-13-0795_pre_MEAN_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./26-13-0795/26-13-0795_pre_MEAN_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./26-13-0795/26-13-0795_pre_NORMALIZED.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./26-13-0795/26-13-0795_pre_SIGMA_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./26-13-0795/26-13-0795_pre_SIGMA_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./26-13-0795/26-13-0795_pre_SKEWNESS_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./26-13-0795/26-13-0795_pre_SKEWNESS_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./26-13-0795/26-13-0795_pre__DIFFERENCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./27-13-0797/27-13-0797_NORMALIZED_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./27-13-0797/27-13-0797_pre_ATROPOS_GMM.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./27-13-0797/27-13-0797_pre_ATROPOS_GMM_ECCENTRICITY.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./27-13-0797/27-13-0797_pre_ATROPOS_GMM_ELONGATION.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./27-13-0797/27-13-0797_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./27-13-0797/27-13-0797_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./27-13-0797/27-13-0797_pre_ATROPOS_GMM_POSTERIORS1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./27-13-0797/27-13-0797_pre_ATROPOS_GMM_POSTERIORS2.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./27-13-0797/27-13-0797_pre_ATROPOS_GMM_POSTERIORS3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./27-13-0797/27-13-0797_pre_ATROPOS_GMM_POSTERIORS4.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./27-13-0797/27-13-0797_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./27-13-0797/27-13-0797_pre_ENTROPY_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./27-13-0797/27-13-0797_pre_ENTROPY_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./27-13-0797/27-13-0797_pre_MEAN_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./27-13-0797/27-13-0797_pre_MEAN_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./27-13-0797/27-13-0797_pre_NORMALIZED.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./27-13-0797/27-13-0797_pre_SIGMA_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./27-13-0797/27-13-0797_pre_SIGMA_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./27-13-0797/27-13-0797_pre_SKEWNESS_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./27-13-0797/27-13-0797_pre_SKEWNESS_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./27-13-0797/27-13-0797_pre__DIFFERENCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./28-13-0799/28-13-0799_NORMALIZED_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./28-13-0799/28-13-0799_pre_ATROPOS_GMM.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./28-13-0799/28-13-0799_pre_ATROPOS_GMM_ECCENTRICITY.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./28-13-0799/28-13-0799_pre_ATROPOS_GMM_ELONGATION.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./28-13-0799/28-13-0799_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./28-13-0799/28-13-0799_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./28-13-0799/28-13-0799_pre_ATROPOS_GMM_POSTERIORS1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./28-13-0799/28-13-0799_pre_ATROPOS_GMM_POSTERIORS2.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./28-13-0799/28-13-0799_pre_ATROPOS_GMM_POSTERIORS3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./28-13-0799/28-13-0799_pre_ATROPOS_GMM_POSTERIORS4.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./28-13-0799/28-13-0799_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./28-13-0799/28-13-0799_pre_ENTROPY_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./28-13-0799/28-13-0799_pre_ENTROPY_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./28-13-0799/28-13-0799_pre_MEAN_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./28-13-0799/28-13-0799_pre_MEAN_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./28-13-0799/28-13-0799_pre_NORMALIZED.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./28-13-0799/28-13-0799_pre_SIGMA_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./28-13-0799/28-13-0799_pre_SIGMA_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./28-13-0799/28-13-0799_pre_SKEWNESS_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./28-13-0799/28-13-0799_pre_SKEWNESS_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./28-13-0799/28-13-0799_pre__DIFFERENCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./29-13-0800/29-13-0800_NORMALIZED_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./29-13-0800/29-13-0800_pre_ATROPOS_GMM.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./29-13-0800/29-13-0800_pre_ATROPOS_GMM_ECCENTRICITY.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./29-13-0800/29-13-0800_pre_ATROPOS_GMM_ELONGATION.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./29-13-0800/29-13-0800_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./29-13-0800/29-13-0800_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./29-13-0800/29-13-0800_pre_ATROPOS_GMM_POSTERIORS1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./29-13-0800/29-13-0800_pre_ATROPOS_GMM_POSTERIORS2.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./29-13-0800/29-13-0800_pre_ATROPOS_GMM_POSTERIORS3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./29-13-0800/29-13-0800_pre_ATROPOS_GMM_POSTERIORS4.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./29-13-0800/29-13-0800_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./29-13-0800/29-13-0800_pre_ENTROPY_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./29-13-0800/29-13-0800_pre_ENTROPY_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./29-13-0800/29-13-0800_pre_MEAN_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./29-13-0800/29-13-0800_pre_MEAN_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./29-13-0800/29-13-0800_pre_NORMALIZED.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./29-13-0800/29-13-0800_pre_SIGMA_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./29-13-0800/29-13-0800_pre_SIGMA_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./29-13-0800/29-13-0800_pre_SKEWNESS_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./29-13-0800/29-13-0800_pre_SKEWNESS_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./29-13-0800/29-13-0800_pre__DIFFERENCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./30-13-0802/30-13-0802_NORMALIZED_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./30-13-0802/30-13-0802_pre_ATROPOS_GMM.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./30-13-0802/30-13-0802_pre_ATROPOS_GMM_ECCENTRICITY.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./30-13-0802/30-13-0802_pre_ATROPOS_GMM_ELONGATION.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./30-13-0802/30-13-0802_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./30-13-0802/30-13-0802_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./30-13-0802/30-13-0802_pre_ATROPOS_GMM_POSTERIORS1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./30-13-0802/30-13-0802_pre_ATROPOS_GMM_POSTERIORS2.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./30-13-0802/30-13-0802_pre_ATROPOS_GMM_POSTERIORS3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./30-13-0802/30-13-0802_pre_ATROPOS_GMM_POSTERIORS4.