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        Note that additional data was saved in multiqc_data when this report was generated.


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        If you use plots from MultiQC in a publication or presentation, please cite:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        About MultiQC

        This report was generated using MultiQC, version 1.0

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/ewels/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

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        Report generated on 2018-05-17, 18:06 based on data in: /stor/work/Iyer/sequencing/align/2017_09.gbm_external/fastq/dayne/fqc


        General Statistics

        Showing 48/48 rows and 3/5 columns.
        Sample Name% Dups% GCM Seqs
        BrBLA_Alc_B49_R1
        50.0%
        42%
        115.3
        BrBLA_Alc_B49_R2
        44.6%
        43%
        115.3
        BrBLA_Alc_B51_R1
        57.8%
        43%
        143.2
        BrBLA_Alc_B51_R2
        52.8%
        43%
        143.2
        BrBLA_Alc_B53_R1
        58.5%
        44%
        143.8
        BrBLA_Alc_B53_R2
        53.7%
        45%
        143.8
        BrBLA_Ctl_B50_R1
        52.8%
        43%
        123.4
        BrBLA_Ctl_B50_R2
        47.5%
        43%
        123.4
        BrBLA_Ctl_B52_R1
        51.6%
        42%
        121.3
        BrBLA_Ctl_B52_R2
        46.1%
        43%
        121.3
        BrBLA_Ctl_B54_R1
        43.1%
        41%
        78.8
        BrBLA_Ctl_B54_R2
        38.7%
        41%
        78.8
        BrCNA_Alc_B49_R1
        69.9%
        48%
        115.5
        BrCNA_Alc_B49_R2
        63.6%
        48%
        115.5
        BrCNA_Alc_B51_R1
        55.7%
        44%
        138.3
        BrCNA_Alc_B51_R2
        50.7%
        44%
        138.3
        BrCNA_Alc_B53_R1
        62.4%
        45%
        115.4
        BrCNA_Alc_B53_R2
        57.4%
        46%
        115.4
        BrCNA_Ctl_B50_R1
        51.4%
        45%
        76.5
        BrCNA_Ctl_B50_R2
        47.1%
        45%
        76.5
        BrCNA_Ctl_B52_R1
        56.2%
        44%
        114.0
        BrCNA_Ctl_B52_R2
        51.4%
        45%
        114.0
        BrCNA_Ctl_B54_R1
        50.6%
        44%
        85.7
        BrCNA_Ctl_B54_R2
        46.8%
        45%
        85.7
        BrNAC_Alc_B49_R1
        56.5%
        40%
        106.9
        BrNAC_Alc_B49_R2
        50.5%
        41%
        106.9
        BrNAC_Alc_B51_R1
        60.0%
        40%
        153.0
        BrNAC_Alc_B51_R2
        53.9%
        41%
        153.0
        BrNAC_Alc_B53_R1
        59.5%
        41%
        119.6
        BrNAC_Alc_B53_R2
        52.6%
        41%
        119.6
        BrNAC_Ctl_B50_R1
        61.0%
        41%
        153.9
        BrNAC_Ctl_B50_R2
        54.7%
        41%
        153.9
        BrNAC_Ctl_B52_R1
        52.5%
        40%
        104.0
        BrNAC_Ctl_B52_R2
        46.4%
        41%
        104.0
        BrNAC_Ctl_B54_R1
        58.7%
        41%
        96.8
        BrNAC_Ctl_B54_R2
        53.2%
        41%
        96.8
        BrSFC_Alc_B49_R1
        52.9%
        42%
        117.6
        BrSFC_Alc_B49_R2
        47.1%
        42%
        117.6
        BrSFC_Alc_B51_R1
        66.2%
        43%
        147.5
        BrSFC_Alc_B51_R2
        60.9%
        43%
        147.5
        BrSFC_Alc_B53_R1
        53.6%
        42%
        92.7
        BrSFC_Alc_B53_R2
        48.8%
        43%
        92.7
        BrSFC_Ctl_B50_R1
        58.1%
        44%
        136.0
        BrSFC_Ctl_B50_R2
        53.8%
        44%
        136.0
        BrSFC_Ctl_B52_R1
        47.6%
        43%
        131.5
        BrSFC_Ctl_B52_R2
        42.8%
        43%
        131.5
        BrSFC_Ctl_B54_R1
        57.3%
        41%
        145.6
        BrSFC_Ctl_B54_R2
        51.8%
        41%
        145.6

        FastQC

        FastQC is a quality control tool for high throughput sequence data, written by Simon Andrews at the Babraham Institute in Cambridge.

        Sequence Quality Histograms

        The mean quality value across each base position in the read. See the FastQC help.

        loading..

        Per Sequence Quality Scores

        The number of reads with average quality scores. Shows if a subset of reads has poor quality. See the FastQC help.

        loading..

        Per Base Sequence Content

        The proportion of each base position for which each of the four normal DNA bases has been called. See the FastQC help.

        Click a sample row to see a line plot for that dataset.
        Rollover for sample name
        Position: -
        %T: -
        %C: -
        %A: -
        %G: -

        Per Sequence GC Content

        The average GC content of reads. Normal random library typically have a roughly normal distribution of GC content. See the FastQC help.

        loading..

        Per Base N Content

        The percentage of base calls at each position for which an N was called. See the FastQC help.

        loading..

        Sequence Length Distribution

        All samples have sequences of a single length (101bp).


        Sequence Duplication Levels

        The relative level of duplication found for every sequence. See the FastQC help.

        loading..

        Overrepresented sequences

        The total amount of overrepresented sequences found in each library. See the FastQC help for further information.

        loading..

        Adapter Content

        The cumulative percentage count of the proportion of your library which has seen each of the adapter sequences at each position. See the FastQC help. Only samples with ≥ 0.1% adapter contamination are shown.

        loading..