Basic Statistics
Measure | Value |
---|---|
Filename | 50knuclei_S56_L007_R1_001.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 10238063 |
Sequences flagged as poor quality | 0 |
Sequence length | 150 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCGTAC | 520 | 5.8405985E-6 | 13.8623495 | 1 |
TAGGACG | 4330 | 0.0 | 13.800726 | 4 |
GTCCTAC | 6145 | 0.0 | 13.25552 | 1 |
TACACCG | 1295 | 0.0 | 12.230956 | 5 |
TATACTG | 6595 | 0.0 | 12.226742 | 5 |
TACACAG | 14900 | 0.0 | 11.693287 | 5 |
GTAGGAC | 6480 | 0.0 | 11.66611 | 3 |
GTCTAGG | 5560 | 0.0 | 11.538661 | 1 |
TACACTG | 11100 | 0.0 | 11.415559 | 5 |
AGGACCG | 2965 | 0.0 | 11.169678 | 5 |
AGGACGT | 5240 | 0.0 | 11.129131 | 5 |
CTAGGAC | 6995 | 0.0 | 10.910129 | 3 |
CTATACT | 6165 | 0.0 | 10.744012 | 4 |
CTACACT | 7875 | 0.0 | 10.696631 | 4 |
GTGTAGG | 7330 | 0.0 | 10.620868 | 1 |
CTACACA | 13820 | 0.0 | 10.575472 | 4 |
CCTACAC | 7575 | 0.0 | 10.549992 | 3 |
TATACAG | 8940 | 0.0 | 10.549728 | 5 |
TCTACAC | 8005 | 0.0 | 10.432981 | 3 |
ACTGTGC | 10570 | 0.0 | 10.42135 | 8 |