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./30-13-0802/30-13-0802_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./30-13-0802/30-13-0802_pre_ENTROPY_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./30-13-0802/30-13-0802_pre_ENTROPY_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./30-13-0802/30-13-0802_pre_MEAN_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./30-13-0802/30-13-0802_pre_MEAN_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./30-13-0802/30-13-0802_pre_NORMALIZED.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./30-13-0802/30-13-0802_pre_SIGMA_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./30-13-0802/30-13-0802_pre_SIGMA_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./30-13-0802/30-13-0802_pre_SKEWNESS_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./30-13-0802/30-13-0802_pre_SKEWNESS_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./30-13-0802/30-13-0802_pre__DIFFERENCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./31-13-0807/31-13-0807_NORMALIZED_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./31-13-0807/31-13-0807_pre_ATROPOS_GMM.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./31-13-0807/31-13-0807_pre_ATROPOS_GMM_ECCENTRICITY.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./31-13-0807/31-13-0807_pre_ATROPOS_GMM_ELONGATION.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./31-13-0807/31-13-0807_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./31-13-0807/31-13-0807_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./31-13-0807/31-13-0807_pre_ATROPOS_GMM_POSTERIORS1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./31-13-0807/31-13-0807_pre_ATROPOS_GMM_POSTERIORS2.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./31-13-0807/31-13-0807_pre_ATROPOS_GMM_POSTERIORS3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./31-13-0807/31-13-0807_pre_ATROPOS_GMM_POSTERIORS4.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./31-13-0807/31-13-0807_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./31-13-0807/31-13-0807_pre_ENTROPY_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./31-13-0807/31-13-0807_pre_ENTROPY_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./31-13-0807/31-13-0807_pre_MEAN_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./31-13-0807/31-13-0807_pre_MEAN_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./31-13-0807/31-13-0807_pre_NORMALIZED.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./31-13-0807/31-13-0807_pre_SIGMA_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./31-13-0807/31-13-0807_pre_SIGMA_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./31-13-0807/31-13-0807_pre_SKEWNESS_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./31-13-0807/31-13-0807_pre_SKEWNESS_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./31-13-0807/31-13-0807_pre__DIFFERENCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./32-13-0883/32-13-0883_NORMALIZED_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./32-13-0883/32-13-0883_pre_ATROPOS_GMM.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./32-13-0883/32-13-0883_pre_ATROPOS_GMM_ECCENTRICITY.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./32-13-0883/32-13-0883_pre_ATROPOS_GMM_ELONGATION.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./32-13-0883/32-13-0883_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./32-13-0883/32-13-0883_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./32-13-0883/32-13-0883_pre_ATROPOS_GMM_POSTERIORS1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./32-13-0883/32-13-0883_pre_ATROPOS_GMM_POSTERIORS2.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./32-13-0883/32-13-0883_pre_ATROPOS_GMM_POSTERIORS3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./32-13-0883/32-13-0883_pre_ATROPOS_GMM_POSTERIORS4.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./32-13-0883/32-13-0883_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./32-13-0883/32-13-0883_pre_ENTROPY_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./32-13-0883/32-13-0883_pre_ENTROPY_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./32-13-0883/32-13-0883_pre_MEAN_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./32-13-0883/32-13-0883_pre_MEAN_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./32-13-0883/32-13-0883_pre_NORMALIZED.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./32-13-0883/32-13-0883_pre_SIGMA_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./32-13-0883/32-13-0883_pre_SIGMA_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./32-13-0883/32-13-0883_pre_SKEWNESS_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./32-13-0883/32-13-0883_pre_SKEWNESS_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./32-13-0883/32-13-0883_pre__DIFFERENCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./33-13-0904/33-13-0904_NORMALIZED_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./33-13-0904/33-13-0904_pre_ATROPOS_GMM.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./33-13-0904/33-13-0904_pre_ATROPOS_GMM_ECCENTRICITY.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./33-13-0904/33-13-0904_pre_ATROPOS_GMM_ELONGATION.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./33-13-0904/33-13-0904_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./33-13-0904/33-13-0904_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./33-13-0904/33-13-0904_pre_ATROPOS_GMM_POSTERIORS1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./33-13-0904/33-13-0904_pre_ATROPOS_GMM_POSTERIORS2.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./33-13-0904/33-13-0904_pre_ATROPOS_GMM_POSTERIORS3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./33-13-0904/33-13-0904_pre_ATROPOS_GMM_POSTERIORS4.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./33-13-0904/33-13-0904_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./33-13-0904/33-13-0904_pre_ENTROPY_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./33-13-0904/33-13-0904_pre_ENTROPY_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./33-13-0904/33-13-0904_pre_MEAN_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./33-13-0904/33-13-0904_pre_MEAN_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./33-13-0904/33-13-0904_pre_NORMALIZED.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./33-13-0904/33-13-0904_pre_SIGMA_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./33-13-0904/33-13-0904_pre_SIGMA_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./33-13-0904/33-13-0904_pre_SKEWNESS_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./33-13-0904/33-13-0904_pre_SKEWNESS_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./33-13-0904/33-13-0904_pre__DIFFERENCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./34-13-0910/34-13-0910_NORMALIZED_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./34-13-0910/34-13-0910_pre_ATROPOS_GMM.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./34-13-0910/34-13-0910_pre_ATROPOS_GMM_ECCENTRICITY.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./34-13-0910/34-13-0910_pre_ATROPOS_GMM_ELONGATION.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./34-13-0910/34-13-0910_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./34-13-0910/34-13-0910_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./34-13-0910/34-13-0910_pre_ATROPOS_GMM_POSTERIORS1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./34-13-0910/34-13-0910_pre_ATROPOS_GMM_POSTERIORS2.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./34-13-0910/34-13-0910_pre_ATROPOS_GMM_POSTERIORS3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./34-13-0910/34-13-0910_pre_ATROPOS_GMM_POSTERIORS4.