FastQCFastQC Report
Wed 5 Jul 2017
50knuclei_S56_L007_R2_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename50knuclei_S56_L007_R2_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10238063
Sequences flagged as poor quality0
Sequence length150
%GC46

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGGACG43000.014.2258994
GTCTAAG54450.012.4242391
GTCCTAC60900.012.4082881
CTATACT61150.012.1218814
AGGACGT52950.011.2808375
GTGTAGG76500.011.1950321
GTATAAG50250.010.8847231
GTAGGAC62150.010.7688923
TCTATAC56400.010.5907863
TATACTG63400.010.5565725
GTATAGC50300.010.3015921
TATACAG95850.010.2862655
CTAGGAC69300.010.2809013
GTCTAGG52100.010.22195151
TAGACCG12801.4078978E-910.1202625
TAGACTG77100.010.0808845
CTACACT79300.09.8919644
GTCCTAG65550.09.8811991
TGTACTG84450.09.8000315
GTATAGG39800.09.7645111