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./34-13-0910/34-13-0910_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./34-13-0910/34-13-0910_pre_ENTROPY_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./34-13-0910/34-13-0910_pre_ENTROPY_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./34-13-0910/34-13-0910_pre_MEAN_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./34-13-0910/34-13-0910_pre_MEAN_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./34-13-0910/34-13-0910_pre_NORMALIZED.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./34-13-0910/34-13-0910_pre_SIGMA_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./34-13-0910/34-13-0910_pre_SIGMA_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./34-13-0910/34-13-0910_pre_SKEWNESS_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./34-13-0910/34-13-0910_pre_SKEWNESS_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./34-13-0910/34-13-0910_pre__DIFFERENCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./35-13-0911/35-13-0911_NORMALIZED_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./35-13-0911/35-13-0911_pre_ATROPOS_GMM.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./35-13-0911/35-13-0911_pre_ATROPOS_GMM_ECCENTRICITY.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./35-13-0911/35-13-0911_pre_ATROPOS_GMM_ELONGATION.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./35-13-0911/35-13-0911_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./35-13-0911/35-13-0911_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./35-13-0911/35-13-0911_pre_ATROPOS_GMM_POSTERIORS1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./35-13-0911/35-13-0911_pre_ATROPOS_GMM_POSTERIORS2.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./35-13-0911/35-13-0911_pre_ATROPOS_GMM_POSTERIORS3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./35-13-0911/35-13-0911_pre_ATROPOS_GMM_POSTERIORS4.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./35-13-0911/35-13-0911_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./35-13-0911/35-13-0911_pre_ENTROPY_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./35-13-0911/35-13-0911_pre_ENTROPY_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./35-13-0911/35-13-0911_pre_MEAN_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./35-13-0911/35-13-0911_pre_MEAN_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./35-13-0911/35-13-0911_pre_NORMALIZED.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./35-13-0911/35-13-0911_pre_SIGMA_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./35-13-0911/35-13-0911_pre_SIGMA_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./35-13-0911/35-13-0911_pre_SKEWNESS_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./35-13-0911/35-13-0911_pre_SKEWNESS_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./35-13-0911/35-13-0911_pre__DIFFERENCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./36-13-0916/36-13-0916_NORMALIZED_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./36-13-0916/36-13-0916_pre_ATROPOS_GMM.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./36-13-0916/36-13-0916_pre_ATROPOS_GMM_ECCENTRICITY.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./36-13-0916/36-13-0916_pre_ATROPOS_GMM_ELONGATION.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./36-13-0916/36-13-0916_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./36-13-0916/36-13-0916_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./36-13-0916/36-13-0916_pre_ATROPOS_GMM_POSTERIORS1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./36-13-0916/36-13-0916_pre_ATROPOS_GMM_POSTERIORS2.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./36-13-0916/36-13-0916_pre_ATROPOS_GMM_POSTERIORS3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./36-13-0916/36-13-0916_pre_ATROPOS_GMM_POSTERIORS4.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./36-13-0916/36-13-0916_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./36-13-0916/36-13-0916_pre_ENTROPY_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./36-13-0916/36-13-0916_pre_ENTROPY_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./36-13-0916/36-13-0916_pre_MEAN_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./36-13-0916/36-13-0916_pre_MEAN_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./36-13-0916/36-13-0916_pre_NORMALIZED.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./36-13-0916/36-13-0916_pre_SIGMA_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./36-13-0916/36-13-0916_pre_SIGMA_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./36-13-0916/36-13-0916_pre_SKEWNESS_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./36-13-0916/36-13-0916_pre_SKEWNESS_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./36-13-0916/36-13-0916_pre__DIFFERENCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./37-13-0920/37-13-0920_NORMALIZED_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./37-13-0920/37-13-0920_pre_ATROPOS_GMM.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./37-13-0920/37-13-0920_pre_ATROPOS_GMM_ECCENTRICITY.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./37-13-0920/37-13-0920_pre_ATROPOS_GMM_ELONGATION.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./37-13-0920/37-13-0920_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./37-13-0920/37-13-0920_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./37-13-0920/37-13-0920_pre_ATROPOS_GMM_POSTERIORS1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./37-13-0920/37-13-0920_pre_ATROPOS_GMM_POSTERIORS2.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./37-13-0920/37-13-0920_pre_ATROPOS_GMM_POSTERIORS3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./37-13-0920/37-13-0920_pre_ATROPOS_GMM_POSTERIORS4.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./37-13-0920/37-13-0920_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./37-13-0920/37-13-0920_pre_ENTROPY_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./37-13-0920/37-13-0920_pre_ENTROPY_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./37-13-0920/37-13-0920_pre_MEAN_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./37-13-0920/37-13-0920_pre_MEAN_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./37-13-0920/37-13-0920_pre_NORMALIZED.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./37-13-0920/37-13-0920_pre_SIGMA_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./37-13-0920/37-13-0920_pre_SIGMA_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./37-13-0920/37-13-0920_pre_SKEWNESS_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./37-13-0920/37-13-0920_pre_SKEWNESS_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./37-13-0920/37-13-0920_pre__DIFFERENCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./38-13-0921/38-13-0921_NORMALIZED_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./38-13-0921/38-13-0921_pre_ATROPOS_GMM.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./38-13-0921/38-13-0921_pre_ATROPOS_GMM_ECCENTRICITY.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./38-13-0921/38-13-0921_pre_ATROPOS_GMM_ELONGATION.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./38-13-0921/38-13-0921_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./38-13-0921/38-13-0921_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./38-13-0921/38-13-0921_pre_ATROPOS_GMM_POSTERIORS1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./38-13-0921/38-13-0921_pre_ATROPOS_GMM_POSTERIORS2.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./38-13-0921/38-13-0921_pre_ATROPOS_GMM_POSTERIORS3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./38-13-0921/38-13-0921_pre_ATROPOS_GMM_POSTERIORS4.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./38-13-0921/38-13-0921_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./38-13-0921/38-13-0921_pre_ENTROPY_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./38-13-0921/38-13-0921_pre_ENTROPY_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./38-13-0921/38-13-0921_pre_MEAN_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./38-13-0921/38-13-0921_pre_MEAN_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./38-13-0921/38-13-0921_pre_NORMALIZED.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./38-13-0921/38-13-0921_pre_SIGMA_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./38-13-0921/38-13-0921_pre_SIGMA_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./38-13-0921/38-13-0921_pre_SKEWNESS_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./38-13-0921/38-13-0921_pre_SKEWNESS_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./38-13-0921/38-13-0921_pre__DIFFERENCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./39-13-0924/39-13-0924_NORMALIZED_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./39-13-0924/39-13-0924_pre_ATROPOS_GMM.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./39-13-0924/39-13-0924_pre_ATROPOS_GMM_ECCENTRICITY.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./39-13-0924/39-13-0924_pre_ATROPOS_GMM_ELONGATION.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./39-13-0924/39-13-0924_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./39-13-0924/39-13-0924_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./39-13-0924/39-13-0924_pre_ATROPOS_GMM_POSTERIORS1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./39-13-0924/39-13-0924_pre_ATROPOS_GMM_POSTERIORS2.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./39-13-0924/39-13-0924_pre_ATROPOS_GMM_POSTERIORS3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./39-13-0924/39-13-0924_pre_ATROPOS_GMM_POSTERIORS4.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./39-13-0924/39-13-0924_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./39-13-0924/39-13-0924_pre_ENTROPY_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./39-13-0924/39-13-0924_pre_ENTROPY_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./39-13-0924/39-13-0924_pre_MEAN_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./39-13-0924/39-13-0924_pre_MEAN_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./39-13-0924/39-13-0924_pre_NORMALIZED.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./39-13-0924/39-13-0924_pre_SIGMA_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./39-13-0924/39-13-0924_pre_SIGMA_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./39-13-0924/39-13-0924_pre_SKEWNESS_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./39-13-0924/39-13-0924_pre_SKEWNESS_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./39-13-0924/39-13-0924_pre__DIFFERENCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./40-13-1405/40-13-1405_NORMALIZED_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./40-13-1405/40-13-1405_pre_ATROPOS_GMM.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./40-13-1405/40-13-1405_pre_ATROPOS_GMM_ECCENTRICITY.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./40-13-1405/40-13-1405_pre_ATROPOS_GMM_ELONGATION.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./40-13-1405/40-13-1405_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./40-13-1405/40-13-1405_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./40-13-1405/40-13-1405_pre_ATROPOS_GMM_POSTERIORS1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./40-13-1405/40-13-1405_pre_ATROPOS_GMM_POSTERIORS2.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./40-13-1405/40-13-1405_pre_ATROPOS_GMM_POSTERIORS3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./40-13-1405/40-13-1405_pre_ATROPOS_GMM_POSTERIORS4.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./40-13-1405/40-13-1405_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./40-13-1405/40-13-1405_pre_ENTROPY_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./40-13-1405/40-13-1405_pre_ENTROPY_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./40-13-1405/40-13-1405_pre_MEAN_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./40-13-1405/40-13-1405_pre_MEAN_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./40-13-1405/40-13-1405_pre_NORMALIZED.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./40-13-1405/40-13-1405_pre_SIGMA_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./40-13-1405/40-13-1405_pre_SIGMA_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./40-13-1405/40-13-1405_pre_SKEWNESS_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./40-13-1405/40-13-1405_pre_SKEWNESS_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./40-13-1405/40-13-1405_pre__DIFFERENCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./41-13-1408/41-13-1408_NORMALIZED_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./41-13-1408/41-13-1408_pre_ATROPOS_GMM.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./41-13-1408/41-13-1408_pre_ATROPOS_GMM_ECCENTRICITY.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./41-13-1408/41-13-1408_pre_ATROPOS_GMM_ELONGATION.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./41-13-1408/41-13-1408_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./41-13-1408/41-13-1408_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./41-13-1408/41-13-1408_pre_ATROPOS_GMM_POSTERIORS1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./41-13-1408/41-13-1408_pre_ATROPOS_GMM_POSTERIORS2.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./41-13-1408/41-13-1408_pre_ATROPOS_GMM_POSTERIORS3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./41-13-1408/41-13-1408_pre_ATROPOS_GMM_POSTERIORS4.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./41-13-1408/41-13-1408_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./41-13-1408/41-13-1408_pre_ENTROPY_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./41-13-1408/41-13-1408_pre_ENTROPY_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./41-13-1408/41-13-1408_pre_MEAN_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./41-13-1408/41-13-1408_pre_MEAN_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./41-13-1408/41-13-1408_pre_NORMALIZED.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./41-13-1408/41-13-1408_pre_SIGMA_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./41-13-1408/41-13-1408_pre_SIGMA_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./41-13-1408/41-13-1408_pre_SKEWNESS_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./41-13-1408/41-13-1408_pre_SKEWNESS_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./41-13-1408/41-13-1408_pre__DIFFERENCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./42-13-1411/42-13-1411_NORMALIZED_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./42-13-1411/42-13-1411_pre_ATROPOS_GMM.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./42-13-1411/42-13-1411_pre_ATROPOS_GMM_ECCENTRICITY.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./42-13-1411/42-13-1411_pre_ATROPOS_GMM_ELONGATION.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./42-13-1411/42-13-1411_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./42-13-1411/42-13-1411_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./42-13-1411/42-13-1411_pre_ATROPOS_GMM_POSTERIORS1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./42-13-1411/42-13-1411_pre_ATROPOS_GMM_POSTERIORS2.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./42-13-1411/42-13-1411_pre_ATROPOS_GMM_POSTERIORS3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./42-13-1411/42-13-1411_pre_ATROPOS_GMM_POSTERIORS4.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./42-13-1411/42-13-1411_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./42-13-1411/42-13-1411_pre_ENTROPY_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./42-13-1411/42-13-1411_pre_ENTROPY_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./42-13-1411/42-13-1411_pre_MEAN_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./42-13-1411/42-13-1411_pre_MEAN_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./42-13-1411/42-13-1411_pre_NORMALIZED.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./42-13-1411/42-13-1411_pre_SIGMA_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./42-13-1411/42-13-1411_pre_SIGMA_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./42-13-1411/42-13-1411_pre_SKEWNESS_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./42-13-1411/42-13-1411_pre_SKEWNESS_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./42-13-1411/42-13-1411_pre__DIFFERENCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./43-13-1412/43-13-1412_NORMALIZED_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./43-13-1412/43-13-1412_pre_ATROPOS_GMM.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./43-13-1412/43-13-1412_pre_ATROPOS_GMM_ECCENTRICITY.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./43-13-1412/43-13-1412_pre_ATROPOS_GMM_ELONGATION.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./43-13-1412/43-13-1412_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./43-13-1412/43-13-1412_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./43-13-1412/43-13-1412_pre_ATROPOS_GMM_POSTERIORS1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./43-13-1412/43-13-1412_pre_ATROPOS_GMM_POSTERIORS2.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./43-13-1412/43-13-1412_pre_ATROPOS_GMM_POSTERIORS3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./43-13-1412/43-13-1412_pre_ATROPOS_GMM_POSTERIORS4.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./43-13-1412/43-13-1412_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./43-13-1412/43-13-1412_pre_ENTROPY_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./43-13-1412/43-13-1412_pre_ENTROPY_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./43-13-1412/43-13-1412_pre_MEAN_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./43-13-1412/43-13-1412_pre_MEAN_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./43-13-1412/43-13-1412_pre_NORMALIZED.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./43-13-1412/43-13-1412_pre_SIGMA_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./43-13-1412/43-13-1412_pre_SIGMA_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./43-13-1412/43-13-1412_pre_SKEWNESS_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./43-13-1412/43-13-1412_pre_SKEWNESS_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./43-13-1412/43-13-1412_pre__DIFFERENCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./44-13-1488/44-13-1488_NORMALIZED_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./44-13-1488/44-13-1488_pre_ATROPOS_GMM.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./44-13-1488/44-13-1488_pre_ATROPOS_GMM_ECCENTRICITY.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./44-13-1488/44-13-1488_pre_ATROPOS_GMM_ELONGATION.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./44-13-1488/44-13-1488_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./44-13-1488/44-13-1488_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./44-13-1488/44-13-1488_pre_ATROPOS_GMM_POSTERIORS1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./44-13-1488/44-13-1488_pre_ATROPOS_GMM_POSTERIORS2.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./44-13-1488/44-13-1488_pre_ATROPOS_GMM_POSTERIORS3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./44-13-1488/44-13-1488_pre_ATROPOS_GMM_POSTERIORS4.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./44-13-1488/44-13-1488_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./44-13-1488/44-13-1488_pre_ENTROPY_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./44-13-1488/44-13-1488_pre_ENTROPY_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./44-13-1488/44-13-1488_pre_MEAN_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./44-13-1488/44-13-1488_pre_MEAN_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./44-13-1488/44-13-1488_pre_NORMALIZED.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./44-13-1488/44-13-1488_pre_SIGMA_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./44-13-1488/44-13-1488_pre_SIGMA_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./44-13-1488/44-13-1488_pre_SKEWNESS_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./44-13-1488/44-13-1488_pre_SKEWNESS_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./44-13-1488/44-13-1488_pre__DIFFERENCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./45-13-1495/45-13-1495_NORMALIZED_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./45-13-1495/45-13-1495_pre_ATROPOS_GMM.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./45-13-1495/45-13-1495_pre_ATROPOS_GMM_ECCENTRICITY.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./45-13-1495/45-13-1495_pre_ATROPOS_GMM_ELONGATION.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./45-13-1495/45-13-1495_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./45-13-1495/45-13-1495_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./45-13-1495/45-13-1495_pre_ATROPOS_GMM_POSTERIORS1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./45-13-1495/45-13-1495_pre_ATROPOS_GMM_POSTERIORS2.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./45-13-1495/45-13-1495_pre_ATROPOS_GMM_POSTERIORS3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./45-13-1495/45-13-1495_pre_ATROPOS_GMM_POSTERIORS4.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./45-13-1495/45-13-1495_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./45-13-1495/45-13-1495_pre_ENTROPY_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./45-13-1495/45-13-1495_pre_ENTROPY_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./45-13-1495/45-13-1495_pre_MEAN_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./45-13-1495/45-13-1495_pre_MEAN_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./45-13-1495/45-13-1495_pre_NORMALIZED.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./45-13-1495/45-13-1495_pre_SIGMA_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./45-13-1495/45-13-1495_pre_SIGMA_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./45-13-1495/45-13-1495_pre_SKEWNESS_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./45-13-1495/45-13-1495_pre_SKEWNESS_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./45-13-1495/45-13-1495_pre__DIFFERENCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./46-13-1499/46-13-1499_NORMALIZED_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./46-13-1499/46-13-1499_pre_ATROPOS_GMM.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./46-13-1499/46-13-1499_pre_ATROPOS_GMM_ECCENTRICITY.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./46-13-1499/46-13-1499_pre_ATROPOS_GMM_ELONGATION.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./46-13-1499/46-13-1499_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./46-13-1499/46-13-1499_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./46-13-1499/46-13-1499_pre_ATROPOS_GMM_POSTERIORS1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./46-13-1499/46-13-1499_pre_ATROPOS_GMM_POSTERIORS2.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./46-13-1499/46-13-1499_pre_ATROPOS_GMM_POSTERIORS3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./46-13-1499/46-13-1499_pre_ATROPOS_GMM_POSTERIORS4.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./46-13-1499/46-13-1499_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./46-13-1499/46-13-1499_pre_ENTROPY_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./46-13-1499/46-13-1499_pre_ENTROPY_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./46-13-1499/46-13-1499_pre_MEAN_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./46-13-1499/46-13-1499_pre_MEAN_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./46-13-1499/46-13-1499_pre_NORMALIZED.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./46-13-1499/46-13-1499_pre_SIGMA_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./46-13-1499/46-13-1499_pre_SIGMA_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./46-13-1499/46-13-1499_pre_SKEWNESS_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./46-13-1499/46-13-1499_pre_SKEWNESS_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./46-13-1499/46-13-1499_pre__DIFFERENCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./47-13-1504/47-13-1504_NORMALIZED_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./47-13-1504/47-13-1504_pre_ATROPOS_GMM.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./47-13-1504/47-13-1504_pre_ATROPOS_GMM_ECCENTRICITY.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./47-13-1504/47-13-1504_pre_ATROPOS_GMM_ELONGATION.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./47-13-1504/47-13-1504_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./47-13-1504/47-13-1504_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./47-13-1504/47-13-1504_pre_ATROPOS_GMM_POSTERIORS1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./47-13-1504/47-13-1504_pre_ATROPOS_GMM_POSTERIORS2.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./47-13-1504/47-13-1504_pre_ATROPOS_GMM_POSTERIORS3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./47-13-1504/47-13-1504_pre_ATROPOS_GMM_POSTERIORS4.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./47-13-1504/47-13-1504_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./47-13-1504/47-13-1504_pre_ENTROPY_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./47-13-1504/47-13-1504_pre_ENTROPY_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./47-13-1504/47-13-1504_pre_MEAN_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./47-13-1504/47-13-1504_pre_MEAN_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./47-13-1504/47-13-1504_pre_NORMALIZED.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./47-13-1504/47-13-1504_pre_SIGMA_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./47-13-1504/47-13-1504_pre_SIGMA_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./47-13-1504/47-13-1504_pre_SKEWNESS_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./47-13-1504/47-13-1504_pre_SKEWNESS_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./47-13-1504/47-13-1504_pre__DIFFERENCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./48-13-1505/48-13-1505_NORMALIZED_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./48-13-1505/48-13-1505_pre_ATROPOS_GMM.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./48-13-1505/48-13-1505_pre_ATROPOS_GMM_ECCENTRICITY.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./48-13-1505/48-13-1505_pre_ATROPOS_GMM_ELONGATION.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./48-13-1505/48-13-1505_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./48-13-1505/48-13-1505_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./48-13-1505/48-13-1505_pre_ATROPOS_GMM_POSTERIORS1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./48-13-1505/48-13-1505_pre_ATROPOS_GMM_POSTERIORS2.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./48-13-1505/48-13-1505_pre_ATROPOS_GMM_POSTERIORS3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./48-13-1505/48-13-1505_pre_ATROPOS_GMM_POSTERIORS4.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./48-13-1505/48-13-1505_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./48-13-1505/48-13-1505_pre_ENTROPY_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./48-13-1505/48-13-1505_pre_ENTROPY_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./48-13-1505/48-13-1505_pre_MEAN_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./48-13-1505/48-13-1505_pre_MEAN_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./48-13-1505/48-13-1505_pre_NORMALIZED.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./48-13-1505/48-13-1505_pre_SIGMA_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./48-13-1505/48-13-1505_pre_SIGMA_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./48-13-1505/48-13-1505_pre_SKEWNESS_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./48-13-1505/48-13-1505_pre_SKEWNESS_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./48-13-1505/48-13-1505_pre__DIFFERENCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./49-13-1506/49-13-1506_NORMALIZED_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./49-13-1506/49-13-1506_pre_ATROPOS_GMM.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./49-13-1506/49-13-1506_pre_ATROPOS_GMM_ECCENTRICITY.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./49-13-1506/49-13-1506_pre_ATROPOS_GMM_ELONGATION.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./49-13-1506/49-13-1506_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./49-13-1506/49-13-1506_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./49-13-1506/49-13-1506_pre_ATROPOS_GMM_POSTERIORS1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./49-13-1506/49-13-1506_pre_ATROPOS_GMM_POSTERIORS2.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./49-13-1506/49-13-1506_pre_ATROPOS_GMM_POSTERIORS3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./49-13-1506/49-13-1506_pre_ATROPOS_GMM_POSTERIORS4.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./49-13-1506/49-13-1506_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./49-13-1506/49-13-1506_pre_ENTROPY_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./49-13-1506/49-13-1506_pre_ENTROPY_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./49-13-1506/49-13-1506_pre_MEAN_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./49-13-1506/49-13-1506_pre_MEAN_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./49-13-1506/49-13-1506_pre_NORMALIZED.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./49-13-1506/49-13-1506_pre_SIGMA_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./49-13-1506/49-13-1506_pre_SIGMA_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./49-13-1506/49-13-1506_pre_SKEWNESS_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./49-13-1506/49-13-1506_pre_SKEWNESS_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./49-13-1506/49-13-1506_pre__DIFFERENCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./50-13-1507/50-13-1507_NORMALIZED_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./50-13-1507/50-13-1507_pre_ATROPOS_GMM.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./50-13-1507/50-13-1507_pre_ATROPOS_GMM_ECCENTRICITY.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./50-13-1507/50-13-1507_pre_ATROPOS_GMM_ELONGATION.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./50-13-1507/50-13-1507_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./50-13-1507/50-13-1507_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./50-13-1507/50-13-1507_pre_ATROPOS_GMM_POSTERIORS1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./50-13-1507/50-13-1507_pre_ATROPOS_GMM_POSTERIORS2.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./50-13-1507/50-13-1507_pre_ATROPOS_GMM_POSTERIORS3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./50-13-1507/50-13-1507_pre_ATROPOS_GMM_POSTERIORS4.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./50-13-1507/50-13-1507_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./50-13-1507/50-13-1507_pre_ENTROPY_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./50-13-1507/50-13-1507_pre_ENTROPY_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./50-13-1507/50-13-1507_pre_MEAN_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./50-13-1507/50-13-1507_pre_MEAN_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./50-13-1507/50-13-1507_pre_NORMALIZED.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./50-13-1507/50-13-1507_pre_SIGMA_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./50-13-1507/50-13-1507_pre_SIGMA_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./50-13-1507/50-13-1507_pre_SKEWNESS_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./50-13-1507/50-13-1507_pre_SKEWNESS_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./50-13-1507/50-13-1507_pre__DIFFERENCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./51-13-1509/51-13-1509_NORMALIZED_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./51-13-1509/51-13-1509_pre_ATROPOS_GMM.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./51-13-1509/51-13-1509_pre_ATROPOS_GMM_ECCENTRICITY.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./51-13-1509/51-13-1509_pre_ATROPOS_GMM_ELONGATION.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./51-13-1509/51-13-1509_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./51-13-1509/51-13-1509_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./51-13-1509/51-13-1509_pre_ATROPOS_GMM_POSTERIORS1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./51-13-1509/51-13-1509_pre_ATROPOS_GMM_POSTERIORS2.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./51-13-1509/51-13-1509_pre_ATROPOS_GMM_POSTERIORS3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./51-13-1509/51-13-1509_pre_ATROPOS_GMM_POSTERIORS4.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./51-13-1509/51-13-1509_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./51-13-1509/51-13-1509_pre_ENTROPY_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./51-13-1509/51-13-1509_pre_ENTROPY_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./51-13-1509/51-13-1509_pre_MEAN_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./51-13-1509/51-13-1509_pre_MEAN_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./51-13-1509/51-13-1509_pre_NORMALIZED.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./51-13-1509/51-13-1509_pre_SIGMA_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./51-13-1509/51-13-1509_pre_SIGMA_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./51-13-1509/51-13-1509_pre_SKEWNESS_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./51-13-1509/51-13-1509_pre_SKEWNESS_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./51-13-1509/51-13-1509_pre__DIFFERENCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./52-13-1511/52-13-1511_NORMALIZED_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./52-13-1511/52-13-1511_pre_ATROPOS_GMM.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./52-13-1511/52-13-1511_pre_ATROPOS_GMM_ECCENTRICITY.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./52-13-1511/52-13-1511_pre_ATROPOS_GMM_ELONGATION.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./52-13-1511/52-13-1511_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./52-13-1511/52-13-1511_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./52-13-1511/52-13-1511_pre_ATROPOS_GMM_POSTERIORS1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./52-13-1511/52-13-1511_pre_ATROPOS_GMM_POSTERIORS2.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./52-13-1511/52-13-1511_pre_ATROPOS_GMM_POSTERIORS3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./52-13-1511/52-13-1511_pre_ATROPOS_GMM_POSTERIORS4.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./52-13-1511/52-13-1511_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./52-13-1511/52-13-1511_pre_ENTROPY_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./52-13-1511/52-13-1511_pre_ENTROPY_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./52-13-1511/52-13-1511_pre_MEAN_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./52-13-1511/52-13-1511_pre_MEAN_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./52-13-1511/52-13-1511_pre_NORMALIZED.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./52-13-1511/52-13-1511_pre_SIGMA_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./52-13-1511/52-13-1511_pre_SIGMA_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./52-13-1511/52-13-1511_pre_SKEWNESS_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./52-13-1511/52-13-1511_pre_SKEWNESS_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./52-13-1511/52-13-1511_pre__DIFFERENCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./53-13-2057/53-13-2057_NORMALIZED_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./53-13-2057/53-13-2057_pre_ATROPOS_GMM.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./53-13-2057/53-13-2057_pre_ATROPOS_GMM_ECCENTRICITY.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./53-13-2057/53-13-2057_pre_ATROPOS_GMM_ELONGATION.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./53-13-2057/53-13-2057_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./53-13-2057/53-13-2057_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./53-13-2057/53-13-2057_pre_ATROPOS_GMM_POSTERIORS1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./53-13-2057/53-13-2057_pre_ATROPOS_GMM_POSTERIORS2.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./53-13-2057/53-13-2057_pre_ATROPOS_GMM_POSTERIORS3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./53-13-2057/53-13-2057_pre_ATROPOS_GMM_POSTERIORS4.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./53-13-2057/53-13-2057_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./53-13-2057/53-13-2057_pre_ENTROPY_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./53-13-2057/53-13-2057_pre_ENTROPY_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./53-13-2057/53-13-2057_pre_MEAN_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./53-13-2057/53-13-2057_pre_MEAN_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./53-13-2057/53-13-2057_pre_NORMALIZED.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./53-13-2057/53-13-2057_pre_SIGMA_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./53-13-2057/53-13-2057_pre_SIGMA_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./53-13-2057/53-13-2057_pre_SKEWNESS_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./53-13-2057/53-13-2057_pre_SKEWNESS_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./53-13-2057/53-13-2057_pre__DIFFERENCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./54-13-2059/54-13-2059_NORMALIZED_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./54-13-2059/54-13-2059_pre_ATROPOS_GMM.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./54-13-2059/54-13-2059_pre_ATROPOS_GMM_ECCENTRICITY.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./54-13-2059/54-13-2059_pre_ATROPOS_GMM_ELONGATION.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./54-13-2059/54-13-2059_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./54-13-2059/54-13-2059_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./54-13-2059/54-13-2059_pre_ATROPOS_GMM_POSTERIORS1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./54-13-2059/54-13-2059_pre_ATROPOS_GMM_POSTERIORS2.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./54-13-2059/54-13-2059_pre_ATROPOS_GMM_POSTERIORS3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./54-13-2059/54-13-2059_pre_ATROPOS_GMM_POSTERIORS4.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./54-13-2059/54-13-2059_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./54-13-2059/54-13-2059_pre_ENTROPY_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./54-13-2059/54-13-2059_pre_ENTROPY_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./54-13-2059/54-13-2059_pre_MEAN_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./54-13-2059/54-13-2059_pre_MEAN_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./54-13-2059/54-13-2059_pre_NORMALIZED.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./54-13-2059/54-13-2059_pre_SIGMA_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./54-13-2059/54-13-2059_pre_SIGMA_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./54-13-2059/54-13-2059_pre_SKEWNESS_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./54-13-2059/54-13-2059_pre_SKEWNESS_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./54-13-2059/54-13-2059_pre__DIFFERENCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./55-13-2060/55-13-2060_NORMALIZED_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./55-13-2060/55-13-2060_pre_ATROPOS_GMM.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./55-13-2060/55-13-2060_pre_ATROPOS_GMM_ECCENTRICITY.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./55-13-2060/55-13-2060_pre_ATROPOS_GMM_ELONGATION.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./55-13-2060/55-13-2060_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./55-13-2060/55-13-2060_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./55-13-2060/55-13-2060_pre_ATROPOS_GMM_POSTERIORS1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./55-13-2060/55-13-2060_pre_ATROPOS_GMM_POSTERIORS2.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./55-13-2060/55-13-2060_pre_ATROPOS_GMM_POSTERIORS3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./55-13-2060/55-13-2060_pre_ATROPOS_GMM_POSTERIORS4.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./55-13-2060/55-13-2060_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./55-13-2060/55-13-2060_pre_ENTROPY_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./55-13-2060/55-13-2060_pre_ENTROPY_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./55-13-2060/55-13-2060_pre_MEAN_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./55-13-2060/55-13-2060_pre_MEAN_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./55-13-2060/55-13-2060_pre_NORMALIZED.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./55-13-2060/55-13-2060_pre_SIGMA_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./55-13-2060/55-13-2060_pre_SIGMA_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./55-13-2060/55-13-2060_pre_SKEWNESS_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./55-13-2060/55-13-2060_pre_SKEWNESS_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./55-13-2060/55-13-2060_pre__DIFFERENCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./56-13-2066/56-13-2066_NORMALIZED_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./56-13-2066/56-13-2066_pre_ATROPOS_GMM.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./56-13-2066/56-13-2066_pre_ATROPOS_GMM_ECCENTRICITY.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./56-13-2066/56-13-2066_pre_ATROPOS_GMM_ELONGATION.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./56-13-2066/56-13-2066_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./56-13-2066/56-13-2066_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./56-13-2066/56-13-2066_pre_ATROPOS_GMM_POSTERIORS1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./56-13-2066/56-13-2066_pre_ATROPOS_GMM_POSTERIORS2.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./56-13-2066/56-13-2066_pre_ATROPOS_GMM_POSTERIORS3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./56-13-2066/56-13-2066_pre_ATROPOS_GMM_POSTERIORS4.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./56-13-2066/56-13-2066_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./56-13-2066/56-13-2066_pre_ENTROPY_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./56-13-2066/56-13-2066_pre_ENTROPY_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./56-13-2066/56-13-2066_pre_MEAN_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./56-13-2066/56-13-2066_pre_MEAN_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./56-13-2066/56-13-2066_pre_NORMALIZED.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./56-13-2066/56-13-2066_pre_SIGMA_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./56-13-2066/56-13-2066_pre_SIGMA_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./56-13-2066/56-13-2066_pre_SKEWNESS_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./56-13-2066/56-13-2066_pre_SKEWNESS_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./56-13-2066/56-13-2066_pre__DIFFERENCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./57-13-2071/57-13-2071_NORMALIZED_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./57-13-2071/57-13-2071_pre_ATROPOS_GMM.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./57-13-2071/57-13-2071_pre_ATROPOS_GMM_ECCENTRICITY.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./57-13-2071/57-13-2071_pre_ATROPOS_GMM_ELONGATION.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./57-13-2071/57-13-2071_pre_ATROPOS_GMM_LABEL3_DISTANCE.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./57-13-2071/57-13-2071_pre_ATROPOS_GMM_PHYSICAL_VOLUME.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./57-13-2071/57-13-2071_pre_ATROPOS_GMM_POSTERIORS1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./57-13-2071/57-13-2071_pre_ATROPOS_GMM_POSTERIORS2.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./57-13-2071/57-13-2071_pre_ATROPOS_GMM_POSTERIORS3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./57-13-2071/57-13-2071_pre_ATROPOS_GMM_POSTERIORS4.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./57-13-2071/57-13-2071_pre_ATROPOS_GMM_VOLUME_TO_SURFACE_AREA_RATIO.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./57-13-2071/57-13-2071_pre_ENTROPY_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./57-13-2071/57-13-2071_pre_ENTROPY_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./57-13-2071/57-13-2071_pre_MEAN_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./57-13-2071/57-13-2071_pre_MEAN_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./57-13-2071/57-13-2071_pre_NORMALIZED.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./57-13-2071/57-13-2071_pre_SIGMA_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./57-13-2071/57-13-2071_pre_SIGMA_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./57-13-2071/57-13-2071_pre_SKEWNESS_RADIUS_1.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./57-13-2071/57-13-2071_pre_SKEWNESS_RADIUS_3.csv >> mastersheetOV.csv cd $(WORKDIR);cat ./57-13-2071/57-13-2071_pre__DIFFERENCE.csv >> mastersheetOV.csv